Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46956 * 2 1 4 4 C 1.38251 * 120.00274 * 265.18858 * 3 2 1 5 5 C 1.38213 * 120.00254 * 180.21421 * 4 3 2 6 6 C 1.38259 * 119.99689 * 359.85090 * 5 4 3 7 7 S 1.76196 * 119.99931 * 179.97438 * 6 5 4 8 8 O 1.42091 * 106.40414 * 23.51766 * 7 6 5 9 9 O 1.42105 * 106.40391 * 156.44365 * 7 6 5 10 10 N 1.65607 * 107.21767 * 269.97582 * 7 6 5 11 11 C 1.39988 * 119.99249 * 65.00073 * 10 7 6 12 12 C 1.40432 * 125.97021 * 179.71821 * 11 10 7 13 13 C 1.35255 * 107.86159 * 179.83094 * 12 11 10 14 14 N 1.34958 * 107.85920 * 0.42582 * 13 12 11 15 15 C 1.46503 * 125.97042 * 179.73243 * 14 13 12 16 16 C 1.50698 * 109.47323 * 124.97651 * 15 14 13 17 17 H 1.08000 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99896 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99826 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46904 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46998 * 119.99951 * 20 18 16 23 23 H 1.48499 * 109.47048 * 240.00108 * 20 18 16 24 24 N 1.31218 * 125.98080 * 0.02660 * 11 10 7 25 25 C 1.38219 * 120.00231 * 359.96183 * 6 5 4 26 26 C 1.38213 * 119.99436 * 85.00116 * 3 2 1 27 27 C 1.50698 * 120.00613 * 359.97438 * 26 3 2 28 28 C 1.53006 * 109.47184 * 84.72263 * 27 26 3 29 29 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47226 * 299.99770 * 1 2 3 31 31 H 1.09000 * 109.47362 * 59.99905 * 1 2 3 32 32 H 1.09003 * 109.47226 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47362 * 120.00095 * 2 1 3 34 34 H 1.08000 * 120.00104 * 0.04267 * 4 3 2 35 35 H 1.07994 * 120.00389 * 179.83735 * 5 4 3 36 36 H 0.96994 * 120.00303 * 245.00407 * 10 7 6 37 37 H 1.07998 * 126.06789 * 359.95783 * 12 11 10 38 38 H 1.07995 * 126.07172 * 180.13765 * 13 12 11 39 39 H 1.08998 * 109.46951 * 244.97392 * 15 14 13 40 40 H 1.08999 * 109.47342 * 4.97371 * 15 14 13 41 41 H 0.97000 * 119.99779 * 179.97438 * 19 18 16 42 42 H 1.07999 * 120.00122 * 180.02562 * 25 6 5 43 43 H 1.09001 * 109.46665 * 324.72651 * 27 26 3 44 44 H 1.08993 * 109.47304 * 204.72207 * 27 26 3 45 45 H 1.09001 * 109.46801 * 300.00442 * 28 27 26 46 46 H 1.09001 * 109.46998 * 60.00038 * 28 27 26 47 47 H 1.09000 * 109.47050 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3574 2.0392 -1.1930 5 6 2.8222 3.3408 -1.1927 6 6 2.9592 4.0255 0.0006 7 16 3.5525 5.6846 0.0012 8 8 3.2773 6.2096 -1.2901 9 8 3.0765 6.2805 1.2003 10 7 5.2016 5.6154 0.1363 11 6 5.9643 5.0433 -0.8888 12 6 7.3634 4.9245 -0.9079 13 6 7.7122 4.3150 -2.0638 14 7 6.5818 4.0646 -2.7572 15 6 6.5027 3.4194 -4.0701 16 6 5.5782 2.2319 -3.9914 17 1 5.0979 1.9824 -3.0568 18 6 5.3463 1.4633 -5.1124 19 7 5.9315 1.7667 -6.2503 20 14 4.2009 -0.0092 -5.0146 21 1 3.6732 -0.1349 -3.6322 22 1 3.0713 0.1788 -5.9600 23 1 4.9473 -1.2416 -5.3740 24 7 5.4973 4.5294 -2.0022 25 6 2.6305 3.4087 1.1931 26 6 2.1642 2.1071 1.1925 27 6 1.8053 1.4348 2.4925 28 6 2.9999 0.6195 2.9920 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2507 1.5042 -2.1251 35 1 3.0787 3.8229 -2.1244 36 1 5.6390 5.9713 0.9255 37 1 8.0405 5.2585 -0.1357 38 1 8.7173 4.0757 -2.3784 39 1 6.1192 4.1304 -4.8018 40 1 7.4959 3.0872 -4.3722 41 1 5.7687 1.2257 -7.0388 42 1 2.7372 3.9437 2.1252 43 1 0.9536 0.7728 2.3362 44 1 1.5465 2.1911 3.2334 45 1 3.2588 -0.1369 2.2510 46 1 3.8517 1.2815 3.1482 47 1 2.7401 0.1329 3.9321 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160203677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = 13.632648 kcal Electronic energy + Delta-G solvation = -31453.054741 eV Core-core repulsion = 27343.036701 eV Total energy + Delta-G solvation = -4110.018040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.52684 -39.74487 -37.05983 -35.68794 -35.21166 -34.80366 -33.52014 -33.31848 -30.79696 -29.93612 -29.51064 -29.10861 -26.69808 -24.63338 -23.68696 -23.22189 -21.64765 -21.07102 -20.78445 -20.58338 -18.69667 -17.46630 -17.27716 -16.73236 -16.62850 -16.25584 -15.54459 -15.36246 -14.81198 -14.54522 -14.39184 -14.13842 -13.94461 -13.74830 -13.63209 -13.30915 -13.11517 -12.91091 -12.86028 -12.54722 -12.43854 -12.08253 -12.03311 -11.94684 -11.85828 -11.83176 -11.67157 -11.42585 -11.37352 -11.27864 -11.15706 -10.94683 -10.84301 -10.62614 -10.34588 -10.28084 -9.96688 -9.59937 -8.94710 -8.70138 -8.61043 -8.36282 -7.67332 -6.30395 -4.34958 0.47518 1.01348 1.50860 2.64779 2.80977 3.15255 3.23348 3.26002 3.30859 3.52689 3.66496 3.98431 4.24387 4.48535 4.65852 4.79364 4.83455 4.90370 4.99960 5.09387 5.13915 5.19568 5.28038 5.34158 5.40277 5.48110 5.51981 5.59927 5.67871 5.74692 5.78248 5.92483 6.02135 6.02364 6.06109 6.12046 6.16886 6.21508 6.27294 6.37873 6.46141 6.62382 6.68817 6.95077 7.07086 7.08360 7.31792 7.63450 7.80109 7.91235 8.42725 8.73207 9.30403 10.78793 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.007037 B = 0.005325 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3977.953904 B = 5256.904515 C = 7985.352611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.023 4.023 4 C -0.134 4.134 5 C 0.017 3.983 6 C -0.675 4.675 7 S 2.694 3.306 8 O -0.931 6.931 9 O -0.965 6.965 10 N -1.015 6.015 11 C 0.277 3.723 12 C -0.306 4.306 13 C 0.069 3.931 14 N -0.312 5.312 15 C 0.256 3.744 16 C -0.527 4.527 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.282 1.282 24 N -0.302 5.302 25 C -0.020 4.020 26 C -0.114 4.114 27 C -0.085 4.085 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.156 0.844 36 H 0.429 0.571 37 H 0.140 0.860 38 H 0.171 0.829 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.267 0.733 42 H 0.133 0.867 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.752 -0.847 15.839 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.024 4.024 4 C -0.153 4.153 5 C -0.003 4.003 6 C -0.764 4.764 7 S 2.785 3.215 8 O -0.921 6.921 9 O -0.955 6.955 10 N -0.768 5.768 11 C 0.021 3.979 12 C -0.339 4.339 13 C -0.083 4.083 14 N -0.093 5.093 15 C 0.138 3.862 16 C -0.566 4.566 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.727 3.273 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.208 1.208 24 N -0.133 5.133 25 C -0.039 4.039 26 C -0.115 4.115 27 C -0.122 4.122 28 C -0.207 4.207 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.265 0.735 37 H 0.158 0.842 38 H 0.188 0.812 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.406 -0.505 14.617 15.593 hybrid contribution 0.674 -1.250 0.663 1.567 sum -4.733 -1.755 15.280 16.092 Atomic orbital electron populations 1.21747 0.94356 1.01837 1.02413 1.20746 0.96472 0.92732 1.03550 1.20047 0.93979 0.95535 0.92797 1.21265 1.00684 0.95420 0.97936 1.21189 0.88249 0.93535 0.97309 1.30574 1.20077 1.25947 0.99796 1.01917 0.71751 0.74162 0.73654 1.93634 1.82165 1.76361 1.39912 1.93576 1.78255 1.75540 1.48133 1.52594 1.25440 1.72190 1.26597 1.18669 0.90872 0.98803 0.89551 1.20835 0.92842 1.17777 1.02462 1.22430 0.93486 0.99465 0.92897 1.49096 1.01372 1.42016 1.16829 1.19826 0.99671 0.92923 0.73742 1.21264 1.27762 1.10382 0.97146 0.91036 1.24908 0.96090 0.97984 0.94892 1.69915 1.42988 1.39657 1.00548 0.86401 0.80571 0.81882 0.78449 1.19331 1.20604 1.20800 1.77387 1.11606 1.21125 1.03191 1.20664 0.93254 0.93911 0.96116 1.19695 1.02654 0.94337 0.94783 1.20563 0.98750 0.99278 0.93589 1.21792 0.98025 1.00113 1.00733 0.92207 0.92379 0.92274 0.90514 0.90281 0.85078 0.82690 0.73453 0.84248 0.81209 0.93346 0.92420 0.92348 0.84874 0.90644 0.90988 0.92394 0.92411 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.72 37.16 0.36 -1.10 16 2 C -0.10 -1.15 5.38 -27.88 -0.15 -1.30 16 3 C -0.02 -0.34 5.13 -104.62 -0.54 -0.87 16 4 C -0.13 -2.30 9.68 -39.59 -0.38 -2.68 16 5 C 0.02 0.31 8.70 -39.58 -0.34 -0.04 16 6 C -0.68 -11.34 5.91 -39.58 -0.23 -11.58 16 7 S 2.69 45.17 5.49 -107.50 -0.59 44.58 16 8 O -0.93 -18.98 16.50 -57.17 -0.94 -19.93 16 9 O -0.96 -16.17 17.28 -57.17 -0.99 -17.16 16 10 N -1.02 -15.30 5.91 31.39 0.19 -15.12 16 11 C 0.28 5.06 7.72 -154.55 -1.19 3.87 16 12 C -0.31 -4.95 10.83 -39.82 -0.43 -5.38 16 13 C 0.07 1.19 11.44 -17.24 -0.20 0.99 16 14 N -0.31 -6.69 3.67 -62.56 -0.23 -6.92 16 15 C 0.26 6.10 6.26 -5.19 -0.03 6.07 16 16 C -0.53 -13.70 9.24 -34.44 -0.32 -14.02 16 17 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -24.34 13.29 55.43 0.74 -23.61 16 20 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 N -0.30 -6.52 9.86 31.41 0.31 -6.21 16 25 C -0.02 -0.29 9.16 -39.58 -0.36 -0.65 16 26 C -0.11 -1.54 5.13 -104.62 -0.54 -2.08 16 27 C -0.08 -0.86 5.38 -27.88 -0.15 -1.01 16 28 C -0.15 -1.41 9.72 37.16 0.36 -1.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.54 6.79 -51.93 -0.35 0.19 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.95 8.05 -51.93 -0.42 0.53 16 33 H 0.08 0.81 5.60 -51.93 -0.29 0.52 16 34 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.16 3.19 6.87 -52.49 -0.36 2.83 16 36 H 0.43 4.74 8.95 -34.48 -0.31 4.43 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.17 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16 43 H 0.08 0.68 5.63 -51.93 -0.29 0.39 16 44 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 45 H 0.06 0.58 6.77 -51.93 -0.35 0.22 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 401.13 15.07 6.04 6.04 Total: -1.00 -32.42 401.13 -11.28 -43.70 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.54 Total: 8.62 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -4.24 Total: -29.24 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 1.00 Total: -51.85 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -1.93 Total: -37.09 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.59 Total: 44.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.42 -11.28 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160203677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.333 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds