Wall clock time and date at job start Tue Mar 31 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38213 * 119.95592 * 2 1 4 4 C 1.38127 * 120.12216 * 179.72076 * 3 2 1 5 5 C 1.38925 * 120.04170 * 0.50498 * 4 3 2 6 6 N 1.39938 * 120.04023 * 179.77319 * 5 4 3 7 7 C 1.34769 * 119.99844 * 326.52332 * 6 5 4 8 8 O 1.21584 * 120.00553 * 354.69209 * 7 6 5 9 9 N 1.34784 * 120.00003 * 174.69056 * 7 6 5 10 10 C 1.46498 * 120.00122 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47410 * 34.72435 * 10 9 7 12 12 C 1.53003 * 109.47163 * 274.72668 * 10 9 7 13 13 C 1.50705 * 109.47054 * 154.72585 * 10 9 7 14 14 H 1.07998 * 119.99682 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99716 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00128 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99383 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.47254 * 90.00102 * 17 15 13 19 19 H 1.48508 * 109.46757 * 209.99847 * 17 15 13 20 20 H 1.48496 * 109.47280 * 329.99678 * 17 15 13 21 21 C 1.38746 * 119.91529 * 359.49091 * 5 4 3 22 22 C 1.38628 * 119.87644 * 0.25602 * 21 5 4 23 23 O 1.35897 * 120.02362 * 180.02562 * 22 21 5 24 24 C 1.42908 * 116.99670 * 0.02562 * 23 22 21 25 25 C 1.53000 * 109.46781 * 180.02562 * 24 23 22 26 26 C 1.53172 * 109.54338 * 294.55111 * 25 24 23 27 27 C 1.53090 * 109.16216 * 183.15671 * 26 25 24 28 28 O 1.42906 * 109.41835 * 57.61061 * 27 26 25 29 29 C 1.42899 * 114.09667 * 298.84185 * 28 27 26 30 30 C 1.53100 * 109.41263 * 61.15585 * 29 28 27 31 31 H 1.08997 * 109.47108 * 270.02516 * 1 2 3 32 32 H 1.08998 * 109.46973 * 30.02831 * 1 2 3 33 33 H 1.09004 * 109.46666 * 150.02377 * 1 2 3 34 34 H 1.08001 * 119.93701 * 359.97228 * 3 2 1 35 35 H 1.08000 * 119.97588 * 180.25327 * 4 3 2 36 36 H 0.96996 * 119.99918 * 146.53564 * 6 5 4 37 37 H 0.96998 * 119.99369 * 359.73020 * 9 7 6 38 38 H 1.09003 * 109.46767 * 300.00160 * 12 10 9 39 39 H 1.08999 * 109.47145 * 60.00109 * 12 10 9 40 40 H 1.09000 * 109.47293 * 180.02562 * 12 10 9 41 41 H 0.97000 * 120.00097 * 180.02562 * 16 15 13 42 42 H 1.07996 * 120.06240 * 180.23044 * 21 5 4 43 43 H 1.09000 * 109.46812 * 299.99899 * 24 23 22 44 44 H 1.08994 * 109.47064 * 60.00267 * 24 23 22 45 45 H 1.09000 * 109.54676 * 54.82318 * 25 24 23 46 46 H 1.09002 * 109.52651 * 303.06104 * 26 25 24 47 47 H 1.09003 * 109.52010 * 63.25165 * 26 25 24 48 48 H 1.09004 * 109.48501 * 297.62220 * 27 26 25 49 49 H 1.09008 * 109.48019 * 177.59528 * 27 26 25 50 50 H 1.09004 * 109.48129 * 301.17929 * 29 28 27 51 51 H 1.08998 * 109.49053 * 181.14433 * 29 28 27 52 52 H 1.09002 * 109.51790 * 182.49002 * 30 29 28 53 53 H 1.08995 * 109.52379 * 62.30133 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1975 0.0000 4 6 3.5784 1.2015 0.0058 5 6 4.2774 0.0009 0.0011 6 7 5.6768 0.0051 0.0022 7 6 6.3482 0.9834 -0.6368 8 8 5.7424 1.8072 -1.2945 9 7 7.6915 1.0487 -0.5468 10 6 8.4213 2.1125 -1.2409 11 1 7.8250 3.0249 -1.2364 12 6 8.6914 1.6869 -2.6855 13 6 9.7305 2.3645 -0.5383 14 1 9.9924 1.7900 0.3379 15 6 10.5934 3.3292 -1.0135 16 7 10.2741 4.0291 -2.0802 17 14 12.2165 3.6410 -0.1430 18 1 13.2667 2.7681 -0.7262 19 1 12.6045 5.0643 -0.3141 20 1 12.0685 3.3388 1.3034 21 6 3.5863 -1.2021 0.0012 22 6 2.2000 -1.2022 0.0007 23 8 1.5201 -2.3788 0.0013 24 6 2.2981 -3.5776 0.0031 25 6 1.3656 -4.7906 0.0029 26 6 0.5763 -4.8303 1.3150 27 6 -0.2950 -6.0889 1.3394 28 8 0.5337 -7.2434 1.1889 29 6 1.2599 -7.2840 -0.0411 30 6 2.1936 -6.0733 -0.1210 31 1 -0.3633 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5135 34 1 1.6554 2.1318 -0.0005 35 1 4.1153 2.1386 0.0099 36 1 6.1635 -0.6963 0.4627 37 1 8.1745 0.3938 -0.0189 38 1 9.2877 0.7744 -2.6900 39 1 7.7445 1.5047 -3.1937 40 1 9.2349 2.4782 -3.2019 41 1 10.8813 4.7075 -2.4147 42 1 4.1273 -2.1368 0.0013 43 1 2.9275 -3.6035 -0.8864 44 1 2.9261 -3.6018 0.8936 45 1 0.6751 -4.7197 -0.8375 46 1 1.2689 -4.8505 2.1564 47 1 -0.0581 -3.9467 1.3853 48 1 -1.0146 -6.0489 0.5217 49 1 -0.8268 -6.1445 2.2893 50 1 0.5607 -7.2595 -0.8770 51 1 1.8482 -8.2004 -0.0860 52 1 2.7159 -6.0787 -1.0777 53 1 2.9190 -6.1186 0.6913 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160922963.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:48 Heat of formation + Delta-G solvation = -123.577224 kcal Electronic energy + Delta-G solvation = -32138.512018 eV Core-core repulsion = 27781.050247 eV Total energy + Delta-G solvation = -4357.461772 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81259 -40.94972 -40.14925 -38.55809 -36.92000 -35.94192 -35.16578 -34.38380 -32.58896 -32.02812 -31.04650 -30.56782 -28.76478 -27.37162 -26.94595 -24.63389 -24.48904 -23.88858 -22.83580 -22.24490 -21.53277 -20.98808 -19.90285 -19.31193 -18.15527 -17.41305 -17.24967 -17.09605 -16.95863 -16.76392 -16.62152 -16.40599 -15.92784 -15.72493 -15.64637 -15.32751 -15.03783 -14.70214 -14.63884 -14.39761 -14.26561 -14.05840 -13.81838 -13.40435 -13.28769 -13.18931 -13.02391 -13.00594 -12.84596 -12.72263 -12.52916 -12.32195 -12.28728 -12.22776 -12.18708 -12.13574 -11.76923 -11.49729 -11.26276 -11.20144 -11.11184 -10.90112 -10.61511 -10.49657 -9.86906 -9.49379 -8.74661 -8.18158 -6.35512 0.27367 0.46735 1.45040 1.45993 1.56153 1.71040 2.12874 2.17419 2.41515 2.81949 2.99660 3.12433 3.39261 3.61973 3.72251 3.84354 3.87844 4.01233 4.07112 4.20827 4.24493 4.28991 4.32790 4.41166 4.43903 4.54797 4.60946 4.65650 4.73199 4.74607 4.81254 4.82415 4.85282 4.91666 4.91943 4.93753 5.06246 5.10023 5.12733 5.17370 5.23599 5.34217 5.35025 5.42811 5.55066 5.56814 5.61391 5.64621 5.82396 5.90300 6.07967 6.22863 6.28316 6.43972 6.71861 7.19427 7.33065 7.64036 8.88345 Molecular weight = 362.20amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.001754 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.165862 B =15959.894357 C =17276.995755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.146 4.146 3 C -0.065 4.065 4 C -0.179 4.179 5 C 0.193 3.807 6 N -0.676 5.676 7 C 0.693 3.307 8 O -0.622 6.622 9 N -0.713 5.713 10 C 0.288 3.712 11 H 0.000 1.000 12 C -0.134 4.134 13 C -0.546 4.546 14 H 0.074 0.926 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.233 4.233 22 C 0.146 3.854 23 O -0.309 6.309 24 C 0.059 3.941 25 C -0.083 4.083 26 C -0.146 4.146 27 C 0.058 3.942 28 O -0.406 6.406 29 C 0.058 3.942 30 C -0.147 4.147 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.421 0.579 37 H 0.404 0.596 38 H 0.041 0.959 39 H 0.010 0.990 40 H 0.068 0.932 41 H 0.266 0.734 42 H 0.150 0.850 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.102 0.898 50 H 0.059 0.941 51 H 0.106 0.894 52 H 0.090 0.910 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.507 -22.002 7.011 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C -0.084 4.084 4 C -0.200 4.200 5 C 0.097 3.903 6 N -0.325 5.325 7 C 0.394 3.606 8 O -0.502 6.502 9 N -0.365 5.365 10 C 0.184 3.816 11 H 0.018 0.982 12 C -0.193 4.193 13 C -0.584 4.584 14 H 0.092 0.908 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.255 4.255 22 C 0.099 3.901 23 O -0.222 6.222 24 C -0.016 4.016 25 C -0.101 4.101 26 C -0.184 4.184 27 C -0.018 4.018 28 O -0.325 6.325 29 C -0.018 4.018 30 C -0.184 4.184 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.125 0.875 36 H 0.259 0.741 37 H 0.239 0.761 38 H 0.060 0.940 39 H 0.029 0.971 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.168 0.832 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.120 0.880 50 H 0.077 0.923 51 H 0.124 0.876 52 H 0.108 0.892 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.055 -21.273 6.434 30.614 hybrid contribution 1.827 0.377 0.256 1.883 sum -19.227 -20.896 6.690 29.174 Atomic orbital electron populations 1.20555 0.88678 1.03082 1.02777 1.19477 0.97843 0.89789 1.07603 1.20920 0.92484 0.98160 0.96831 1.21098 0.95148 0.97383 1.06385 1.17390 0.81678 0.93822 0.97421 1.42506 1.04585 1.29128 1.56320 1.16228 0.82694 0.81771 0.79952 1.90874 1.68496 1.43700 1.47149 1.45461 1.03707 1.33628 1.53752 1.18279 0.89897 0.84054 0.89336 0.98203 1.21925 0.97845 1.00807 0.98731 1.21507 1.02591 1.21032 1.13258 0.90765 1.25803 1.02103 0.95094 0.95618 1.70052 1.38142 1.23355 1.23906 0.85309 0.78654 0.77179 0.78951 1.19613 1.21282 1.18881 1.20930 0.93437 0.97493 1.13624 1.18482 0.89375 0.86077 0.96132 1.86025 1.35703 1.12075 1.88445 1.23031 0.94368 0.82051 1.02172 1.21174 0.97348 0.92314 0.99303 1.22184 0.99864 0.99131 0.97210 1.22693 0.92088 0.84212 1.02835 1.87916 1.61100 1.43584 1.39930 1.22699 0.94148 0.98704 0.86293 1.22174 0.98750 0.93521 1.03999 0.90634 0.90853 0.91274 0.83606 0.87537 0.74126 0.76104 0.94017 0.97111 0.91325 0.92502 0.83194 0.91401 0.91270 0.89831 0.91557 0.90159 0.92382 0.88036 0.92289 0.87573 0.89180 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.79 71.24 0.70 -0.95 16 2 C -0.15 -3.46 5.90 -19.74 -0.12 -3.57 16 3 C -0.07 -1.77 9.69 22.24 0.22 -1.55 16 4 C -0.18 -6.03 8.65 22.41 0.19 -5.83 16 5 C 0.19 5.93 6.27 38.13 0.24 6.17 16 6 N -0.68 -20.84 5.35 -317.24 -1.70 -22.53 16 7 C 0.69 28.72 8.27 179.05 1.48 30.20 16 8 O -0.62 -31.56 13.69 -3.98 -0.05 -31.62 16 9 N -0.71 -29.62 5.07 -461.40 -2.34 -31.96 16 10 C 0.29 14.96 2.56 44.25 0.11 15.07 16 11 H 0.00 0.00 7.57 -2.39 -0.02 -0.01 16 12 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 13 C -0.55 -28.60 8.73 25.60 0.22 -28.38 16 14 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -52.32 11.32 21.45 0.24 -52.08 16 17 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 C -0.23 -5.68 8.95 22.48 0.20 -5.47 16 22 C 0.15 3.41 6.66 22.49 0.15 3.56 16 23 O -0.31 -5.95 8.79 -92.39 -0.81 -6.76 16 24 C 0.06 0.83 4.13 71.98 0.30 1.12 16 25 C -0.08 -0.94 2.51 -10.68 -0.03 -0.97 16 26 C -0.15 -1.71 5.29 30.68 0.16 -1.55 16 27 C 0.06 0.65 6.84 72.01 0.49 1.14 16 28 O -0.41 -5.99 10.77 -148.98 -1.60 -7.59 16 29 C 0.06 0.58 6.84 72.02 0.49 1.07 16 30 C -0.15 -1.36 5.42 30.69 0.17 -1.19 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 33 H 0.07 1.17 7.53 -2.38 -0.02 1.15 16 34 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.11 4.28 6.42 -2.91 -0.02 4.26 16 36 H 0.42 9.41 8.83 -92.71 -0.82 8.59 16 37 H 0.40 13.73 8.56 -92.71 -0.79 12.94 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 41 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.15 2.81 6.30 -2.91 -0.02 2.79 16 43 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 44 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.08 0.98 7.93 -2.39 -0.02 0.96 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 51 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 52 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -71.11 423.19 1.17 -69.94 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.68 Total: 35.03 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.10 Total: 3.90 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -3.79 Total: -106.57 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -2.47 Total: -45.97 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -71.11 1.17 -69.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160922963.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.639 kcal (2) G-P(sol) polarization free energy of solvation -71.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds