Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47055 * 299.99672 * 3 2 1 6 6 H 1.48492 * 109.47355 * 59.99957 * 3 2 1 7 7 C 1.37879 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99682 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00029 * 263.29814 * 10 9 7 12 12 C 1.50704 * 109.46930 * 274.79794 * 11 10 9 13 13 C 1.34514 * 125.78568 * 89.71588 * 12 11 10 14 14 C 1.41388 * 106.83968 * 179.89134 * 13 12 11 15 15 C 1.34519 * 106.83932 * 0.37358 * 14 13 12 16 16 O 1.34304 * 125.78926 * 270.03114 * 12 11 10 17 17 C 1.34778 * 119.99393 * 83.29430 * 10 9 7 18 18 O 1.21366 * 119.99527 * 174.71787 * 17 10 9 19 19 C 1.49340 * 120.00249 * 354.71649 * 17 10 9 20 20 O 1.21377 * 120.00027 * 0.56101 * 19 17 10 21 21 N 1.34785 * 119.99695 * 180.56068 * 19 17 10 22 22 C 1.39817 * 119.99477 * 185.73842 * 21 19 17 23 23 C 1.38852 * 120.07629 * 23.53960 * 22 21 19 24 24 C 1.38316 * 119.92655 * 179.76972 * 23 22 21 25 25 F 1.35102 * 119.96871 * 180.25396 * 24 23 22 26 26 C 1.38507 * 120.06959 * 0.50475 * 24 23 22 27 27 C 1.38254 * 120.14318 * 359.74485 * 26 24 23 28 28 C 1.38293 * 120.07439 * 0.02562 * 27 26 24 29 29 F 1.35099 * 120.03744 * 179.97438 * 28 27 26 30 30 H 0.96996 * 120.00382 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46995 * 60.00420 * 9 7 2 32 32 H 1.08997 * 109.47205 * 299.99742 * 9 7 2 33 33 H 1.08994 * 109.47643 * 34.79946 * 11 10 9 34 34 H 1.09000 * 109.46854 * 154.80530 * 11 10 9 35 35 H 1.07992 * 126.58323 * 0.03295 * 13 12 11 36 36 H 1.08000 * 126.58367 * 180.16994 * 14 13 12 37 37 H 1.07999 * 125.79060 * 179.75176 * 15 14 13 38 38 H 0.96991 * 119.99981 * 6.01669 * 21 19 17 39 39 H 1.08003 * 120.03530 * 0.02562 * 23 22 21 40 40 H 1.07999 * 119.92941 * 179.72920 * 26 24 23 41 41 H 1.08001 * 119.96914 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.5665 -4.2656 -1.2595 12 6 1.5501 -5.3296 -1.5853 13 6 0.4257 -5.1503 -2.3014 14 6 -0.2250 -6.4040 -2.3630 15 6 0.5365 -7.2726 -1.6737 16 8 1.6105 -6.6162 -1.2049 17 6 2.7445 -4.0362 1.1598 18 8 3.4578 -5.0180 1.1734 19 6 2.4667 -3.2974 2.4276 20 8 1.7452 -2.3215 2.4157 21 7 3.0174 -3.7145 3.5850 22 6 2.6639 -3.0981 4.7892 23 6 1.4503 -2.4328 4.9004 24 6 1.1016 -1.8282 6.0946 25 9 -0.0813 -1.1850 6.2053 26 6 1.9663 -1.8771 7.1756 27 6 3.1777 -2.5343 7.0665 28 6 3.5302 -3.1449 5.8768 29 9 4.7144 -3.7865 5.7708 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.5871 -3.5257 -2.0595 34 1 3.5515 -4.7221 -1.1612 35 1 0.0863 -4.2266 -2.7462 36 1 -1.1566 -6.6218 -2.8641 37 1 0.3209 -8.3200 -1.5226 38 1 3.6617 -4.4394 3.5821 39 1 0.7774 -2.3909 4.0566 40 1 1.6937 -1.4005 8.1056 41 1 3.8499 -2.5703 7.9110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164259703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -85.275232 kcal Electronic energy + Delta-G solvation = -32754.244220 eV Core-core repulsion = 27852.545070 eV Total energy + Delta-G solvation = -4901.699150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.97957 -48.84329 -42.28433 -40.73639 -39.05726 -37.68778 -35.87030 -34.44113 -32.81379 -32.55513 -30.64626 -30.41973 -29.54217 -27.40521 -26.36347 -24.43710 -23.33145 -22.82489 -21.88696 -21.43183 -20.41267 -19.57780 -18.37291 -17.58086 -17.34547 -17.26337 -16.77941 -16.52755 -16.24112 -15.94930 -15.83647 -15.46040 -15.31655 -15.14401 -14.81654 -14.46336 -14.40556 -14.29247 -14.02512 -13.47068 -13.33192 -13.10947 -12.65491 -12.55869 -12.54020 -12.48603 -12.29769 -12.09151 -11.93283 -11.46320 -11.35095 -11.03356 -10.90114 -10.63190 -10.48591 -10.08552 -9.82979 -9.65867 -9.01050 -8.75353 -8.46453 -8.26147 -8.17397 -8.05147 -6.10337 -4.13087 0.82331 0.98233 1.84904 1.95851 2.56522 2.89792 3.22043 3.26593 3.32601 3.35277 3.37821 3.72884 3.88827 4.04583 4.22794 4.39330 4.51795 4.77751 4.87236 4.94980 5.08654 5.24877 5.26918 5.27704 5.36160 5.56016 5.71458 5.83693 5.85215 5.96448 6.02643 6.14964 6.18647 6.26007 6.31184 6.42520 6.73889 6.81729 7.10421 7.25702 7.31164 7.41590 7.76198 7.89671 8.05234 8.11960 8.43638 8.86428 9.50329 10.98486 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.007643 B = 0.003940 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.607872 B = 7105.212620 C = 9184.392835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.229 3.771 10 N -0.556 5.556 11 C 0.194 3.806 12 C -0.023 4.023 13 C -0.194 4.194 14 C -0.216 4.216 15 C -0.049 4.049 16 O -0.168 6.168 17 C 0.512 3.488 18 O -0.546 6.546 19 C 0.490 3.510 20 O -0.418 6.418 21 N -0.655 5.655 22 C 0.167 3.833 23 C -0.147 4.147 24 C 0.119 3.881 25 F -0.130 7.130 26 C -0.155 4.155 27 C -0.102 4.102 28 C 0.049 3.951 29 F -0.134 7.134 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.198 0.802 38 H 0.423 0.577 39 H 0.173 0.827 40 H 0.144 0.856 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -9.407 7.133 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.111 3.889 10 N -0.287 5.287 11 C 0.071 3.929 12 C -0.074 4.074 13 C -0.214 4.214 14 C -0.235 4.235 15 C -0.117 4.117 16 O -0.063 6.063 17 C 0.294 3.706 18 O -0.426 6.426 19 C 0.272 3.728 20 O -0.284 6.284 21 N -0.302 5.302 22 C 0.069 3.931 23 C -0.169 4.169 24 C 0.099 3.901 25 F -0.109 7.109 26 C -0.175 4.175 27 C -0.121 4.121 28 C 0.027 3.973 29 F -0.113 7.113 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.214 0.786 38 H 0.261 0.739 39 H 0.190 0.810 40 H 0.162 0.838 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.560 -9.184 7.147 11.915 hybrid contribution 0.408 0.719 -0.137 0.838 sum 2.968 -8.464 7.010 11.384 Atomic orbital electron populations 1.69911 1.05894 1.26890 1.49859 1.24782 0.94737 0.98837 0.94752 0.86537 0.80041 0.83778 0.77628 1.19901 1.20992 1.20880 1.21206 0.92937 0.90092 1.51447 0.92590 1.20005 0.87336 0.81673 0.99866 1.48320 1.43031 1.33440 1.03861 1.19871 0.95039 0.90507 0.87517 1.23014 1.00146 0.83288 1.00973 1.21718 0.95657 0.99379 1.04623 1.21819 1.02532 0.93519 1.05673 1.23989 0.87936 0.98603 1.01181 1.84088 1.40886 1.20788 1.60572 1.19663 0.81605 0.84279 0.85034 1.90703 1.39140 1.26374 1.86399 1.20429 0.82419 0.85383 0.84543 1.90969 1.31394 1.21675 1.84389 1.43176 1.45742 1.37496 1.03813 1.17436 0.92881 0.97422 0.85402 1.21431 0.96574 0.99907 0.98947 1.17451 0.82742 0.95707 0.94190 1.91537 1.43892 1.78995 1.96466 1.20910 0.94201 1.03321 0.99050 1.20713 0.97279 0.97771 0.96346 1.17336 0.82777 1.01987 0.95241 1.91491 1.43523 1.79656 1.96639 0.92770 0.94493 0.91811 0.86349 0.88592 0.83119 0.83723 0.78571 0.73909 0.80963 0.83832 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -13.39 7.76 -34.44 -0.27 -13.66 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.23 5.40 4.78 -5.19 -0.02 5.37 16 10 N -0.56 -11.28 2.46 -176.98 -0.44 -11.72 16 11 C 0.19 3.34 5.92 -5.19 -0.03 3.31 16 12 C -0.02 -0.39 6.90 -35.62 -0.25 -0.63 16 13 C -0.19 -3.08 10.81 -39.70 -0.43 -3.51 16 14 C -0.22 -2.99 10.91 -39.70 -0.43 -3.42 16 15 C -0.05 -0.65 12.09 29.42 0.36 -0.30 16 16 O -0.17 -2.82 10.65 5.69 0.06 -2.76 16 17 C 0.51 10.29 7.67 -11.64 -0.09 10.20 16 18 O -0.55 -11.03 16.04 5.48 0.09 -10.94 16 19 C 0.49 9.58 7.53 -11.63 -0.09 9.49 16 20 O -0.42 -9.34 9.21 5.47 0.05 -9.29 16 21 N -0.65 -10.65 5.30 -10.25 -0.05 -10.70 16 22 C 0.17 2.55 6.45 -83.66 -0.54 2.01 16 23 C -0.15 -2.38 8.71 -39.33 -0.34 -2.73 16 24 C 0.12 1.70 7.29 -39.45 -0.29 1.41 16 25 F -0.13 -1.99 17.27 2.25 0.04 -1.95 16 26 C -0.15 -1.71 10.02 -39.48 -0.40 -2.11 16 27 C -0.10 -1.08 10.02 -39.56 -0.40 -1.47 16 28 C 0.05 0.64 7.31 -39.24 -0.29 0.35 16 29 F -0.13 -1.75 16.80 2.25 0.04 -1.71 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.04 0.90 8.02 -51.93 -0.42 0.48 16 32 H 0.06 1.64 5.86 -51.93 -0.30 1.34 16 33 H 0.12 1.86 8.11 -51.93 -0.42 1.44 16 34 H 0.10 1.58 7.36 -51.93 -0.38 1.20 16 35 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.42 6.16 7.91 -40.82 -0.32 5.84 16 39 H 0.17 3.21 5.70 -52.48 -0.30 2.91 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -30.78 370.86 -6.31 -37.09 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.80 Total: 8.19 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -3.60 Total: 6.16 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.25 Total: -46.49 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.20 Total: -23.00 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.78 -6.31 -37.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164259703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.186 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds