Wall clock time and date at job start Tue Mar 31 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99968 * 2 1 4 4 H 1.48504 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46995 * 299.99580 * 3 2 1 6 6 H 1.48506 * 109.47454 * 59.99404 * 3 2 1 7 7 C 1.37881 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99878 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46847 * 179.97438 * 9 7 2 11 11 C 1.34970 * 125.97417 * 124.99927 * 10 9 7 12 12 C 1.35244 * 107.85602 * 179.74048 * 11 10 9 13 13 C 1.40401 * 107.86772 * 0.37122 * 12 11 10 14 14 N 1.40182 * 125.97239 * 179.89230 * 13 12 11 15 15 C 1.34782 * 120.00132 * 359.70798 * 14 13 12 16 16 O 1.21594 * 119.99784 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.39677 * 120.00107 * 184.52461 * 17 15 14 19 19 C 1.38762 * 120.13497 * 325.24059 * 18 17 15 20 20 C 1.38114 * 120.04978 * 180.02562 * 19 18 17 21 21 C 1.38432 * 120.32596 * 359.96914 * 20 19 18 22 22 C 1.37985 * 120.27941 * 0.02562 * 21 20 19 23 23 C 1.39328 * 119.94141 * 0.02562 * 22 21 20 24 24 C 1.48242 * 120.15769 * 179.97438 * 23 22 21 25 25 C 1.39828 * 120.91262 * 129.74523 * 24 23 22 26 26 C 1.37936 * 119.01970 * 179.74598 * 25 24 23 27 27 N 1.31948 * 120.88396 * 0.53405 * 26 25 24 28 28 C 1.31941 * 122.01621 * 359.72009 * 27 26 25 29 29 C 1.37945 * 120.88666 * 0.02562 * 28 27 26 30 30 N 1.31212 * 108.05671 * 359.62444 * 13 12 11 31 31 H 0.96997 * 119.99873 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.47400 * 59.99355 * 9 7 2 33 33 H 1.09002 * 109.46574 * 299.99211 * 9 7 2 34 34 H 1.07994 * 126.07506 * 0.02562 * 11 10 9 35 35 H 1.08000 * 126.06761 * 180.24819 * 12 11 10 36 36 H 0.97001 * 120.00104 * 179.71823 * 14 13 12 37 37 H 0.97000 * 120.00168 * 4.52510 * 17 15 14 38 38 H 1.08008 * 119.97379 * 0.02562 * 19 18 17 39 39 H 1.08000 * 119.83731 * 179.69813 * 20 19 18 40 40 H 1.08005 * 119.86131 * 180.02562 * 21 20 19 41 41 H 1.07997 * 120.02518 * 179.97438 * 22 21 20 42 42 H 1.08001 * 120.49108 * 359.97438 * 25 24 23 43 43 H 1.07996 * 119.56162 * 180.24535 * 26 25 24 44 44 H 1.07996 * 119.55970 * 180.02562 * 28 27 26 45 45 H 1.07998 * 120.49266 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2422 -4.6223 0.8953 12 6 3.2572 -5.4456 0.5474 13 6 3.8683 -4.9151 -0.5998 14 7 4.9635 -5.4666 -1.2792 15 6 5.5278 -6.6069 -0.8344 16 8 5.0865 -7.1576 0.1559 17 7 6.5810 -7.1369 -1.4873 18 6 7.1062 -8.3666 -1.0836 19 6 7.1192 -8.7111 0.2605 20 6 7.6394 -9.9272 0.6578 21 6 8.1495 -10.8090 -0.2795 22 6 8.1433 -10.4803 -1.6197 23 6 7.6222 -9.2560 -2.0330 24 6 7.6136 -8.8978 -3.4714 25 6 6.4472 -8.4376 -4.0901 26 6 6.4846 -8.1103 -5.4296 27 7 7.5977 -8.2366 -6.1268 28 6 8.7183 -8.6717 -5.5828 29 6 8.7704 -9.0163 -4.2481 30 7 3.2316 -3.8158 -0.9284 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8895 33 1 0.6242 -2.5567 0.8904 34 1 1.5777 -4.7525 1.7366 35 1 3.5475 -6.3497 1.0621 36 1 5.3154 -5.0274 -2.0693 37 1 6.9744 -6.6643 -2.2375 38 1 6.7222 -8.0276 0.9966 39 1 7.6523 -10.1898 1.7053 40 1 8.5542 -11.7582 0.0394 41 1 8.5427 -11.1711 -2.3474 42 1 5.5313 -8.3365 -3.5267 43 1 5.5898 -7.7502 -5.9153 44 1 9.6066 -8.7593 -6.1906 45 1 9.6909 -9.3722 -3.8095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170605363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:52 Heat of formation + Delta-G solvation = 129.201124 kcal Electronic energy + Delta-G solvation = -30487.167986 eV Core-core repulsion = 26279.010171 eV Total energy + Delta-G solvation = -4208.157815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35649 -40.59644 -39.95051 -38.74037 -35.25987 -34.88652 -33.78943 -33.38184 -31.60030 -31.11266 -30.28430 -29.53874 -29.23767 -26.68536 -24.49529 -24.20759 -23.51668 -22.73255 -21.89159 -21.40694 -20.41501 -19.98455 -18.39362 -17.93318 -17.35938 -16.62053 -16.60060 -16.45297 -16.17397 -15.68455 -15.48423 -15.18192 -15.05306 -14.56162 -14.28640 -14.20659 -14.06029 -13.99755 -13.92633 -13.50561 -13.09644 -12.89460 -12.40068 -12.31683 -12.14472 -11.95759 -11.81683 -11.72309 -11.11060 -10.91220 -10.72613 -10.51809 -10.32732 -10.29009 -10.12177 -9.83666 -9.77152 -9.55289 -9.52484 -8.97934 -8.66552 -8.41930 -8.17063 -7.50481 -6.27022 -4.32059 0.41111 0.75910 1.07547 1.29720 2.12997 2.52284 2.95508 3.20443 3.28153 3.33545 3.37299 3.44820 3.53755 3.73011 4.02007 4.11186 4.12003 4.31029 4.45793 4.60663 4.69672 4.77000 4.79942 5.01020 5.08298 5.16061 5.21461 5.25785 5.40357 5.43225 5.48633 5.69944 5.73377 5.80902 5.93136 6.07088 6.13904 6.16886 6.27462 6.30811 6.44902 6.47888 6.70772 6.80701 6.91218 7.04053 7.36060 7.61315 7.63372 7.70696 7.87076 8.00330 8.32101 8.58082 8.77430 9.33775 10.81772 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002091 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.656432 B =13390.672725 C =14842.758694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.285 4.285 13 C 0.272 3.728 14 N -0.637 5.637 15 C 0.714 3.286 16 O -0.547 6.547 17 N -0.683 5.683 18 C 0.192 3.808 19 C -0.119 4.119 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.083 4.083 23 C -0.091 4.091 24 C 0.003 3.997 25 C -0.163 4.163 26 C 0.104 3.896 27 N -0.486 5.486 28 C 0.100 3.900 29 C -0.162 4.162 30 N -0.303 5.303 31 H 0.267 0.733 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.409 0.591 37 H 0.407 0.593 38 H 0.149 0.851 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.825 -22.071 -4.882 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.317 4.317 13 C 0.018 3.982 14 N -0.286 5.286 15 C 0.414 3.586 16 O -0.421 6.421 17 N -0.331 5.331 18 C 0.096 3.904 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.157 4.157 22 C -0.102 4.102 23 C -0.094 4.094 24 C -0.005 4.005 25 C -0.183 4.183 26 C -0.053 4.053 27 N -0.195 5.195 28 C -0.056 4.056 29 C -0.182 4.182 30 N -0.134 5.134 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.186 0.814 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.243 0.757 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.174 0.826 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.020 -21.072 -5.709 27.682 hybrid contribution 0.705 0.568 0.665 1.123 sum 17.725 -20.503 -5.044 27.568 Atomic orbital electron populations 1.69925 1.06037 1.27553 1.49789 1.24949 0.94989 0.99574 0.94602 0.86277 0.80043 0.82468 0.77742 1.19580 1.20679 1.20747 1.21286 0.94010 0.89352 1.51995 0.91264 1.19764 0.85590 0.81283 0.99328 1.49090 1.23145 1.19765 1.17988 1.22568 1.00313 0.90107 0.96774 1.21491 1.02107 1.06301 1.01771 1.18726 0.90685 0.94280 0.94508 1.41299 1.31452 1.24596 1.31245 1.15538 0.79665 0.80437 0.83008 1.90879 1.64085 1.61608 1.25560 1.42503 1.32691 1.21161 1.36743 1.17376 0.95923 0.84648 0.92490 1.21400 0.99620 0.98425 0.94486 1.21188 0.96525 0.93335 0.99970 1.21065 1.01654 1.00199 0.92795 1.20946 0.98359 0.94656 0.96190 1.18399 1.05961 0.94872 0.90183 1.19091 0.93410 0.95635 0.92399 1.22352 0.98774 1.00700 0.96496 1.22778 0.96342 0.95215 0.90935 1.67696 0.99374 1.12749 1.39691 1.22735 0.96183 0.94137 0.92579 1.22264 0.98669 1.01965 0.95278 1.77341 1.03695 1.16108 1.16274 0.92355 0.93681 0.92462 0.81430 0.82146 0.75653 0.75667 0.83355 0.85413 0.85669 0.85559 0.84624 0.82410 0.82603 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.50 9.24 -34.44 -0.32 -14.82 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.26 6.44 6.26 -5.20 -0.03 6.41 16 10 N -0.32 -7.22 3.67 -62.57 -0.23 -7.45 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.44 9.61 -39.83 -0.38 -5.82 16 13 C 0.27 5.23 8.11 -154.37 -1.25 3.98 16 14 N -0.64 -9.30 5.45 -15.51 -0.08 -9.38 16 15 C 0.71 9.79 8.38 -86.92 -0.73 9.06 16 16 O -0.55 -8.96 10.88 5.28 0.06 -8.90 16 17 N -0.68 -7.02 4.15 -14.05 -0.06 -7.08 16 18 C 0.19 1.99 6.25 -83.45 -0.52 1.47 16 19 C -0.12 -1.29 8.69 -39.43 -0.34 -1.63 16 20 C -0.09 -0.78 10.03 -39.56 -0.40 -1.18 16 21 C -0.14 -1.01 10.03 -39.60 -0.40 -1.41 16 22 C -0.08 -0.63 9.55 -39.27 -0.37 -1.00 16 23 C -0.09 -0.81 5.53 -104.74 -0.58 -1.39 16 24 C 0.00 0.02 4.98 -104.59 -0.52 -0.50 16 25 C -0.16 -1.40 8.44 -39.10 -0.33 -1.73 16 26 C 0.10 0.90 11.17 -17.61 -0.20 0.70 16 27 N -0.49 -4.66 10.35 -13.35 -0.14 -4.80 16 28 C 0.10 0.75 11.17 -17.61 -0.20 0.56 16 29 C -0.16 -1.13 9.65 -39.09 -0.38 -1.50 16 30 N -0.30 -6.77 12.42 31.44 0.39 -6.38 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 35 H 0.16 2.96 5.91 -52.49 -0.31 2.65 16 36 H 0.41 4.83 8.84 -40.82 -0.36 4.47 16 37 H 0.41 3.34 7.67 -40.82 -0.31 3.02 16 38 H 0.15 1.86 6.19 -52.48 -0.33 1.54 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 1.21 7.71 -52.49 -0.40 0.80 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -33.07 390.09 -10.77 -43.84 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.06 Total: 8.85 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -7.24 Total: -6.40 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.62 Total: -59.44 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.06 Total: -8.90 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.07 -10.77 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170605363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.042 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds