Wall clock time and date at job start Tue Mar 31 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38364 * 119.85135 * 2 1 4 4 C 1.37945 * 120.15403 * 179.97438 * 3 2 1 5 5 C 1.39627 * 119.84571 * 359.97438 * 4 3 2 6 6 C 1.47767 * 120.14822 * 179.97438 * 5 4 3 7 7 O 1.21564 * 119.99756 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.37936 * 120.00012 * 179.97438 * 8 6 5 10 10 S 1.76209 * 125.99682 * 0.24414 * 9 8 6 11 11 C 1.76034 * 90.18301 * 180.08104 * 10 9 8 12 12 C 1.39613 * 125.10120 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00471 * 179.69585 * 12 11 10 14 14 C 1.40050 * 119.99695 * 359.41000 * 12 11 10 15 15 N 1.30824 * 120.00240 * 0.28244 * 14 12 11 16 16 Si 1.86803 * 119.99913 * 180.27706 * 14 12 11 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12 20 20 N 1.31488 * 109.80215 * 359.70133 * 11 10 9 21 21 C 1.30955 * 117.23110 * 0.23319 * 20 11 10 22 22 C 1.47972 * 122.61001 * 179.97438 * 21 20 11 23 23 C 1.39591 * 120.14384 * 144.74821 * 22 21 20 24 24 C 1.37946 * 119.85738 * 179.76714 * 23 22 21 25 25 C 1.38388 * 120.13923 * 0.50860 * 24 23 22 26 26 C 1.38386 * 120.29046 * 359.74393 * 25 24 23 27 27 C 1.37940 * 120.14909 * 0.02562 * 26 25 24 28 28 C 1.39622 * 119.70036 * 0.24904 * 5 4 3 29 29 C 1.37941 * 119.84893 * 359.51829 * 28 5 4 30 30 H 1.09007 * 109.46703 * 90.00900 * 1 2 3 31 31 H 1.08998 * 109.47100 * 209.99917 * 1 2 3 32 32 H 1.08991 * 109.47621 * 330.00730 * 1 2 3 33 33 H 1.07998 * 119.92680 * 359.96902 * 3 2 1 34 34 H 1.07996 * 120.08297 * 179.97438 * 4 3 2 35 35 H 0.97004 * 120.00191 * 0.02562 * 8 6 5 36 36 H 0.96996 * 120.00421 * 179.97438 * 15 14 12 37 37 H 1.08003 * 120.07149 * 359.97438 * 23 22 21 38 38 H 1.07996 * 119.93094 * 180.25185 * 24 23 22 39 39 H 1.07999 * 119.85317 * 179.76431 * 25 24 23 40 40 H 1.07998 * 119.92139 * 180.02562 * 26 25 24 41 41 H 1.07992 * 120.07538 * 180.02562 * 27 26 25 42 42 H 1.08005 * 120.07258 * 179.75192 * 28 5 4 43 43 H 1.08006 * 119.92458 * 180.22849 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5751 1.2073 0.0005 5 6 4.2764 0.0000 0.0016 6 6 5.7541 0.0000 0.0016 7 8 6.3618 1.0528 0.0012 8 7 6.4279 -1.1672 0.0032 9 6 7.8073 -1.1672 0.0027 10 16 8.8430 0.2584 0.0061 11 6 10.2704 -0.7717 0.0003 12 6 11.5898 -0.3152 -0.0006 13 1 12.4060 -1.0225 0.0006 14 6 11.8550 1.0599 -0.0092 15 7 10.8664 1.9167 -0.0108 16 14 13.6203 1.6707 -0.0183 17 1 14.5459 0.5095 -0.0153 18 1 13.8552 2.4873 -1.2362 19 1 13.8631 2.5009 1.1888 20 7 9.9078 -2.0356 0.0028 21 6 8.6232 -2.2904 0.0042 22 6 8.0836 -3.6682 0.0065 23 6 6.9105 -3.9604 0.7045 24 6 6.4101 -5.2458 0.6987 25 6 7.0740 -6.2469 0.0115 26 6 8.2402 -5.9650 -0.6781 27 6 8.7487 -4.6828 -0.6842 28 6 3.5751 -1.2074 -0.0031 29 6 2.1957 -1.2001 0.0012 30 1 -0.3633 -0.0002 -1.0278 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 1.6521 2.1333 -0.0005 34 1 4.1115 2.1447 0.0001 35 1 5.9429 -2.0073 0.0039 36 1 11.0500 2.8692 -0.0164 37 1 6.3941 -3.1810 1.2451 38 1 5.5004 -5.4723 1.2350 39 1 6.6801 -7.2525 0.0132 40 1 8.7532 -6.7507 -1.2127 41 1 9.6586 -4.4640 -1.2231 42 1 4.1115 -2.1448 -0.0064 43 1 1.6520 -2.1333 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170623659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:59 Heat of formation + Delta-G solvation = 35.937792 kcal Electronic energy + Delta-G solvation = -28549.143834 eV Core-core repulsion = 24649.683276 eV Total energy + Delta-G solvation = -3899.460558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.12187 -39.02034 -38.24156 -37.00380 -34.57252 -33.78904 -32.87860 -31.12158 -30.88906 -30.54611 -28.42568 -27.66609 -25.61922 -23.53654 -22.73738 -22.22235 -22.09456 -21.33095 -20.23993 -19.20778 -18.00022 -17.40966 -16.47066 -16.02301 -15.56823 -15.37490 -15.19515 -14.91904 -14.73686 -14.53217 -14.09324 -13.99441 -13.88770 -13.65054 -13.37702 -13.09212 -12.85034 -12.77973 -12.70362 -12.45657 -12.19277 -11.98369 -11.78242 -11.67155 -11.41984 -11.10575 -11.04009 -10.83753 -10.70174 -10.47746 -10.25844 -9.78327 -9.54196 -9.17423 -9.08425 -8.78737 -8.62989 -8.56399 -7.60619 -7.17362 -7.07349 -6.90928 -4.60356 0.81518 1.29083 1.53530 1.74906 2.43679 2.91610 2.94313 3.02590 3.12469 3.22462 3.62685 3.76657 3.85183 3.99381 4.05216 4.40580 4.62415 4.65293 4.83657 5.02811 5.10016 5.18320 5.23281 5.26012 5.28887 5.30769 5.33828 5.51119 5.54093 5.59281 5.80491 5.83861 5.91596 5.91922 6.21985 6.29903 6.32236 6.36408 6.40521 6.60311 6.67106 6.80750 6.82228 6.83762 7.00947 7.16154 7.33618 7.51768 7.86444 7.96279 8.31968 8.36818 8.72364 9.70981 9.82438 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008126 B = 0.003511 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3444.994333 B = 7973.902324 C =11308.800375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.129 4.129 4 C -0.057 4.057 5 C -0.121 4.121 6 C 0.522 3.478 7 O -0.511 6.511 8 N -0.598 5.598 9 C -0.185 4.185 10 S 0.213 5.787 11 C 0.167 3.833 12 C -0.367 4.367 13 H 0.102 0.898 14 C 0.052 3.948 15 N -0.780 5.780 16 Si 0.943 3.057 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.269 1.269 20 N -0.578 5.578 21 C 0.102 3.898 22 C 0.021 3.979 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.120 4.120 27 C -0.096 4.096 28 C -0.088 4.088 29 C -0.127 4.127 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.397 0.603 36 H 0.300 0.700 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 -4.966 -0.209 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.147 4.147 4 C -0.076 4.076 5 C -0.125 4.125 6 C 0.309 3.691 7 O -0.389 6.389 8 N -0.242 5.242 9 C -0.405 4.405 10 S 0.471 5.529 11 C -0.086 4.086 12 C -0.409 4.409 13 H 0.120 0.880 14 C -0.170 4.170 15 N -0.410 5.410 16 Si 0.766 3.234 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.300 5.300 21 C -0.039 4.039 22 C 0.019 3.981 23 C -0.157 4.157 24 C -0.137 4.137 25 C -0.159 4.159 26 C -0.138 4.138 27 C -0.116 4.116 28 C -0.107 4.107 29 C -0.145 4.145 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.235 0.765 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.406 -3.180 -0.205 14.754 hybrid contribution 0.037 -1.090 0.017 1.091 sum -14.369 -4.270 -0.188 14.991 Atomic orbital electron populations 1.20833 0.91030 1.02922 1.02481 1.20107 0.96204 0.93209 0.97637 1.21015 0.93813 0.97741 1.02090 1.21302 0.93739 0.97919 0.94681 1.19959 0.92780 0.94437 1.05298 1.18301 0.87079 0.84197 0.79487 1.90752 1.68379 1.30341 1.49408 1.42069 1.04128 1.08359 1.69612 1.24494 0.86517 1.02387 1.27085 1.86439 0.93182 1.00863 1.72416 1.23913 0.98276 0.89657 0.96780 1.18934 0.91244 0.91934 1.38824 0.87969 1.26189 1.01443 0.96384 0.92974 1.68589 1.33471 1.05027 1.33958 0.85648 0.79454 0.79440 0.78872 1.17926 1.19396 1.19388 1.66817 1.13070 1.18811 1.31260 1.18551 0.88751 0.89888 1.06748 1.18482 0.93109 0.91738 0.94799 1.21192 0.97095 0.96695 1.00672 1.20927 0.99884 0.92932 0.99942 1.21042 0.96512 0.98732 0.99567 1.21073 0.96403 0.96537 0.99754 1.21335 0.99646 0.91894 0.98678 1.21331 0.94570 0.97088 0.97734 1.20931 0.93700 0.97758 1.02113 0.90943 0.91395 0.91374 0.85477 0.84435 0.76459 0.88627 0.86587 0.86492 0.86742 0.86469 0.85456 0.85851 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.07 -0.72 5.89 -104.53 -0.62 -1.33 16 3 C -0.13 -1.42 9.68 -39.64 -0.38 -1.81 16 4 C -0.06 -0.81 9.60 -39.17 -0.38 -1.18 16 5 C -0.12 -1.90 5.87 -104.97 -0.62 -2.52 16 6 C 0.52 10.48 7.73 -12.37 -0.10 10.39 16 7 O -0.51 -12.08 13.91 5.31 0.07 -12.01 16 8 N -0.60 -12.04 4.88 -10.89 -0.05 -12.09 16 9 C -0.19 -4.47 7.10 -14.59 -0.10 -4.58 16 10 S 0.21 5.66 17.47 -107.50 -1.88 3.78 16 11 C 0.17 4.59 7.10 -17.19 -0.12 4.46 16 12 C -0.37 -9.52 9.42 -38.39 -0.36 -9.89 16 13 H 0.10 2.56 7.85 -52.49 -0.41 2.15 16 14 C 0.05 1.23 5.50 -17.30 -0.10 1.13 16 15 N -0.78 -19.27 10.60 55.55 0.59 -18.68 16 16 Si 0.94 17.72 29.56 -169.99 -5.03 12.69 16 17 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 N -0.58 -15.46 10.39 -9.32 -0.10 -15.56 16 21 C 0.10 2.49 6.43 -84.04 -0.54 1.95 16 22 C 0.02 0.43 5.75 -104.89 -0.60 -0.17 16 23 C -0.14 -2.31 8.27 -39.18 -0.32 -2.63 16 24 C -0.12 -1.64 10.03 -39.63 -0.40 -2.04 16 25 C -0.14 -1.87 10.04 -39.47 -0.40 -2.27 16 26 C -0.12 -1.78 10.03 -39.64 -0.40 -2.17 16 27 C -0.10 -1.78 9.66 -39.18 -0.38 -2.16 16 28 C -0.09 -1.12 9.54 -39.17 -0.37 -1.49 16 29 C -0.13 -1.33 9.68 -39.64 -0.38 -1.71 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 35 H 0.40 6.75 3.82 -40.82 -0.16 6.59 16 36 H 0.30 6.66 8.30 -40.82 -0.34 6.32 16 37 H 0.12 1.89 6.28 -52.48 -0.33 1.56 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.13 2.46 8.05 -52.49 -0.42 2.03 16 42 H 0.12 1.39 6.41 -52.48 -0.34 1.06 16 43 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -31.49 378.40 -11.46 -42.95 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.57 Total: 11.68 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -6.20 Total: -18.46 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.44 Total: -46.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.07 Total: -12.01 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.88 Total: 3.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.49 -11.46 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170623659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.885 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds