Wall clock time and date at job start Tue Mar 31 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47428 * 2 1 4 4 C 1.46963 * 110.99900 * 189.99834 * 3 2 1 5 5 C 1.53051 * 109.36055 * 183.18896 * 4 3 2 6 6 N 1.46951 * 109.36508 * 301.59743 * 5 4 3 7 7 C 1.37595 * 110.99676 * 183.18962 * 6 5 4 8 8 N 1.31756 * 125.30880 * 298.25784 * 7 6 5 9 9 C 1.33391 * 109.97366 * 180.02562 * 8 7 6 10 10 C 1.39079 * 107.55278 * 0.02562 * 9 8 7 11 11 C 1.40607 * 119.22831 * 180.02562 * 10 9 8 12 12 O 1.21869 * 120.34983 * 180.02562 * 11 10 9 13 13 N 1.34909 * 119.30106 * 359.97438 * 11 10 9 14 14 H 0.96994 * 119.49770 * 179.97438 * 13 11 10 15 15 C 1.34423 * 120.99802 * 0.02562 * 13 11 10 16 16 O 1.21598 * 119.18837 * 179.97438 * 15 13 11 17 17 N 1.34639 * 121.61761 * 359.97438 * 15 13 11 18 18 C 1.46499 * 119.97206 * 179.72930 * 17 15 13 19 19 N 1.35934 * 125.29786 * 118.26777 * 7 6 5 20 20 C 1.46503 * 126.63742 * 359.97438 * 19 7 6 21 21 C 1.50692 * 109.47267 * 266.90580 * 20 19 7 22 22 H 1.07998 * 120.00086 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00206 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99875 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00309 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47007 * 59.99821 * 25 23 21 27 27 H 1.48496 * 109.47255 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47068 * 300.00371 * 25 23 21 29 29 C 1.46954 * 110.87909 * 59.32512 * 6 5 4 30 30 C 1.46951 * 110.99956 * 313.79762 * 3 2 1 31 31 H 1.09000 * 109.47014 * 300.00073 * 1 2 3 32 32 H 1.09005 * 109.46896 * 59.99766 * 1 2 3 33 33 H 1.09001 * 109.47352 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47014 * 239.99927 * 2 1 3 35 35 H 1.09005 * 109.46896 * 120.00234 * 2 1 3 36 36 H 1.08996 * 109.48415 * 63.22059 * 4 3 2 37 37 H 1.08994 * 109.48876 * 303.15996 * 4 3 2 38 38 H 1.09004 * 109.48326 * 181.63555 * 5 4 3 39 39 H 1.08996 * 109.50528 * 61.58398 * 5 4 3 40 40 H 1.09000 * 109.46891 * 359.97438 * 18 17 15 41 41 H 1.08998 * 109.47315 * 119.99602 * 18 17 15 42 42 H 1.08995 * 109.46675 * 239.99910 * 18 17 15 43 43 H 1.08998 * 109.46538 * 26.90937 * 20 19 7 44 44 H 1.09001 * 109.46984 * 146.90277 * 20 19 7 45 45 H 0.96996 * 120.00503 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.49228 * 60.64381 * 29 6 5 47 47 H 1.09003 * 109.48838 * 180.71264 * 29 6 5 48 48 H 1.09001 * 109.49289 * 296.77751 * 30 3 2 49 49 H 1.09001 * 109.48859 * 56.84406 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4692 1.4310 -0.2382 5 6 3.9518 2.8809 -0.1516 6 7 3.2321 3.6939 -1.1419 7 6 3.6909 4.9911 -1.1418 8 7 3.6324 5.8195 -0.1189 9 6 4.1633 6.9962 -0.4546 10 6 4.5841 6.9046 -1.7770 11 6 5.1870 8.0201 -2.3845 12 8 5.5629 7.9625 -3.5424 13 7 5.3441 9.1552 -1.6725 14 1 5.7600 9.9263 -2.0886 15 6 4.9339 9.2333 -0.3948 16 8 5.0921 10.2725 0.2164 17 7 4.3520 8.1891 0.2248 18 6 3.9239 8.3121 1.6204 19 7 4.2749 5.6178 -2.1973 20 6 4.5283 5.0464 -3.5223 21 6 5.9189 4.4673 -3.5620 22 1 6.5510 4.5200 -2.6879 23 6 6.3844 3.8702 -4.7143 24 7 5.6149 3.8065 -5.7789 25 14 8.1079 3.1517 -4.7634 26 1 8.2306 2.0886 -3.7337 27 1 8.3648 2.5726 -6.1064 28 1 9.0989 4.2231 -4.4890 29 6 1.7828 3.6478 -0.9036 30 6 1.3001 2.1980 -0.9902 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.6875 1.0335 -1.2293 37 1 3.9807 0.8318 0.5150 38 1 5.0216 2.9208 -0.3567 39 1 3.7583 3.2697 0.8480 40 1 4.1576 9.3122 1.9853 41 1 2.8492 8.1426 1.6871 42 1 4.4467 7.5728 2.2272 43 1 3.8011 4.2598 -3.7237 44 1 4.4379 5.8268 -4.2778 45 1 5.9424 3.3867 -6.5897 46 1 1.5643 4.0452 0.0875 47 1 1.2712 4.2470 -1.6569 48 1 1.4939 1.8093 -1.9900 49 1 0.2302 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:57 Heat of formation + Delta-G solvation = 44.264943 kcal Electronic energy + Delta-G solvation = -34373.111441 eV Core-core repulsion = 29951.680260 eV Total energy + Delta-G solvation = -4421.431181 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 362.185 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.54472 -40.77789 -39.19957 -38.58791 -36.36200 -35.52067 -34.52784 -33.86828 -32.12270 -31.41244 -30.69802 -29.16070 -27.49263 -27.02144 -26.08048 -23.98184 -23.69407 -23.12438 -22.70519 -21.78744 -20.50340 -19.42437 -18.95564 -18.47067 -17.36322 -17.05255 -16.66714 -16.49436 -15.76579 -15.48909 -15.27967 -15.25447 -15.07125 -14.86531 -14.72660 -14.41243 -14.32803 -14.16500 -14.01308 -13.29496 -13.03984 -12.96314 -12.56111 -12.44273 -12.32382 -12.00918 -11.88645 -11.85944 -11.31472 -11.30298 -11.18323 -11.05941 -10.93314 -10.85562 -10.77530 -10.56255 -10.35808 -10.14427 -10.08043 -9.77340 -9.71584 -8.94841 -8.68944 -8.63199 -8.33261 -7.66048 -6.27150 -4.33293 1.36359 2.08596 2.21200 2.73580 2.88970 3.21421 3.25991 3.29022 3.40200 3.79200 3.81861 4.02454 4.27460 4.48765 4.81299 4.85552 4.88168 5.02176 5.09639 5.16805 5.26852 5.30895 5.35771 5.40031 5.42021 5.45431 5.50084 5.54856 5.65962 5.72989 5.80407 5.82113 5.83609 5.96944 5.98300 6.01154 6.05843 6.17966 6.27136 6.58977 6.81819 6.84092 6.96792 7.04557 7.05227 7.23921 7.39209 7.57432 7.69370 7.81545 7.83575 7.98855 8.28776 8.65754 9.31364 10.82008 Molecular weight = 362.19amu Principal moments of inertia in cm(-1) A = 0.006954 B = 0.004588 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.426488 B = 6101.722202 C = 9286.340490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.540 5.540 4 C 0.058 3.942 5 C 0.075 3.925 6 N -0.456 5.456 7 C 0.432 3.568 8 N -0.521 5.521 9 C 0.296 3.704 10 C -0.134 4.134 11 C 0.588 3.412 12 O -0.487 6.487 13 N -0.656 5.656 14 H 0.433 0.567 15 C 0.714 3.286 16 O -0.557 6.557 17 N -0.510 5.510 18 C 0.093 3.907 19 N -0.348 5.348 20 C 0.236 3.764 21 C -0.529 4.529 22 H 0.060 0.940 23 C 0.072 3.928 24 N -0.887 5.887 25 Si 0.904 3.096 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.070 3.930 30 C 0.052 3.948 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.268 0.732 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.047 0.953 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 -2.454 12.750 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.266 5.266 4 C -0.071 4.071 5 C -0.052 4.052 6 N -0.180 5.180 7 C 0.079 3.921 8 N -0.250 5.250 9 C 0.061 3.939 10 C -0.255 4.255 11 C 0.381 3.619 12 O -0.360 6.360 13 N -0.326 5.326 14 H 0.276 0.724 15 C 0.416 3.584 16 O -0.433 6.433 17 N -0.239 5.239 18 C -0.049 4.049 19 N -0.025 5.025 20 C 0.118 3.882 21 C -0.567 4.567 22 H 0.078 0.922 23 C -0.132 4.132 24 N -0.524 5.524 25 Si 0.731 3.269 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 C -0.057 4.057 30 C -0.076 4.076 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.064 -2.421 12.828 15.893 hybrid contribution 1.519 -0.064 -1.205 1.940 sum -7.545 -2.486 11.623 14.079 Atomic orbital electron populations 1.21934 0.95127 1.01782 1.02529 1.22063 0.95652 0.89114 1.00863 1.62290 1.04221 1.10726 1.49353 1.22184 0.87732 0.96103 1.01038 1.22155 0.98361 0.91503 0.93204 1.58521 1.05351 1.03138 1.51000 1.20196 0.98592 0.90557 0.82728 1.69838 1.26459 0.99979 1.28693 1.17776 0.99891 0.87827 0.88438 1.18652 1.20081 0.90774 0.95977 1.15431 0.78976 0.81558 0.85916 1.91040 1.47354 1.82128 1.15469 1.44081 1.59118 1.17236 1.12179 0.72394 1.15428 0.78441 0.83203 0.81374 1.91008 1.60879 1.27254 1.64115 1.43588 1.58136 1.08059 1.14115 1.21856 1.00852 1.04430 0.77768 1.45999 1.36132 1.06424 1.13981 1.20105 0.99040 0.95413 0.73608 1.20963 0.97848 1.38826 0.99082 0.92184 1.24826 0.98088 0.95435 0.94881 1.69895 1.36684 1.43299 1.02570 0.86447 0.83729 0.79329 0.77364 1.19985 1.20891 1.19978 1.22208 0.85054 0.96852 1.01623 1.22289 0.98592 0.92334 0.94357 0.91817 0.92235 0.92323 0.94704 0.90747 0.93139 0.89874 0.89543 0.92212 0.88469 0.90798 0.90802 0.91789 0.92165 0.92216 0.92077 0.90191 0.93456 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.18 37.16 0.34 -0.89 16 2 C 0.05 0.48 6.00 -3.83 -0.02 0.46 16 3 N -0.54 -6.20 4.86 -234.47 -1.14 -7.34 16 4 C 0.06 0.72 5.58 -3.76 -0.02 0.70 16 5 C 0.07 1.10 5.50 -3.77 -0.02 1.08 16 6 N -0.46 -7.55 4.54 -174.69 -0.79 -8.35 16 7 C 0.43 8.12 6.24 -320.33 -2.00 6.12 16 8 N -0.52 -9.23 11.08 -12.76 -0.14 -9.38 16 9 C 0.30 5.31 7.68 -154.61 -1.19 4.12 16 10 C -0.13 -2.74 6.91 -83.47 -0.58 -3.31 16 11 C 0.59 11.74 7.71 -15.31 -0.12 11.62 16 12 O -0.49 -11.39 16.92 5.04 0.09 -11.30 16 13 N -0.66 -10.54 5.20 -18.74 -0.10 -10.63 16 14 H 0.43 5.83 8.86 -40.82 -0.36 5.47 16 15 C 0.71 11.44 8.37 -87.36 -0.73 10.71 16 16 O -0.56 -9.36 16.39 5.28 0.09 -9.27 16 17 N -0.51 -7.92 3.06 -128.30 -0.39 -8.31 16 18 C 0.09 1.08 10.63 59.85 0.64 1.72 16 19 N -0.35 -7.50 2.82 -116.17 -0.33 -7.83 16 20 C 0.24 5.83 5.60 -5.20 -0.03 5.80 16 21 C -0.53 -14.18 9.39 -34.44 -0.32 -14.50 16 22 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 23 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 24 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 25 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.07 0.96 5.50 -3.77 -0.02 0.94 16 30 C 0.05 0.61 4.93 -3.77 -0.02 0.59 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 6.26 -51.93 -0.33 0.15 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.34 8.08 -51.93 -0.42 -0.07 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.39 8.13 -51.93 -0.42 0.96 16 39 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 40 H 0.10 1.06 6.85 -51.93 -0.36 0.71 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.62 8.03 -51.93 -0.42 1.20 16 44 H 0.06 1.65 7.42 -51.93 -0.39 1.26 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 47 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 0.86 5.99 -51.93 -0.31 0.55 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -31.36 398.92 -12.37 -43.73 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.19 Total: 3.78 kcal Atomic # 6 Polarization: 31.18 SS G_CDS: -4.19 Total: 26.99 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -2.15 Total: -75.96 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.36 -12.37 -43.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.998 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds