Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86793 * 120.00276 * 2 1 4 4 H 1.48498 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47234 * 299.99698 * 3 2 1 6 6 H 1.48498 * 109.47402 * 59.99296 * 3 2 1 7 7 C 1.39894 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99400 * 197.93385 * 7 2 1 9 9 C 1.41212 * 120.00211 * 17.94478 * 7 2 1 10 10 C 1.40836 * 120.17945 * 204.53798 * 9 7 2 11 11 C 1.36435 * 119.81172 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18781 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81816 * 179.97438 * 12 11 10 14 14 C 1.42905 * 116.99906 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47006 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99977 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99925 * 180.02562 * 15 14 13 18 18 N 1.40104 * 119.99954 * 180.02562 * 17 15 14 19 19 C 1.39339 * 119.99959 * 179.97438 * 18 17 15 20 20 C 1.37988 * 120.39012 * 359.71909 * 19 18 17 21 21 C 1.39153 * 120.77641 * 179.76623 * 20 19 18 22 22 C 1.36237 * 121.18742 * 0.52060 * 21 20 19 23 23 C 1.40338 * 119.82577 * 359.73955 * 22 21 20 24 24 C 1.40480 * 121.99164 * 180.02562 * 23 22 21 25 25 N 1.31228 * 119.89487 * 180.02562 * 24 23 22 26 26 C 1.32597 * 122.76123 * 359.97438 * 25 24 23 27 27 C 1.36247 * 121.84827 * 359.97438 * 26 25 24 28 28 C 1.40509 * 118.68142 * 0.02562 * 27 26 25 29 29 C 1.39318 * 120.36491 * 0.25940 * 12 11 10 30 30 C 1.36440 * 120.18431 * 359.47916 * 29 12 11 31 31 H 0.97004 * 119.99134 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.08928 * 359.97438 * 10 9 7 33 33 H 1.08002 * 119.90521 * 179.97438 * 11 10 9 34 34 H 1.08991 * 109.47136 * 300.00328 * 14 13 12 35 35 H 1.09003 * 109.46837 * 60.00823 * 14 13 12 36 36 H 0.96989 * 120.00072 * 0.02562 * 17 15 14 37 37 H 0.97002 * 119.99953 * 359.97438 * 18 17 15 38 38 H 1.07996 * 119.60531 * 0.02562 * 20 19 18 39 39 H 1.07995 * 119.40183 * 180.25892 * 21 20 19 40 40 H 1.08007 * 120.09127 * 179.72127 * 22 21 20 41 41 H 1.08007 * 120.04704 * 0.02562 * 24 23 22 42 42 H 1.07995 * 119.07590 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.66276 * 180.02562 * 27 26 25 44 44 H 1.08000 * 119.90749 * 179.72031 * 29 12 11 45 45 H 1.07993 * 120.09507 * 180.26135 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 3.7029 1.3462 0.0006 5 1 1.8843 2.3963 -1.2125 6 1 1.8842 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0489 -1.2342 0.2886 9 6 1.3536 -2.4049 -0.3757 10 6 1.8262 -3.6481 0.0876 11 6 1.1883 -4.7964 -0.2810 12 6 0.0722 -4.7416 -1.1128 13 8 -0.5561 -5.8882 -1.4751 14 6 -1.6942 -5.7620 -2.3302 15 6 -2.2565 -7.1292 -2.6229 16 8 -1.7345 -8.1145 -2.1458 17 7 -3.3396 -7.2569 -3.4148 18 7 -3.8627 -8.5279 -3.6865 19 6 -4.9828 -8.6599 -4.5048 20 6 -5.5865 -7.5439 -5.0471 21 6 -6.7025 -7.6668 -5.8693 22 6 -7.2377 -8.8867 -6.1546 23 6 -6.6568 -10.0464 -5.6187 24 6 -7.1707 -11.3268 -5.8834 25 7 -6.5950 -12.3836 -5.3601 26 6 -5.5283 -12.3055 -4.5764 27 6 -4.9542 -11.1109 -4.2606 28 6 -5.5151 -9.9338 -4.7840 29 6 -0.3989 -3.5163 -1.5794 30 6 0.2243 -2.3583 -1.2159 31 1 -0.4849 0.8402 -0.0004 32 1 2.6917 -3.6923 0.7321 33 1 1.5497 -5.7506 0.0730 34 1 -2.4535 -5.1551 -1.8372 35 1 -1.3962 -5.2840 -3.2634 36 1 -3.7568 -6.4690 -3.7966 37 1 -3.4452 -9.3160 -3.3050 38 1 -5.1857 -6.5640 -4.8343 39 1 -7.1549 -6.7788 -6.2852 40 1 -8.1070 -8.9612 -6.7913 41 1 -8.0382 -11.4411 -6.5166 42 1 -5.1026 -13.2142 -4.1773 43 1 -4.0852 -11.0696 -3.6206 44 1 -1.2622 -3.4828 -2.2276 45 1 -0.1447 -1.4090 -1.5751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170684251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 49.600943 kcal Electronic energy + Delta-G solvation = -29451.247632 eV Core-core repulsion = 25207.345344 eV Total energy + Delta-G solvation = -4243.902289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.34677 -40.16487 -38.79392 -37.97212 -36.50671 -36.02431 -33.65033 -33.44016 -31.61296 -31.22047 -29.83756 -29.60490 -28.81951 -27.35124 -24.84230 -24.54489 -24.17092 -22.18103 -21.81476 -21.14084 -20.46766 -18.82611 -18.38477 -18.03489 -17.46787 -17.22829 -16.93481 -16.37071 -16.22064 -15.52595 -15.32220 -15.07988 -14.92464 -14.72189 -14.53670 -14.31374 -14.09534 -14.04764 -13.64646 -13.18391 -13.04337 -12.92582 -12.49576 -12.25211 -12.04881 -11.90150 -11.76528 -11.68217 -11.61010 -11.21412 -11.08521 -10.70776 -10.54858 -10.21161 -10.09734 -9.87633 -9.86846 -9.57185 -9.47610 -9.12334 -9.10400 -7.76206 -7.47301 -7.13521 -6.82359 -4.34530 0.06303 0.49862 1.34583 1.55727 2.29288 2.66341 2.72687 2.87531 3.03698 3.08645 3.12887 3.46949 3.70960 3.88687 4.04129 4.08400 4.17015 4.24888 4.42237 4.50592 4.52109 4.56727 4.81164 4.97845 5.07341 5.15792 5.17657 5.24594 5.32782 5.47467 5.57677 5.64166 5.76714 5.95233 6.05409 6.15218 6.18054 6.25844 6.41601 6.56027 6.79119 6.86605 6.97504 7.18013 7.19014 7.29512 7.45869 7.61152 7.77330 7.90202 7.94840 8.04797 8.30200 8.53807 8.81190 8.88356 10.12528 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.001496 C = 0.001409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.584099 B =18718.095029 C =19866.413525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.089 3.911 10 C -0.196 4.196 11 C -0.104 4.104 12 C -0.018 4.018 13 O -0.303 6.303 14 C 0.064 3.936 15 C 0.517 3.483 16 O -0.514 6.514 17 N -0.526 5.526 18 N -0.528 5.528 19 C 0.230 3.770 20 C -0.206 4.206 21 C -0.055 4.055 22 C -0.154 4.154 23 C -0.064 4.064 24 C 0.135 3.865 25 N -0.480 5.480 26 C 0.065 3.935 27 C -0.143 4.143 28 C -0.065 4.065 29 C -0.173 4.173 30 C -0.135 4.135 31 H 0.280 0.720 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.425 0.575 37 H 0.435 0.565 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.132 0.868 44 H 0.095 0.905 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 -13.129 -12.780 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.097 0.903 9 C 0.087 3.913 10 C -0.215 4.215 11 C -0.123 4.123 12 C -0.061 4.061 13 O -0.218 6.218 14 C -0.017 4.017 15 C 0.304 3.696 16 O -0.386 6.386 17 N -0.276 5.276 18 N -0.252 5.252 19 C 0.124 3.876 20 C -0.233 4.233 21 C -0.074 4.074 22 C -0.176 4.176 23 C -0.067 4.067 24 C -0.037 4.037 25 N -0.187 5.187 26 C -0.079 4.079 27 C -0.163 4.163 28 C -0.074 4.074 29 C -0.192 4.192 30 C -0.154 4.154 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.267 0.733 37 H 0.279 0.721 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.182 0.818 42 H 0.171 0.829 43 H 0.150 0.850 44 H 0.113 0.887 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.448 -14.584 -12.328 24.562 hybrid contribution 0.491 2.016 0.145 2.080 sum -14.957 -12.568 -12.183 23.023 Atomic orbital electron populations 1.69848 1.07559 1.29083 1.35912 1.25898 0.94732 1.01331 0.92273 0.86271 0.81048 0.80947 0.78537 1.18378 1.19745 1.20023 1.19534 0.98216 0.91171 1.40076 0.90324 1.17633 0.91739 0.92219 0.89745 1.20615 1.03261 0.92110 1.05557 1.19615 0.95125 0.97868 0.99696 1.18554 0.98143 0.83246 1.06149 1.85896 1.40649 1.30908 1.64333 1.21866 0.91187 0.91554 0.97065 1.20762 0.78658 0.92448 0.77776 1.90748 1.58534 1.39512 1.49804 1.44775 1.30733 0.99500 1.52621 1.43212 1.29512 0.99020 1.53501 1.17523 0.86071 0.93495 0.90479 1.20381 1.00812 0.96635 1.05494 1.20571 0.93958 0.97858 0.94998 1.20680 1.02037 0.91231 1.03662 1.18775 0.94805 0.95927 0.97190 1.23211 0.97997 0.86438 0.96082 1.67391 1.09249 1.33799 1.08310 1.22087 0.92626 0.97413 0.95755 1.21712 1.00904 0.92950 1.00693 1.17574 0.97334 0.91593 1.00889 1.20574 1.01521 0.92837 1.04295 1.20932 0.98553 0.96452 0.99478 0.90963 0.88007 0.88272 0.89293 0.89358 0.73296 0.72069 0.85976 0.85343 0.85059 0.81773 0.82891 0.85003 0.88736 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.83 10.96 55.55 0.61 -19.22 16 2 C 0.07 1.81 5.13 -17.33 -0.09 1.72 16 3 Si 0.91 18.05 29.60 -169.99 -5.03 13.02 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.46 -11.81 9.04 -37.83 -0.34 -12.15 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.09 2.29 5.57 -106.80 -0.60 1.70 16 10 C -0.20 -4.69 9.74 -39.25 -0.38 -5.08 16 11 C -0.10 -2.38 9.92 -39.83 -0.40 -2.78 16 12 C -0.02 -0.40 6.71 -38.78 -0.26 -0.66 16 13 O -0.30 -6.06 9.65 -38.63 -0.37 -6.44 16 14 C 0.06 0.91 5.21 36.01 0.19 1.10 16 15 C 0.52 7.08 8.02 -10.98 -0.09 6.99 16 16 O -0.51 -9.15 16.34 -14.36 -0.23 -9.38 16 17 N -0.53 -5.20 6.22 31.22 0.19 -5.01 16 18 N -0.53 -5.26 6.39 32.55 0.21 -5.05 16 19 C 0.23 2.10 6.74 -83.55 -0.56 1.54 16 20 C -0.21 -1.58 9.46 -39.33 -0.37 -1.95 16 21 C -0.06 -0.36 9.93 -39.96 -0.40 -0.75 16 22 C -0.15 -1.01 9.79 -39.51 -0.39 -1.40 16 23 C -0.06 -0.54 5.74 -106.87 -0.61 -1.15 16 24 C 0.13 1.07 11.05 -16.97 -0.19 0.88 16 25 N -0.48 -4.64 10.30 -13.13 -0.14 -4.78 16 26 C 0.06 0.57 11.07 -17.94 -0.20 0.37 16 27 C -0.14 -1.24 9.58 -39.44 -0.38 -1.62 16 28 C -0.07 -0.61 5.76 -106.66 -0.61 -1.22 16 29 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 30 C -0.13 -3.31 8.64 -39.25 -0.34 -3.65 16 31 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.10 2.09 8.06 -52.49 -0.42 1.66 16 34 H 0.09 1.10 7.66 -51.93 -0.40 0.70 16 35 H 0.09 1.06 7.64 -51.93 -0.40 0.66 16 36 H 0.42 2.87 6.61 -182.61 -1.21 1.66 16 37 H 0.43 4.49 6.23 -182.59 -1.14 3.35 16 38 H 0.12 0.71 6.18 -52.49 -0.32 0.39 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 41 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.96 6.58 -52.49 -0.35 0.61 16 44 H 0.09 1.70 6.27 -52.49 -0.33 1.37 16 45 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.45 384.71 -11.88 -44.33 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.55 Total: 8.97 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -6.37 Total: -22.23 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.88 Total: -34.07 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.61 Total: -15.82 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.45 -11.88 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170684251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.932 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds