Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47175 * 2 1 4 4 C 1.50696 * 109.47228 * 120.00006 * 2 1 3 5 5 O 1.21283 * 120.00080 * 86.01821 * 4 2 1 6 6 N 1.34782 * 120.00231 * 266.01977 * 4 2 1 7 7 C 1.46504 * 119.99701 * 4.67139 * 6 4 2 8 8 C 1.50703 * 109.47432 * 85.67030 * 7 6 4 9 9 H 1.08002 * 119.99493 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00033 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00234 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99863 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47413 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47080 * 119.99917 * 12 10 8 15 15 H 1.48502 * 109.47430 * 239.99978 * 12 10 8 16 16 C 1.46499 * 120.00194 * 184.66861 * 6 4 2 17 17 C 1.50702 * 109.46867 * 90.00262 * 16 6 4 18 18 C 1.38678 * 120.41630 * 269.71828 * 17 16 6 19 19 C 1.38623 * 118.42042 * 179.78194 * 18 17 16 20 20 C 1.38229 * 119.15862 * 0.51953 * 19 18 17 21 21 N 1.31848 * 120.76475 * 359.71840 * 20 19 18 22 22 C 1.31881 * 121.72545 * 0.02562 * 21 20 19 23 23 C 1.50698 * 109.47089 * 239.99741 * 2 1 3 24 24 C 1.33355 * 125.18804 * 119.98259 * 23 2 1 25 25 C 1.38471 * 114.92993 * 179.77578 * 24 23 2 26 26 C 1.33495 * 114.88297 * 0.49271 * 25 24 23 27 27 Cl 1.73605 * 125.20952 * 179.79771 * 26 25 24 28 28 S 1.75874 * 125.19166 * 300.02621 * 23 2 1 29 29 H 1.08997 * 109.46647 * 301.93107 * 1 2 3 30 30 H 1.09000 * 109.47169 * 61.93397 * 1 2 3 31 31 H 1.09000 * 109.46885 * 181.93637 * 1 2 3 32 32 H 1.08998 * 109.46788 * 205.67422 * 7 6 4 33 33 H 1.09001 * 109.47092 * 325.66936 * 7 6 4 34 34 H 0.96995 * 120.00177 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.46751 * 209.99872 * 16 6 4 36 36 H 1.08999 * 109.47170 * 330.00114 * 16 6 4 37 37 H 1.07998 * 120.78719 * 0.02619 * 18 17 16 38 38 H 1.07997 * 120.42318 * 180.22170 * 19 18 17 39 39 H 1.08004 * 119.61503 * 179.74774 * 20 19 18 40 40 H 1.08005 * 119.61701 * 179.97438 * 22 21 20 41 41 H 1.07999 * 122.53249 * 0.05335 * 24 23 2 42 42 H 1.07998 * 122.55506 * 180.31317 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1658 -1.9158 1.2227 6 7 2.3334 -0.0062 2.3395 7 6 2.0762 1.4354 2.3841 8 6 0.6509 1.6785 2.8091 9 1 0.0015 0.8427 3.0239 10 6 0.1757 2.9677 2.9224 11 7 0.9663 3.9855 2.6603 12 14 -1.5908 3.2690 3.4498 13 1 -2.2660 1.9674 3.6854 14 1 -1.6043 4.0668 4.7022 15 1 -2.3065 4.0122 2.3817 16 6 2.9178 -0.6823 3.5004 17 6 4.4205 -0.6658 3.3873 18 6 5.0881 -1.7012 2.7506 19 6 6.4705 -1.6418 2.6662 20 6 7.1336 -0.5654 3.2252 21 7 6.4663 0.3990 3.8276 22 6 5.1510 0.3779 3.9222 23 6 2.0324 -0.7105 -1.2304 24 6 2.8020 -0.1644 -2.1727 25 6 3.1440 -1.0137 -3.2115 26 6 2.6426 -2.2473 -3.1168 27 17 2.8958 -3.5218 -4.2680 28 16 1.6921 -2.3858 -1.6433 29 1 -0.3632 0.5435 0.8722 30 1 -0.3633 0.4835 -0.9068 31 1 -0.3633 -1.0271 0.0347 32 1 2.7532 1.9033 3.0988 33 1 2.2387 1.8643 1.3953 34 1 0.6319 4.8925 2.7397 35 1 2.6163 -0.1655 4.4116 36 1 2.5673 -1.7138 3.5346 37 1 4.5436 -2.5322 2.3270 38 1 7.0227 -2.4287 2.1742 39 1 8.2109 -0.5137 3.1673 40 1 4.6390 1.1859 4.4236 41 1 3.1371 0.8612 -2.1266 42 1 3.7665 -0.7011 -4.0368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175872205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = 25.089021 kcal Electronic energy + Delta-G solvation = -27944.051450 eV Core-core repulsion = 24041.687605 eV Total energy + Delta-G solvation = -3902.363846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17740 -39.33396 -37.79816 -36.56133 -35.36291 -33.76014 -32.82315 -32.12714 -31.26552 -28.26808 -27.61213 -26.29691 -24.33103 -23.50974 -23.10951 -22.79212 -21.56560 -19.40440 -18.81762 -17.08560 -17.00469 -16.64225 -16.49849 -15.94513 -15.57139 -15.38638 -15.17425 -14.55408 -14.28486 -13.75544 -13.59451 -13.32029 -13.31165 -13.08037 -12.99159 -12.79308 -12.58911 -12.44611 -11.99402 -11.77112 -11.73486 -11.50391 -11.39505 -11.25393 -11.11573 -11.03137 -10.95156 -10.61049 -10.42913 -10.23695 -9.88588 -9.64274 -9.29851 -9.27237 -8.81425 -8.65581 -8.38446 -8.23398 -7.91878 -6.29523 -4.37275 0.94620 1.26383 1.27228 1.48791 2.07548 2.34310 2.71251 3.14608 3.18191 3.25010 3.28265 3.69602 4.14138 4.24384 4.63281 4.87168 4.98086 5.03756 5.10930 5.12939 5.22720 5.28705 5.39954 5.47680 5.57787 5.59258 5.71135 5.84966 5.99691 6.02734 6.10182 6.13038 6.26385 6.28238 6.31800 6.46890 6.51723 6.58952 6.74805 6.89720 7.05424 7.33910 7.64730 7.91598 8.11003 8.15557 8.64826 8.80610 9.30652 10.77081 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.007103 B = 0.004189 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3940.792854 B = 6682.239218 C = 9670.357326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 H 0.119 0.881 4 C 0.527 3.473 5 O -0.563 6.563 6 N -0.586 5.586 7 C 0.235 3.765 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.886 5.886 12 Si 0.892 3.108 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.160 3.840 17 C -0.146 4.146 18 C -0.056 4.056 19 C -0.180 4.180 20 C 0.090 3.910 21 N -0.489 5.489 22 C 0.115 3.885 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.117 4.117 26 C -0.177 4.177 27 Cl -0.031 7.031 28 S 0.207 5.793 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 -9.474 -6.646 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 H 0.137 0.863 4 C 0.314 3.686 5 O -0.443 6.443 6 N -0.315 5.315 7 C 0.116 3.884 8 C -0.578 4.578 9 H 0.083 0.917 10 C -0.135 4.135 11 N -0.524 5.524 12 Si 0.720 3.280 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.036 3.964 17 C -0.149 4.149 18 C -0.083 4.083 19 C -0.200 4.200 20 C -0.067 4.067 21 N -0.197 5.197 22 C -0.042 4.042 23 C -0.261 4.261 24 C -0.174 4.174 25 C -0.150 4.150 26 C -0.320 4.320 27 Cl -0.002 7.002 28 S 0.471 5.529 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.054 -10.467 -5.707 12.949 hybrid contribution -0.414 0.825 -0.969 1.338 sum 4.640 -9.642 -6.675 12.612 Atomic orbital electron populations 1.21868 0.91069 1.02318 1.04748 1.19875 0.98483 1.00139 0.87682 0.86286 1.20178 0.76812 0.87084 0.84529 1.90588 1.55673 1.14239 1.83814 1.48195 1.59213 1.11648 1.12494 1.19544 0.97025 0.73261 0.98580 1.21463 0.96433 0.92407 1.47467 0.91738 1.24913 0.97897 0.95875 0.94813 1.69920 1.35753 0.98966 1.47759 0.86522 0.84436 0.78547 0.78519 1.19549 1.20804 1.20739 1.20149 0.86627 0.99551 0.90074 1.21418 0.98203 0.95771 0.99503 1.21650 0.94083 0.98064 0.94474 1.22105 0.95276 1.00365 1.02280 1.22697 1.00128 0.89930 0.93935 1.67701 1.09540 1.26696 1.15794 1.22799 0.89373 0.96450 0.95623 1.24430 1.03868 0.97199 1.00626 1.19933 1.01375 1.01664 0.94419 1.20040 1.02536 0.91534 1.00887 1.25496 1.11994 0.94573 0.99963 1.98331 1.95721 1.49001 1.57180 1.84626 1.48117 1.09609 1.10508 0.88306 0.91867 0.92986 0.94317 0.94386 0.92412 0.89028 0.89599 0.84553 0.85275 0.83286 0.82534 0.83665 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.09 37.16 0.34 -2.01 16 2 C -0.04 -0.67 2.56 -92.92 -0.24 -0.90 16 3 H 0.12 2.12 5.76 -51.93 -0.30 1.82 16 4 C 0.53 9.84 6.64 -10.98 -0.07 9.77 16 5 O -0.56 -11.01 14.64 5.55 0.08 -10.93 16 6 N -0.59 -10.99 2.45 -176.43 -0.43 -11.43 16 7 C 0.24 4.99 4.98 -5.19 -0.03 4.97 16 8 C -0.54 -12.49 7.63 -34.44 -0.26 -12.75 16 9 H 0.06 1.52 7.56 -52.49 -0.40 1.13 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -22.70 13.29 55.43 0.74 -21.96 16 12 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 C 0.16 2.65 5.58 -5.19 -0.03 2.62 16 17 C -0.15 -2.29 5.48 -104.48 -0.57 -2.86 16 18 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 19 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 20 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 21 N -0.49 -7.78 10.36 -13.25 -0.14 -7.92 16 22 C 0.11 1.83 10.86 -17.55 -0.19 1.64 16 23 C -0.14 -2.24 4.95 -36.02 -0.18 -2.42 16 24 C -0.14 -2.04 10.01 -41.20 -0.41 -2.46 16 25 C -0.12 -1.54 10.13 -41.16 -0.42 -1.95 16 26 C -0.18 -2.42 7.10 29.07 0.21 -2.21 16 27 Cl -0.03 -0.37 29.29 -51.86 -1.52 -1.89 16 28 S 0.21 3.11 21.75 -107.50 -2.34 0.77 16 29 H 0.10 1.83 6.00 -51.93 -0.31 1.52 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.04 0.85 5.85 -51.93 -0.30 0.55 16 34 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 35 H 0.09 1.46 8.02 -51.93 -0.42 1.04 16 36 H 0.09 1.41 7.31 -51.93 -0.38 1.03 16 37 H 0.14 2.04 7.94 -52.49 -0.42 1.62 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.16 2.42 8.06 -52.48 -0.42 1.99 16 41 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -26.50 385.55 -10.79 -37.29 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.03 Total: 6.08 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.94 Total: -9.94 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.17 Total: -41.30 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.34 Total: 0.77 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.50 -10.79 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175872205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.375 kcal (2) G-P(sol) polarization free energy of solvation -26.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds