Wall clock time and date at job start Tue Mar 31 2020 05:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48505 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47370 * 299.99662 * 3 2 1 6 6 H 1.48501 * 109.47458 * 60.00027 * 3 2 1 7 7 C 1.38967 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99924 * 171.73850 * 7 2 1 9 9 N 1.36941 * 120.00136 * 351.74745 * 7 2 1 10 10 C 1.34776 * 120.00186 * 149.48379 * 9 7 2 11 11 O 1.21598 * 119.99894 * 175.24292 * 10 9 7 12 12 C 1.47550 * 119.99903 * 355.51071 * 10 9 7 13 13 C 1.39748 * 120.16860 * 320.56435 * 12 10 9 14 14 C 1.37831 * 119.88563 * 179.76122 * 13 12 10 15 15 C 1.38468 * 120.23654 * 0.48911 * 14 13 12 16 16 C 1.38303 * 120.34487 * 359.76554 * 15 14 13 17 17 Br 1.89101 * 119.95059 * 179.97438 * 16 15 14 18 18 C 1.38385 * 120.10339 * 0.02562 * 16 15 14 19 19 F 1.35096 * 120.11837 * 179.97438 * 18 16 15 20 20 C 1.39704 * 119.99794 * 329.47401 * 9 7 2 21 21 C 1.38986 * 120.07880 * 96.88352 * 20 9 7 22 22 C 1.38072 * 119.91831 * 179.81283 * 21 20 9 23 23 C 1.38312 * 120.08211 * 0.44018 * 22 21 20 24 24 C 1.38317 * 120.16079 * 359.79205 * 23 22 21 25 25 C 1.38074 * 120.07558 * 359.97438 * 24 23 22 26 26 H 0.97003 * 119.99863 * 5.03826 * 1 2 3 27 27 H 1.08001 * 120.05809 * 0.02562 * 13 12 10 28 28 H 1.08001 * 119.88813 * 180.23636 * 14 13 12 29 29 H 1.07998 * 119.83186 * 179.74218 * 15 14 13 30 30 H 1.07997 * 120.03997 * 0.02562 * 21 20 9 31 31 H 1.07997 * 119.96139 * 180.20697 * 22 21 20 32 32 H 1.08002 * 119.92332 * 179.76449 * 23 22 21 33 33 H 1.07994 * 119.95910 * 179.97438 * 24 23 22 34 34 H 1.08004 * 120.03869 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 3.7079 1.3463 -0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8892 2.3965 1.2125 7 6 2.0086 -1.2035 0.0005 8 1 3.0803 -1.2085 -0.1339 9 7 1.3345 -2.3832 0.1713 10 6 1.7954 -3.5120 -0.4031 11 8 1.2471 -4.5745 -0.1816 12 6 2.9688 -3.4594 -1.2961 13 6 3.1246 -2.3957 -2.1890 14 6 4.2255 -2.3498 -3.0170 15 6 5.1726 -3.3591 -2.9745 16 6 5.0253 -4.4190 -2.0983 17 35 6.3250 -5.7917 -2.0501 18 6 3.9276 -4.4771 -1.2576 19 9 3.7832 -5.5126 -0.4020 20 6 0.1692 -2.4167 0.9411 21 6 -1.0747 -2.3442 0.3254 22 6 -2.2244 -2.3815 1.0891 23 6 -2.1391 -2.4817 2.4660 24 6 -0.9028 -2.5492 3.0826 25 6 0.2510 -2.5173 2.3249 26 1 -0.4850 0.8368 -0.0738 27 1 2.3859 -1.6087 -2.2272 28 1 4.3480 -1.5258 -3.7044 29 1 6.0305 -3.3187 -3.6292 30 1 -1.1421 -2.2623 -0.7494 31 1 -3.1914 -2.3286 0.6112 32 1 -3.0400 -2.5068 3.0612 33 1 -0.8400 -2.6269 4.1579 34 1 1.2160 -2.5696 2.8070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192239707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:05 Heat of formation + Delta-G solvation = -4.315689 kcal Electronic energy + Delta-G solvation = -24043.094924 eV Core-core repulsion = 20288.407949 eV Total energy + Delta-G solvation = -3754.686975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 363.001 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.52489 -39.78782 -38.42971 -37.06484 -34.92507 -32.32227 -31.85635 -30.67707 -29.94852 -29.22073 -28.51333 -25.26649 -23.83739 -22.23109 -21.58485 -21.46443 -19.59428 -18.22689 -17.14804 -16.66238 -16.14307 -15.68301 -15.33677 -15.02741 -14.84415 -14.49661 -14.29166 -13.77180 -13.51234 -13.12021 -12.90302 -12.74776 -12.50016 -12.36889 -12.00696 -11.71372 -11.62975 -11.34417 -11.12265 -11.03283 -10.71132 -10.69799 -10.43116 -10.28572 -10.25465 -9.51474 -8.92684 -8.58874 -8.45745 -8.07337 -7.96061 -7.73413 -6.40365 -4.29685 1.09150 1.23941 1.61381 2.34799 2.45790 2.96211 3.08678 3.10903 3.36326 3.85416 3.96916 4.26944 4.49880 4.74340 4.90371 4.98357 5.16566 5.39947 5.49202 5.73760 5.84020 5.85143 5.95380 6.08926 6.13221 6.36165 6.51587 6.52878 6.57831 6.72521 6.94174 6.97486 7.16489 7.25008 7.39296 7.55255 7.68918 7.88278 8.26851 8.79358 9.12875 9.59302 10.42246 Molecular weight = 363.00amu Principal moments of inertia in cm(-1) A = 0.014027 B = 0.003851 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.657360 B = 7269.396260 C = 8661.981990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.050 3.950 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.352 4.352 8 H 0.101 0.899 9 N -0.398 5.398 10 C 0.506 3.494 11 O -0.576 6.576 12 C -0.118 4.118 13 C -0.020 4.020 14 C -0.145 4.145 15 C -0.059 4.059 16 C -0.147 4.147 17 Br -0.045 7.045 18 C 0.161 3.839 19 F -0.113 7.113 20 C 0.207 3.793 21 C -0.034 4.034 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.122 4.122 26 H 0.274 0.726 27 H 0.163 0.837 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -2.430 -4.910 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.159 4.159 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.478 4.478 8 H 0.118 0.882 9 N -0.113 5.113 10 C 0.296 3.704 11 O -0.460 6.460 12 C -0.123 4.123 13 C -0.038 4.038 14 C -0.164 4.164 15 C -0.079 4.079 16 C -0.228 4.228 17 Br 0.040 6.960 18 C 0.138 3.862 19 F -0.091 7.091 20 C 0.118 3.882 21 C -0.053 4.053 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.141 4.141 26 H 0.085 0.915 27 H 0.181 0.819 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.612 -3.342 -4.659 9.530 hybrid contribution 0.170 1.318 0.204 1.345 sum 7.782 -2.024 -4.455 9.192 Atomic orbital electron populations 1.69904 1.05856 1.28158 1.44091 1.25424 0.95492 0.99786 0.95222 0.85986 0.79894 0.81385 0.78359 1.18906 1.20244 1.20291 1.19648 0.92697 0.82172 1.53309 0.88167 1.40985 1.21650 1.07587 1.41116 1.17817 0.85431 0.84548 0.82616 1.90731 1.61179 1.29422 1.64640 1.20078 0.96281 0.95102 1.00860 1.21875 0.96801 0.95316 0.89857 1.21183 0.94880 0.99304 1.00994 1.21024 0.99260 0.91622 0.95959 1.21667 0.96930 0.99228 1.04933 1.96658 1.52325 1.48376 1.98611 1.17413 0.93461 0.85762 0.89528 1.91571 1.95234 1.55008 1.67267 1.17269 0.86373 0.95325 0.89246 1.20825 0.91146 0.94004 0.99370 1.20741 0.97455 1.03262 0.93786 1.20814 0.96674 1.03362 0.94702 1.20672 0.92498 1.03480 0.98481 1.21071 0.97910 1.01655 0.93481 0.91482 0.81939 0.84428 0.84525 0.87136 0.87411 0.87618 0.87417 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.22 10.00 55.50 0.55 -19.66 16 2 C 0.05 1.13 5.29 -17.47 -0.09 1.04 16 3 Si 0.92 17.86 29.56 -169.99 -5.03 12.84 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 7 C -0.35 -8.14 6.77 -15.00 -0.10 -8.25 16 8 H 0.10 2.23 6.40 -52.48 -0.34 1.90 16 9 N -0.40 -9.64 2.63 -60.06 -0.16 -9.80 16 10 C 0.51 12.28 7.13 -12.46 -0.09 12.19 16 11 O -0.58 -15.57 16.21 5.28 0.09 -15.49 16 12 C -0.12 -2.42 5.19 -104.92 -0.54 -2.97 16 13 C -0.02 -0.34 7.82 -39.17 -0.31 -0.65 16 14 C -0.14 -1.96 10.03 -39.65 -0.40 -2.36 16 15 C -0.06 -0.78 9.77 -39.47 -0.39 -1.16 16 16 C -0.15 -2.34 6.22 -39.50 -0.25 -2.59 16 17 Br -0.04 -0.62 33.28 -68.01 -2.26 -2.88 16 18 C 0.16 3.12 7.21 -38.91 -0.28 2.84 16 19 F -0.11 -2.38 15.68 2.25 0.04 -2.35 16 20 C 0.21 5.01 3.00 -83.72 -0.25 4.76 16 21 C -0.03 -0.78 7.76 -39.36 -0.31 -1.08 16 22 C -0.13 -2.67 10.04 -39.61 -0.40 -3.07 16 23 C -0.14 -2.58 10.04 -39.53 -0.40 -2.98 16 24 C -0.13 -2.61 10.04 -39.61 -0.40 -3.01 16 25 C -0.12 -2.75 9.97 -39.37 -0.39 -3.14 16 26 H 0.27 6.28 8.32 -40.82 -0.34 5.94 16 27 H 0.16 2.92 6.49 -52.49 -0.34 2.58 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.11 2.60 8.06 -52.49 -0.42 2.17 16 31 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 322.57 15.07 4.86 4.86 Total: -1.00 -27.87 322.57 -9.27 -37.14 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.77 Total: 5.78 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -4.58 Total: -10.43 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.40 Total: -29.46 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.26 Total: -2.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.87 -9.27 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192239707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.822 kcal (2) G-P(sol) polarization free energy of solvation -27.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds