Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 H 1.08995 * 109.47359 * 35.00383 * 5 4 2 7 7 C 1.53000 * 109.46858 * 155.00031 * 5 4 2 8 8 C 1.50707 * 109.47303 * 294.99890 * 7 5 4 9 9 H 1.07998 * 119.99577 * 359.97438 * 8 7 5 10 10 C 1.37873 * 120.00284 * 179.97438 * 8 7 5 11 11 N 1.31519 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47372 * 90.00376 * 12 10 8 14 14 H 1.48503 * 109.47240 * 210.00132 * 12 10 8 15 15 H 1.48497 * 109.47453 * 330.00301 * 12 10 8 16 16 C 1.50696 * 109.47291 * 274.99554 * 5 4 2 17 17 C 1.38235 * 119.99892 * 319.73561 * 16 5 4 18 18 C 1.38243 * 119.99580 * 179.78625 * 17 16 5 19 19 C 1.38232 * 120.00197 * 0.43513 * 18 17 16 20 20 C 1.38236 * 119.99749 * 359.81829 * 19 18 17 21 21 C 1.38231 * 120.00459 * 359.97007 * 20 19 18 22 22 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 23 23 C 1.34494 * 125.77932 * 259.71716 * 22 2 1 24 24 C 1.41396 * 106.84974 * 179.85501 * 23 22 2 25 25 C 1.34628 * 106.83345 * 0.40481 * 24 23 22 26 26 Br 1.89091 * 125.80222 * 179.74941 * 25 24 23 27 27 O 1.34311 * 108.39768 * 359.75600 * 25 24 23 28 28 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 30 30 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 31 31 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 32 32 H 1.08997 * 109.47474 * 54.99659 * 7 5 4 33 33 H 1.08999 * 109.47164 * 174.99854 * 7 5 4 34 34 H 0.96998 * 119.99881 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.00161 * 359.97438 * 17 16 5 36 36 H 1.08004 * 119.99813 * 180.27295 * 18 17 16 37 37 H 1.07998 * 120.00020 * 179.83511 * 19 18 17 38 38 H 1.08004 * 120.00130 * 180.02562 * 20 19 18 39 39 H 1.07993 * 120.00446 * 180.02562 * 21 20 19 40 40 H 1.08002 * 126.57833 * 0.02562 * 23 22 2 41 41 H 1.08003 * 126.58751 * 180.16329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 2.3648 1.2177 -2.0030 7 6 3.1221 -0.2850 -3.3479 8 6 4.4913 -0.2322 -2.7205 9 1 4.6082 0.1280 -1.7091 10 6 5.5946 -0.6436 -3.4377 11 7 5.4523 -1.0817 -4.6695 12 14 7.2918 -0.5774 -2.6602 13 1 7.5706 -1.8623 -1.9701 14 1 8.3114 -0.3511 -3.7159 15 1 7.3427 0.5339 -1.6765 16 6 0.7323 0.2859 -3.0135 17 6 -0.0183 -0.8650 -3.1648 18 6 -1.2587 -0.8063 -3.7723 19 6 -1.7444 0.4018 -4.2366 20 6 -0.9915 1.5517 -4.0899 21 6 0.2469 1.4939 -3.4785 22 6 2.0324 -0.7105 1.2304 23 6 2.4782 -0.1189 2.3531 24 6 2.8437 -1.1540 3.2443 25 6 2.6076 -2.3171 2.6089 26 35 2.9154 -4.0448 3.3132 27 8 2.1163 -2.0419 1.3895 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.4496 -1.4979 -1.4101 32 1 2.8886 -1.3132 -3.6243 33 1 3.1060 0.3432 -4.2385 34 1 6.2285 -1.3714 -5.1740 35 1 0.3630 -1.8095 -2.8057 36 1 -1.8471 -1.7047 -3.8866 37 1 -2.7123 0.4472 -4.7136 38 1 -1.3711 2.4957 -4.4522 39 1 0.8350 2.3923 -3.3635 40 1 2.5419 0.9430 2.5393 41 1 3.2403 -1.0345 4.2418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193039231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = 46.830441 kcal Electronic energy + Delta-G solvation = -24212.425185 eV Core-core repulsion = 20719.249472 eV Total energy + Delta-G solvation = -3493.175713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49084 -39.44563 -36.73699 -33.65985 -33.04687 -32.21677 -31.50214 -30.66728 -29.43838 -28.15195 -27.49866 -24.54534 -22.93549 -22.17874 -21.88432 -21.79225 -20.02235 -19.73861 -17.35600 -16.75432 -16.11759 -16.05010 -15.16948 -15.04674 -14.83549 -14.35770 -14.05264 -13.92077 -13.30197 -13.10820 -12.90529 -12.79769 -12.75477 -12.50243 -12.41757 -12.18168 -11.81490 -11.38548 -11.25287 -11.16305 -11.02142 -10.82760 -10.69074 -10.58086 -10.53658 -10.19329 -9.81885 -9.68686 -9.04552 -8.67095 -8.31746 -8.25489 -8.23157 -7.88013 -5.89190 -3.87553 0.95798 1.62773 1.64980 1.66533 2.59843 3.40213 3.44447 3.46135 3.49472 4.05358 4.46984 4.56402 4.92131 4.99079 5.11768 5.13844 5.20304 5.25255 5.29936 5.40301 5.48203 5.62755 5.63761 5.76388 5.78520 5.82495 5.90160 5.95235 6.02673 6.18942 6.25197 6.30887 6.43783 6.70368 6.72985 6.73718 6.90578 7.08806 7.26809 7.40761 7.59696 7.87563 7.92041 8.10520 8.53080 9.17026 9.74126 11.22560 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.003940 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.798412 B = 7104.936245 C = 9758.216933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.159 3.841 3 H 0.109 0.891 4 N -0.651 5.651 5 C 0.130 3.870 6 H 0.078 0.922 7 C 0.042 3.958 8 C -0.490 4.490 9 H 0.059 0.941 10 C 0.053 3.947 11 N -0.901 5.901 12 Si 0.889 3.111 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.275 1.275 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.118 4.118 22 C 0.057 3.943 23 C -0.223 4.223 24 C -0.152 4.152 25 C -0.042 4.042 26 Br 0.037 6.963 27 O -0.146 6.146 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.341 0.659 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.258 0.742 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.153 0.847 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 -0.020 13.752 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.127 0.873 4 N -0.282 5.282 5 C 0.021 3.979 6 H 0.096 0.904 7 C 0.005 3.995 8 C -0.529 4.529 9 H 0.077 0.923 10 C -0.147 4.147 11 N -0.542 5.542 12 Si 0.717 3.283 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.200 1.200 16 C -0.091 4.091 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.136 4.136 22 C 0.003 3.997 23 C -0.243 4.243 24 C -0.174 4.174 25 C -0.170 4.170 26 Br 0.121 6.879 27 O -0.041 6.041 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.171 0.829 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.084 -0.893 13.809 18.371 hybrid contribution 0.115 0.388 0.046 0.407 sum -11.969 -0.504 13.855 18.316 Atomic orbital electron populations 1.22651 0.95823 1.02732 1.02939 1.20276 0.92537 0.96341 0.86083 0.87349 1.60677 1.55915 1.08933 1.02630 1.21056 0.90158 0.96179 0.90522 0.90407 1.19098 0.91722 0.96565 0.92131 1.21079 0.90920 1.41451 0.99439 0.92277 1.24972 0.98951 0.95900 0.94877 1.69965 1.29888 1.44640 1.09701 0.86643 0.84474 0.78359 0.78777 1.20856 1.21576 1.20043 1.21112 0.97241 0.93054 0.97706 1.20965 0.94531 0.98133 0.99997 1.21056 0.96125 0.97558 0.98881 1.21014 0.99896 0.93053 1.01452 1.21080 0.95087 0.98077 0.99600 1.21069 0.95722 0.97713 0.99142 1.22819 1.00095 0.79544 0.97195 1.21502 1.08244 1.00501 0.94076 1.21604 1.04265 0.90083 1.01403 1.23681 1.11667 0.93650 0.88004 1.96777 1.94871 1.16038 1.80231 1.84103 1.64159 1.25336 1.30533 0.92238 0.92186 0.90789 0.83827 0.96199 0.96072 0.93279 0.86266 0.86621 0.86804 0.86645 0.86197 0.82892 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.60 37.16 0.32 -1.93 16 2 C 0.16 2.32 3.04 -68.86 -0.21 2.11 16 3 H 0.11 1.51 7.42 -51.93 -0.39 1.13 16 4 N -0.65 -11.57 5.73 -102.17 -0.59 -12.16 16 5 C 0.13 2.44 2.17 -68.87 -0.15 2.29 16 6 H 0.08 1.45 7.29 -51.93 -0.38 1.07 16 7 C 0.04 1.04 4.63 -27.88 -0.13 0.91 16 8 C -0.49 -13.53 8.84 -34.44 -0.30 -13.83 16 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 10 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 12 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 C -0.09 -1.45 2.92 -104.62 -0.31 -1.75 16 17 C -0.12 -1.80 8.43 -39.58 -0.33 -2.13 16 18 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 19 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 21 C -0.12 -1.74 9.66 -39.58 -0.38 -2.12 16 22 C 0.06 0.89 6.16 -35.63 -0.22 0.67 16 23 C -0.22 -3.06 10.80 -39.70 -0.43 -3.49 16 24 C -0.15 -2.03 10.86 -39.66 -0.43 -2.46 16 25 C -0.04 -0.62 7.80 29.45 0.23 -0.39 16 26 Br 0.04 0.46 34.09 -68.01 -2.32 -1.86 16 27 O -0.15 -2.44 10.65 5.55 0.06 -2.38 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 31 H 0.34 5.85 6.10 -39.29 -0.24 5.61 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 1.81 6.53 -52.49 -0.34 1.47 16 36 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 39 H 0.12 1.65 8.04 -52.49 -0.42 1.23 16 40 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -30.87 364.34 -10.70 -41.57 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.42 Total: 5.33 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -3.63 Total: -26.78 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.15 Total: -38.58 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: 0.06 Total: -2.38 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -2.32 Total: -1.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.87 -10.70 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.397 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds