Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 H 1.08995 * 109.47359 * 35.00383 * 5 4 2 7 7 C 1.53000 * 109.46858 * 155.00031 * 5 4 2 8 8 C 1.50707 * 109.47303 * 294.99890 * 7 5 4 9 9 H 1.07998 * 119.99577 * 359.97438 * 8 7 5 10 10 C 1.37873 * 120.00284 * 179.97438 * 8 7 5 11 11 N 1.31519 * 119.99890 * 0.02562 * 10 8 7 12 12 Si 1.86791 * 120.00032 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47372 * 90.00376 * 12 10 8 14 14 H 1.48503 * 109.47240 * 210.00132 * 12 10 8 15 15 H 1.48497 * 109.47453 * 330.00301 * 12 10 8 16 16 C 1.50696 * 109.47291 * 274.99554 * 5 4 2 17 17 C 1.38235 * 119.99892 * 319.73561 * 16 5 4 18 18 C 1.38243 * 119.99580 * 179.78625 * 17 16 5 19 19 C 1.38232 * 120.00197 * 0.43513 * 18 17 16 20 20 C 1.38236 * 119.99749 * 359.81829 * 19 18 17 21 21 C 1.38231 * 120.00459 * 359.97007 * 20 19 18 22 22 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 23 23 C 1.34494 * 125.77932 * 259.71716 * 22 2 1 24 24 C 1.41396 * 106.84974 * 179.85501 * 23 22 2 25 25 C 1.34628 * 106.83345 * 0.40481 * 24 23 22 26 26 Br 1.89091 * 125.80222 * 179.74941 * 25 24 23 27 27 O 1.34311 * 108.39768 * 359.75600 * 25 24 23 28 28 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 30 30 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 31 31 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 32 32 H 1.08997 * 109.47474 * 54.99659 * 7 5 4 33 33 H 1.08999 * 109.47164 * 174.99854 * 7 5 4 34 34 H 0.96998 * 119.99881 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.00161 * 359.97438 * 17 16 5 36 36 H 1.08004 * 119.99813 * 180.27295 * 18 17 16 37 37 H 1.07998 * 120.00020 * 179.83511 * 19 18 17 38 38 H 1.08004 * 120.00130 * 180.02562 * 20 19 18 39 39 H 1.07993 * 120.00446 * 180.02562 * 21 20 19 40 40 H 1.08002 * 126.57833 * 0.02562 * 23 22 2 41 41 H 1.08003 * 126.58751 * 180.16329 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 1 2.3648 1.2177 -2.0030 7 6 3.1221 -0.2850 -3.3479 8 6 4.4913 -0.2322 -2.7205 9 1 4.6082 0.1280 -1.7091 10 6 5.5946 -0.6436 -3.4377 11 7 5.4523 -1.0817 -4.6695 12 14 7.2918 -0.5774 -2.6602 13 1 7.5706 -1.8623 -1.9701 14 1 8.3114 -0.3511 -3.7159 15 1 7.3427 0.5339 -1.6765 16 6 0.7323 0.2859 -3.0135 17 6 -0.0183 -0.8650 -3.1648 18 6 -1.2587 -0.8063 -3.7723 19 6 -1.7444 0.4018 -4.2366 20 6 -0.9915 1.5517 -4.0899 21 6 0.2469 1.4939 -3.4785 22 6 2.0324 -0.7105 1.2304 23 6 2.4782 -0.1189 2.3531 24 6 2.8437 -1.1540 3.2443 25 6 2.6076 -2.3171 2.6089 26 35 2.9154 -4.0448 3.3132 27 8 2.1163 -2.0419 1.3895 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.4496 -1.4979 -1.4101 32 1 2.8886 -1.3132 -3.6243 33 1 3.1060 0.3432 -4.2385 34 1 6.2285 -1.3714 -5.1740 35 1 0.3630 -1.8095 -2.8057 36 1 -1.8471 -1.7047 -3.8866 37 1 -2.7123 0.4472 -4.7136 38 1 -1.3711 2.4957 -4.4522 39 1 0.8350 2.3923 -3.3635 40 1 2.5419 0.9430 2.5393 41 1 3.2403 -1.0345 4.2418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193039231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = 30.440409 kcal Electronic energy + Delta-G solvation = -24213.135910 eV Core-core repulsion = 20719.249472 eV Total energy + Delta-G solvation = -3493.886438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60603 -40.64351 -37.96469 -35.36280 -34.21618 -33.81033 -32.63212 -31.74876 -30.74299 -29.70263 -28.68742 -26.25921 -24.05971 -23.72666 -23.05479 -22.90005 -21.15160 -21.12968 -18.74273 -18.15896 -17.66128 -17.24829 -16.60080 -16.40370 -16.18653 -15.87974 -15.20562 -15.07800 -14.46264 -14.32625 -14.16712 -14.12492 -13.90327 -13.82706 -13.71923 -13.48802 -13.33673 -12.86932 -12.67892 -12.46401 -12.37488 -12.27474 -12.26124 -11.99774 -11.73836 -11.64973 -11.50107 -11.13040 -10.88347 -10.49918 -9.75572 -9.49604 -9.39099 -9.19447 -8.10344 -6.15049 -0.08931 0.51139 0.54577 0.56559 1.39501 1.41600 1.51013 1.53555 2.34792 2.45941 2.94741 3.17086 3.28687 3.76824 3.96503 3.98715 4.01097 4.16409 4.21865 4.22964 4.34473 4.52391 4.57454 4.64177 4.70640 4.77024 4.79236 4.86907 4.91543 5.01454 5.17418 5.18979 5.21260 5.39947 5.49118 5.60151 5.64368 5.67031 5.71896 5.88772 5.99533 6.18737 6.26840 6.39095 6.53569 6.98389 7.50451 9.01568 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.007428 B = 0.003940 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3768.798412 B = 7104.936245 C = 9758.216933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.163 3.837 3 H 0.114 0.886 4 N -0.672 5.672 5 C 0.148 3.852 6 H 0.077 0.923 7 C 0.051 3.949 8 C -0.495 4.495 9 H 0.058 0.942 10 C -0.003 4.003 11 N -0.939 5.939 12 Si 0.952 3.048 13 H -0.283 1.283 14 H -0.284 1.284 15 H -0.264 1.264 16 C -0.105 4.105 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.119 4.119 21 C -0.130 4.130 22 C 0.032 3.968 23 C -0.219 4.219 24 C -0.147 4.147 25 C -0.066 4.066 26 Br 0.052 6.948 27 O -0.172 6.172 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.340 0.660 32 H -0.013 1.013 33 H -0.008 1.008 34 H 0.258 0.742 35 H 0.109 0.891 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.179 0.821 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 1.155 15.070 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.052 3.948 3 H 0.132 0.868 4 N -0.302 5.302 5 C 0.039 3.961 6 H 0.095 0.905 7 C 0.014 3.986 8 C -0.534 4.534 9 H 0.076 0.924 10 C -0.200 4.200 11 N -0.581 5.581 12 Si 0.778 3.222 13 H -0.209 1.209 14 H -0.210 1.210 15 H -0.188 1.188 16 C -0.107 4.107 17 C -0.150 4.150 18 C -0.139 4.139 19 C -0.148 4.148 20 C -0.137 4.137 21 C -0.148 4.148 22 C -0.021 4.021 23 C -0.239 4.239 24 C -0.168 4.168 25 C -0.194 4.194 26 Br 0.136 6.864 27 O -0.068 6.068 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.005 0.995 33 H 0.011 0.989 34 H 0.067 0.933 35 H 0.127 0.873 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.196 0.804 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.285 0.297 15.148 20.151 hybrid contribution 0.431 -0.009 -0.353 0.557 sum -12.855 0.287 14.795 19.602 Atomic orbital electron populations 1.22492 0.93976 1.02578 1.03650 1.20298 0.93986 0.96066 0.84426 0.86820 1.60508 1.57114 1.09274 1.03322 1.20523 0.90251 0.95595 0.89766 0.90507 1.18878 0.92863 0.94213 0.92651 1.21430 0.92341 1.40365 0.99248 0.92409 1.25805 1.02922 0.95858 0.95371 1.70097 1.30876 1.45971 1.11124 0.85646 0.79992 0.78448 0.78125 1.20896 1.21012 1.18820 1.20814 0.96312 0.94318 0.99283 1.20992 0.95622 0.97426 1.00942 1.21345 0.95378 0.99101 0.98071 1.21429 1.00925 0.92285 1.00163 1.21421 0.94116 0.99644 0.98477 1.21233 0.96861 0.97270 0.99463 1.23053 1.01506 0.79482 0.98065 1.21891 1.06782 1.01844 0.93357 1.22003 1.03176 0.89326 1.02340 1.24191 1.12234 0.95124 0.87824 1.96769 1.94783 1.15101 1.79740 1.84068 1.64964 1.26139 1.31678 0.92817 0.90295 0.91021 0.83942 0.99451 0.98934 0.93320 0.87340 0.84435 0.83576 0.83777 0.85749 0.80405 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.60 71.98 0.62 -3.39 16 2 C 0.16 4.72 3.04 44.17 0.13 4.85 16 3 H 0.11 3.11 7.42 -2.39 -0.02 3.09 16 4 N -0.67 -24.61 5.73 -477.15 -2.74 -27.34 16 5 C 0.15 5.76 2.17 44.17 0.10 5.86 16 6 H 0.08 2.93 7.29 -2.39 -0.02 2.92 16 7 C 0.05 2.67 4.63 29.85 0.14 2.81 16 8 C -0.50 -28.14 8.84 25.60 0.23 -27.91 16 9 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 10 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 11 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 12 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 16 C -0.11 -3.47 2.92 -19.87 -0.06 -3.53 16 17 C -0.13 -4.05 8.43 22.27 0.19 -3.86 16 18 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 19 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 20 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 21 C -0.13 -3.74 9.66 22.27 0.22 -3.52 16 22 C 0.03 0.98 6.16 24.83 0.15 1.13 16 23 C -0.22 -5.63 10.80 22.19 0.24 -5.39 16 24 C -0.15 -3.66 10.86 22.22 0.24 -3.42 16 25 C -0.07 -1.92 7.80 66.99 0.52 -1.40 16 26 Br 0.05 1.26 34.09 -20.37 -0.69 0.56 16 27 O -0.17 -5.78 10.65 -3.04 -0.03 -5.81 16 28 H 0.05 1.33 8.13 -2.38 -0.02 1.31 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.75 5.94 -2.39 -0.01 1.74 16 31 H 0.34 12.28 6.10 -89.70 -0.55 11.73 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.11 3.48 6.53 -2.91 -0.02 3.46 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.12 3.36 8.04 -2.91 -0.02 3.34 16 40 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -68.42 364.34 3.19 -65.23 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.49 Total: 22.71 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 3.85 Total: -45.58 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.45 Total: -85.39 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.03 Total: -5.81 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 35 Polarization: 1.26 SS G_CDS: -0.69 Total: 0.56 kcal Total: -68.42 3.19 -65.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.672 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds