Wall clock time and date at job start Tue Mar 31 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 N 1.46898 * 109.47207 * 120.00392 * 2 1 3 5 5 C 1.46897 * 110.99690 * 274.99980 * 4 2 1 6 6 H 1.08997 * 109.47442 * 35.00339 * 5 4 2 7 7 C 1.53004 * 109.47029 * 155.00078 * 5 4 2 8 8 C 1.50699 * 109.46968 * 295.00051 * 7 5 4 9 9 H 1.08001 * 120.00025 * 359.97438 * 8 7 5 10 10 C 1.37880 * 120.00230 * 180.02562 * 8 7 5 11 11 N 1.31520 * 119.99738 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00466 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46499 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46978 * 119.99419 * 12 10 8 15 15 H 1.48500 * 109.47113 * 239.99916 * 12 10 8 16 16 C 1.50696 * 109.47403 * 275.00050 * 5 4 2 17 17 C 1.38230 * 120.00309 * 140.00233 * 16 5 4 18 18 C 1.38235 * 120.00326 * 179.97438 * 17 16 5 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38240 * 120.00061 * 0.07178 * 19 18 17 21 21 C 1.38234 * 120.00081 * 359.88514 * 20 19 18 22 22 C 1.50696 * 109.47150 * 240.00525 * 2 1 3 23 23 C 1.34500 * 125.78461 * 99.99707 * 22 2 1 24 24 C 1.41396 * 106.85243 * 180.02562 * 23 22 2 25 25 C 1.34615 * 106.83138 * 0.02562 * 24 23 22 26 26 Br 1.89103 * 125.79539 * 179.97438 * 25 24 23 27 27 O 1.34308 * 108.40633 * 359.73667 * 25 24 23 28 28 H 1.09006 * 109.47255 * 60.00147 * 1 2 3 29 29 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47220 * 299.99664 * 1 2 3 31 31 H 1.00902 * 110.99866 * 151.04801 * 4 2 1 32 32 H 1.09000 * 109.46993 * 54.99381 * 7 5 4 33 33 H 1.09001 * 109.47560 * 175.00381 * 7 5 4 34 34 H 0.96998 * 120.00191 * 180.02562 * 11 10 8 35 35 H 1.08000 * 120.00376 * 359.97438 * 17 16 5 36 36 H 1.08000 * 120.00616 * 179.72578 * 18 17 16 37 37 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.00107 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.00147 * 180.10835 * 21 20 19 40 40 H 1.07998 * 126.57221 * 0.02562 * 23 22 2 41 41 H 1.08000 * 126.57920 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 1 1.2576 0.9328 2.2907 7 6 1.9771 -0.5799 3.6453 8 6 0.6191 -1.2283 3.7263 9 1 -0.0972 -1.0824 2.9313 10 6 0.2908 -2.0070 4.8157 11 7 1.1630 -2.1843 5.7840 12 14 -1.3927 -2.8102 4.9165 13 1 -2.1826 -2.4570 3.7095 14 1 -1.2339 -4.2849 4.9906 15 1 -2.1000 -2.3268 6.1294 16 6 3.3911 0.9694 2.3227 17 6 3.4272 2.3113 2.6525 18 6 4.6276 2.9964 2.6309 19 6 5.7921 2.3393 2.2800 20 6 5.7559 0.9975 1.9493 21 6 4.5556 0.3123 1.9718 22 6 2.0323 -0.7103 -1.2305 23 6 2.4731 -0.1188 -2.3552 24 6 2.8433 -1.1537 -3.2446 25 6 2.6058 -2.3168 -2.6098 26 35 2.9114 -4.0445 -3.3153 27 8 2.1198 -2.0417 -1.3883 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.9174 -1.1205 1.0286 32 1 2.7486 -1.3496 3.6604 33 1 2.1124 0.0872 4.4967 34 1 0.9322 -2.7324 6.5503 35 1 2.5175 2.8247 2.9270 36 1 4.6552 4.0459 2.8842 37 1 6.7300 2.8746 2.2628 38 1 6.6657 0.4843 1.6748 39 1 4.5276 -0.7364 1.7151 40 1 2.5328 0.9431 -2.5429 41 1 3.2403 -1.0340 -4.2418 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193039250.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:31 Heat of formation + Delta-G solvation = 45.891228 kcal Electronic energy + Delta-G solvation = -24187.754605 eV Core-core repulsion = 20694.538165 eV Total energy + Delta-G solvation = -3493.216440 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.68080 -39.32029 -36.70182 -33.65017 -33.18220 -32.26117 -31.59972 -30.67572 -29.29769 -28.14074 -27.79536 -24.58430 -22.62770 -22.22795 -22.00692 -21.85876 -20.08534 -19.58384 -17.47591 -16.75007 -16.26526 -16.06515 -15.38018 -15.00497 -14.76451 -14.45140 -14.12956 -13.70170 -13.38214 -13.11625 -12.97460 -12.91967 -12.72830 -12.57990 -12.12125 -12.04693 -11.80445 -11.36424 -11.24584 -11.14349 -11.00917 -10.85995 -10.71600 -10.61809 -10.49724 -10.15035 -9.99778 -9.64637 -9.02301 -8.66123 -8.46322 -8.27774 -8.24846 -7.86238 -5.88568 -3.86786 0.82568 1.45438 1.65538 1.66596 2.40985 3.26107 3.38614 3.46382 3.50683 4.06367 4.42972 4.56491 4.81752 4.84254 5.12975 5.15209 5.23772 5.34900 5.39964 5.46708 5.47775 5.51458 5.67146 5.69632 5.78592 5.81489 5.95322 6.04716 6.14848 6.25714 6.28263 6.34824 6.56639 6.71793 6.73801 6.75345 6.89698 6.95669 7.28402 7.42131 7.61731 7.89582 7.93042 8.11531 8.54222 9.18154 9.74704 11.23329 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.007407 B = 0.003852 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.128299 B = 7268.076374 C = 9772.516211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.161 3.839 3 H 0.071 0.929 4 N -0.651 5.651 5 C 0.129 3.871 6 H 0.079 0.921 7 C 0.042 3.958 8 C -0.489 4.489 9 H 0.062 0.938 10 C 0.052 3.948 11 N -0.902 5.902 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.288 1.288 16 C -0.094 4.094 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.118 4.118 22 C 0.032 3.968 23 C -0.217 4.217 24 C -0.154 4.154 25 C -0.039 4.039 26 Br 0.042 6.958 27 O -0.140 6.140 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.338 0.662 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.257 0.743 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 4.825 -19.088 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.051 3.949 3 H 0.089 0.911 4 N -0.283 5.283 5 C 0.019 3.981 6 H 0.097 0.903 7 C 0.005 3.995 8 C -0.527 4.527 9 H 0.080 0.920 10 C -0.148 4.148 11 N -0.542 5.542 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.214 1.214 16 C -0.096 4.096 17 C -0.135 4.135 18 C -0.139 4.139 19 C -0.153 4.153 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.021 4.021 23 C -0.237 4.237 24 C -0.176 4.176 25 C -0.167 4.167 26 Br 0.126 6.874 27 O -0.035 6.035 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.172 0.828 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.104 3.594 -18.801 20.091 hybrid contribution 0.033 0.386 -0.015 0.388 sum 6.137 3.980 -18.816 20.188 Atomic orbital electron populations 1.21848 0.92720 1.03518 1.01574 1.20279 0.96732 0.93916 0.83945 0.91146 1.60820 1.33519 1.31956 1.01999 1.21072 0.90551 0.92813 0.93634 0.90292 1.19093 0.97937 0.94310 0.88155 1.21137 0.98993 1.28610 1.03970 0.92011 1.24988 0.96823 0.96947 0.96031 1.69978 1.34583 1.40214 1.09466 0.86588 0.84822 0.79213 0.77654 1.19774 1.21308 1.21445 1.21160 0.97635 0.94328 0.96484 1.21078 0.97980 0.94190 1.00234 1.21084 0.92887 0.99558 1.00370 1.21020 0.97926 0.94924 1.01476 1.21057 0.97585 0.94625 1.00343 1.20965 0.92383 0.99683 1.00617 1.22987 1.00885 0.79870 0.98384 1.21579 1.07718 1.00585 0.93856 1.21635 1.04513 0.89998 1.01466 1.23813 1.10965 0.93923 0.88035 1.96813 1.94710 1.15775 1.80101 1.84200 1.64032 1.25029 1.30271 0.92954 0.91271 0.90840 0.84109 0.96237 0.96126 0.93358 0.86172 0.86604 0.86760 0.86616 0.86350 0.82824 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.38 37.16 0.35 -1.70 16 2 C 0.16 2.41 2.88 -68.87 -0.20 2.21 16 3 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 4 N -0.65 -11.73 5.74 -102.18 -0.59 -12.32 16 5 C 0.13 2.45 1.98 -68.87 -0.14 2.32 16 6 H 0.08 1.48 6.97 -51.93 -0.36 1.12 16 7 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 8 C -0.49 -13.30 8.84 -34.44 -0.30 -13.60 16 9 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 10 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 11 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 12 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 C -0.09 -1.60 4.61 -104.63 -0.48 -2.08 16 17 C -0.12 -1.78 9.67 -39.59 -0.38 -2.16 16 18 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 19 C -0.14 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.12 -1.66 10.05 -39.58 -0.40 -2.05 16 21 C -0.12 -1.90 9.12 -39.58 -0.36 -2.26 16 22 C 0.03 0.47 5.81 -35.63 -0.21 0.26 16 23 C -0.22 -2.67 10.80 -39.70 -0.43 -3.10 16 24 C -0.15 -1.82 10.86 -39.66 -0.43 -2.25 16 25 C -0.04 -0.53 7.80 29.45 0.23 -0.30 16 26 Br 0.04 0.48 34.09 -68.01 -2.32 -1.84 16 27 O -0.14 -2.24 10.65 5.55 0.06 -2.18 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 31 H 0.34 6.03 5.97 -39.29 -0.23 5.79 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.12 1.90 6.52 -52.49 -0.34 1.56 16 40 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -30.39 368.07 -10.85 -41.23 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.49 Total: 5.60 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -3.77 Total: -26.61 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.15 Total: -38.66 kcal Atomic # 8 Polarization: -2.24 SS G_CDS: 0.06 Total: -2.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 35 Polarization: 0.48 SS G_CDS: -2.32 Total: -1.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.39 -10.85 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039250.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.123 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds