Wall clock time and date at job start Tue Mar 31 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46503 * 2 1 4 4 N 1.46897 * 109.47001 * 239.99679 * 2 1 3 5 5 C 1.46905 * 111.00060 * 85.00137 * 4 2 1 6 6 H 1.09004 * 109.46681 * 324.99913 * 5 4 2 7 7 C 1.52997 * 109.47150 * 204.99892 * 5 4 2 8 8 C 1.50701 * 109.47212 * 64.99640 * 7 5 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 5 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.50699 * 109.47256 * 84.99530 * 5 4 2 17 17 C 1.38232 * 119.99901 * 39.72627 * 16 5 4 18 18 C 1.38237 * 120.00227 * 179.80448 * 17 16 5 19 19 C 1.38239 * 119.99768 * 0.40665 * 18 17 16 20 20 C 1.38242 * 119.99786 * 359.85095 * 19 18 17 21 21 C 1.38233 * 120.00063 * 359.95930 * 20 19 18 22 22 C 1.50696 * 109.47034 * 119.99667 * 2 1 3 23 23 C 1.34501 * 125.78131 * 259.72036 * 22 2 1 24 24 C 1.41404 * 106.84873 * 179.85921 * 23 22 2 25 25 C 1.34618 * 106.82982 * 0.39989 * 24 23 22 26 26 Br 1.89102 * 125.79460 * 179.75443 * 25 24 23 27 27 O 1.34298 * 108.40586 * 359.75415 * 25 24 23 28 28 H 1.09005 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47354 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.47207 * 60.00623 * 1 2 3 31 31 H 1.00897 * 110.99719 * 208.95218 * 4 2 1 32 32 H 1.09002 * 109.47153 * 304.99641 * 7 5 4 33 33 H 1.09001 * 109.46832 * 184.99832 * 7 5 4 34 34 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 35 35 H 1.08003 * 120.00329 * 0.02562 * 17 16 5 36 36 H 1.08001 * 120.00485 * 180.23077 * 18 17 16 37 37 H 1.07993 * 120.00075 * 179.82746 * 19 18 17 38 38 H 1.07996 * 120.00086 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00261 * 180.02562 * 21 20 19 40 40 H 1.07997 * 126.57382 * 359.97438 * 23 22 2 41 41 H 1.07997 * 126.57926 * 180.16016 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 1 1.2576 0.9328 -2.2907 7 6 1.9771 -0.5798 -3.6454 8 6 0.6191 -1.2283 -3.7263 9 1 -0.0972 -1.0824 -2.9314 10 6 0.2909 -2.0070 -4.8158 11 7 1.1630 -2.1843 -5.7840 12 14 -1.3926 -2.8102 -4.9164 13 1 -2.3387 -1.8926 -5.6006 14 1 -1.2911 -4.0781 -5.6830 15 1 -1.8863 -3.0985 -3.5460 16 6 3.3911 0.9694 -2.3228 17 6 4.5545 0.3140 -1.9654 18 6 5.7556 0.9982 -1.9471 19 6 5.7919 2.3398 -2.2782 20 6 4.6276 2.9966 -2.6304 21 6 3.4272 2.3114 -2.6524 22 6 2.0324 -0.7103 1.2305 23 6 2.4781 -0.1187 2.3532 24 6 2.8436 -1.1538 3.2445 25 6 2.6075 -2.3169 2.6090 26 35 2.9152 -4.0445 3.3136 27 8 2.1162 -2.0418 1.3898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.9173 -1.1205 -1.0286 32 1 2.7487 -1.3495 -3.6605 33 1 2.1125 0.0873 -4.4967 34 1 0.9322 -2.7324 -6.5503 35 1 4.5258 -0.7335 -1.7039 36 1 6.6652 0.4852 -1.6715 37 1 6.7298 2.8750 -2.2612 38 1 4.6558 4.0448 -2.8886 39 1 2.5176 2.8244 -2.9280 40 1 2.5425 0.9432 2.5390 41 1 3.2401 -1.0342 4.2419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193039262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:34 Heat of formation + Delta-G solvation = 46.017560 kcal Electronic energy + Delta-G solvation = -24188.615907 eV Core-core repulsion = 20695.404945 eV Total energy + Delta-G solvation = -3493.210962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.68113 -39.32072 -36.70096 -33.64890 -33.18117 -32.26106 -31.59933 -30.67593 -29.29705 -28.14035 -27.79590 -24.58332 -22.62792 -22.22549 -22.00756 -21.85885 -20.08432 -19.58263 -17.47615 -16.74938 -16.26583 -16.06352 -15.37872 -15.00420 -14.76441 -14.45201 -14.13033 -13.70101 -13.38471 -13.11587 -12.97499 -12.91958 -12.72928 -12.57740 -12.11932 -12.04284 -11.80167 -11.36401 -11.24426 -11.14791 -10.99974 -10.85763 -10.71083 -10.61643 -10.51271 -10.14961 -9.99688 -9.64207 -9.03428 -8.66145 -8.46371 -8.27593 -8.24572 -7.86097 -5.88298 -3.86569 0.82613 1.45510 1.65553 1.66593 2.40998 3.26158 3.39218 3.46003 3.50651 4.06381 4.43033 4.56665 4.81796 4.84281 5.12978 5.15209 5.23787 5.34916 5.39956 5.46705 5.47876 5.51510 5.67183 5.69675 5.78559 5.81502 5.95319 6.04709 6.14789 6.25728 6.28269 6.34807 6.56539 6.71763 6.73794 6.75364 6.89829 6.95722 7.28401 7.42225 7.61776 7.89679 7.93067 8.11664 8.54365 9.18032 9.74841 11.23561 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.007407 B = 0.003852 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.099327 B = 7266.298603 C = 9770.758786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.161 3.839 3 H 0.071 0.929 4 N -0.651 5.651 5 C 0.129 3.871 6 H 0.079 0.921 7 C 0.043 3.957 8 C -0.489 4.489 9 H 0.061 0.939 10 C 0.052 3.948 11 N -0.902 5.902 12 Si 0.888 3.112 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.274 1.274 16 C -0.094 4.094 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.121 4.121 21 C -0.116 4.116 22 C 0.032 3.968 23 C -0.217 4.217 24 C -0.154 4.154 25 C -0.039 4.039 26 Br 0.042 6.958 27 O -0.140 6.140 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.338 0.662 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.257 0.743 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.154 0.846 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 4.808 19.072 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.051 3.949 3 H 0.089 0.911 4 N -0.283 5.283 5 C 0.019 3.981 6 H 0.097 0.903 7 C 0.005 3.995 8 C -0.528 4.528 9 H 0.079 0.921 10 C -0.148 4.148 11 N -0.542 5.542 12 Si 0.717 3.283 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.199 1.199 16 C -0.096 4.096 17 C -0.137 4.137 18 C -0.136 4.136 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.021 4.021 23 C -0.237 4.237 24 C -0.176 4.176 25 C -0.167 4.167 26 Br 0.126 6.874 27 O -0.035 6.035 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.172 0.828 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.118 3.570 18.783 20.074 hybrid contribution 0.021 0.400 0.020 0.402 sum 6.139 3.971 18.803 20.174 Atomic orbital electron populations 1.21850 0.92731 1.03518 1.01571 1.20279 0.96737 0.93913 0.83945 0.91144 1.60822 1.33524 1.31952 1.01996 1.21075 0.90548 0.92813 0.93637 0.90294 1.19085 0.97919 0.94300 0.88146 1.21095 0.98985 1.28721 1.03992 0.92074 1.24982 0.96811 0.96927 0.96036 1.69966 1.34594 1.40227 1.09447 0.86648 0.84871 0.78819 0.77964 1.21034 1.21563 1.19871 1.21158 0.97646 0.94329 0.96453 1.20963 0.92393 0.99700 1.00619 1.21057 0.97571 0.94627 1.00336 1.21020 0.97924 0.94910 1.01501 1.21085 0.92889 0.99571 1.00347 1.21079 0.97984 0.94171 1.00259 1.22985 1.00885 0.79866 0.98395 1.21581 1.07723 1.00581 0.93847 1.21637 1.04568 0.89998 1.01418 1.23811 1.10909 0.93925 0.88084 1.96812 1.94659 1.15776 1.80150 1.84197 1.63835 1.25027 1.30466 0.91267 0.92954 0.90841 0.84107 0.96241 0.96141 0.93303 0.86357 0.86615 0.86760 0.86604 0.86172 0.82824 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.38 37.16 0.35 -1.70 16 2 C 0.16 2.41 2.88 -68.87 -0.20 2.21 16 3 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 4 N -0.65 -11.74 5.74 -102.17 -0.59 -12.33 16 5 C 0.13 2.45 1.99 -68.86 -0.14 2.32 16 6 H 0.08 1.48 6.98 -51.93 -0.36 1.12 16 7 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 8 C -0.49 -13.33 8.84 -34.44 -0.30 -13.63 16 9 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 10 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 11 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 12 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 16 C -0.09 -1.59 4.61 -104.63 -0.48 -2.07 16 17 C -0.12 -1.90 9.12 -39.58 -0.36 -2.26 16 18 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 19 C -0.14 -1.77 10.05 -39.58 -0.40 -2.17 16 20 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 21 C -0.12 -1.78 9.67 -39.58 -0.38 -2.16 16 22 C 0.03 0.47 5.81 -35.63 -0.21 0.26 16 23 C -0.22 -2.67 10.80 -39.70 -0.43 -3.10 16 24 C -0.15 -1.82 10.86 -39.66 -0.43 -2.25 16 25 C -0.04 -0.53 7.80 29.45 0.23 -0.30 16 26 Br 0.04 0.48 34.09 -68.01 -2.32 -1.84 16 27 O -0.14 -2.24 10.65 5.58 0.06 -2.18 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 31 H 0.34 6.03 5.96 -39.29 -0.23 5.80 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 35 H 0.12 1.90 6.50 -52.48 -0.34 1.56 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 40 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -30.38 368.04 -10.84 -41.22 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.49 Total: 5.64 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.77 Total: -26.62 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.15 Total: -38.67 kcal Atomic # 8 Polarization: -2.24 SS G_CDS: 0.06 Total: -2.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 35 Polarization: 0.48 SS G_CDS: -2.32 Total: -1.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.38 -10.84 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.242 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds