Wall clock time and date at job start Tue Mar 31 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46503 * 2 1 4 4 N 1.46897 * 109.47001 * 239.99679 * 2 1 3 5 5 C 1.46905 * 111.00060 * 85.00137 * 4 2 1 6 6 H 1.09004 * 109.46681 * 324.99913 * 5 4 2 7 7 C 1.52997 * 109.47150 * 204.99892 * 5 4 2 8 8 C 1.50701 * 109.47212 * 64.99640 * 7 5 4 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 5 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47094 * 90.00289 * 12 10 8 14 14 H 1.48505 * 109.47195 * 210.00171 * 12 10 8 15 15 H 1.48493 * 109.47449 * 330.00136 * 12 10 8 16 16 C 1.50699 * 109.47256 * 84.99530 * 5 4 2 17 17 C 1.38232 * 119.99901 * 39.72627 * 16 5 4 18 18 C 1.38237 * 120.00227 * 179.80448 * 17 16 5 19 19 C 1.38239 * 119.99768 * 0.40665 * 18 17 16 20 20 C 1.38242 * 119.99786 * 359.85095 * 19 18 17 21 21 C 1.38233 * 120.00063 * 359.95930 * 20 19 18 22 22 C 1.50696 * 109.47034 * 119.99667 * 2 1 3 23 23 C 1.34501 * 125.78131 * 259.72036 * 22 2 1 24 24 C 1.41404 * 106.84873 * 179.85921 * 23 22 2 25 25 C 1.34618 * 106.82982 * 0.39989 * 24 23 22 26 26 Br 1.89102 * 125.79460 * 179.75443 * 25 24 23 27 27 O 1.34298 * 108.40586 * 359.75415 * 25 24 23 28 28 H 1.09005 * 109.46630 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47354 * 299.99925 * 1 2 3 30 30 H 1.08994 * 109.47207 * 60.00623 * 1 2 3 31 31 H 1.00897 * 110.99719 * 208.95218 * 4 2 1 32 32 H 1.09002 * 109.47153 * 304.99641 * 7 5 4 33 33 H 1.09001 * 109.46832 * 184.99832 * 7 5 4 34 34 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 35 35 H 1.08003 * 120.00329 * 0.02562 * 17 16 5 36 36 H 1.08001 * 120.00485 * 180.23077 * 18 17 16 37 37 H 1.07993 * 120.00075 * 179.82746 * 19 18 17 38 38 H 1.07996 * 120.00086 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00261 * 180.02562 * 21 20 19 40 40 H 1.07997 * 126.57382 * 359.97438 * 23 22 2 41 41 H 1.07997 * 126.57926 * 180.16016 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3469 6 1 1.2576 0.9328 -2.2907 7 6 1.9771 -0.5798 -3.6454 8 6 0.6191 -1.2283 -3.7263 9 1 -0.0972 -1.0824 -2.9314 10 6 0.2909 -2.0070 -4.8158 11 7 1.1630 -2.1843 -5.7840 12 14 -1.3926 -2.8102 -4.9164 13 1 -2.3387 -1.8926 -5.6006 14 1 -1.2911 -4.0781 -5.6830 15 1 -1.8863 -3.0985 -3.5460 16 6 3.3911 0.9694 -2.3228 17 6 4.5545 0.3140 -1.9654 18 6 5.7556 0.9982 -1.9471 19 6 5.7919 2.3398 -2.2782 20 6 4.6276 2.9966 -2.6304 21 6 3.4272 2.3114 -2.6524 22 6 2.0324 -0.7103 1.2305 23 6 2.4781 -0.1187 2.3532 24 6 2.8436 -1.1538 3.2445 25 6 2.6075 -2.3169 2.6090 26 35 2.9152 -4.0445 3.3136 27 8 2.1162 -2.0418 1.3898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.9173 -1.1205 -1.0286 32 1 2.7487 -1.3495 -3.6605 33 1 2.1125 0.0873 -4.4967 34 1 0.9322 -2.7324 -6.5503 35 1 4.5258 -0.7335 -1.7039 36 1 6.6652 0.4852 -1.6715 37 1 6.7298 2.8750 -2.2612 38 1 4.6558 4.0448 -2.8886 39 1 2.5176 2.8244 -2.9280 40 1 2.5425 0.9432 2.5390 41 1 3.2401 -1.0342 4.2419 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193039262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:33 Heat of formation + Delta-G solvation = 30.079496 kcal Electronic energy + Delta-G solvation = -24189.307033 eV Core-core repulsion = 20695.404945 eV Total energy + Delta-G solvation = -3493.902089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.71516 -40.55167 -37.97849 -35.31090 -34.27890 -33.86086 -32.65552 -31.80109 -30.64161 -29.80899 -28.87436 -26.33255 -23.76845 -23.74612 -23.19279 -22.95007 -21.20503 -20.94500 -18.80916 -18.17445 -17.67279 -17.32938 -16.64097 -16.54411 -16.17469 -15.84382 -15.41716 -14.92882 -14.60816 -14.27765 -14.19230 -14.13757 -13.89894 -13.87901 -13.62873 -13.38596 -13.26600 -12.83397 -12.70898 -12.48866 -12.39361 -12.30059 -12.19083 -12.05486 -11.73655 -11.62037 -11.47925 -11.11696 -10.95141 -10.48019 -9.79001 -9.54634 -9.44850 -9.23969 -8.08512 -6.13140 -0.12449 0.42477 0.50120 0.53505 1.41148 1.42998 1.45884 1.53744 2.23317 2.47677 2.91716 3.15155 3.28953 3.69074 3.92928 3.94505 4.00504 4.18712 4.24297 4.29065 4.31765 4.48882 4.51848 4.65896 4.68667 4.73153 4.78662 4.86837 4.94730 5.02053 5.15863 5.18630 5.33800 5.35351 5.50008 5.59152 5.62249 5.63926 5.69299 5.89027 5.92384 6.16514 6.26730 6.40513 6.52715 7.00407 7.52338 9.03652 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.007407 B = 0.003852 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.099327 B = 7266.298603 C = 9770.758786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.086 0.914 4 N -0.670 5.670 5 C 0.147 3.853 6 H 0.079 0.921 7 C 0.052 3.948 8 C -0.494 4.494 9 H 0.063 0.937 10 C -0.005 4.005 11 N -0.940 5.940 12 Si 0.953 3.047 13 H -0.273 1.273 14 H -0.290 1.290 15 H -0.268 1.268 16 C -0.115 4.115 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.128 4.128 22 C 0.007 3.993 23 C -0.201 4.201 24 C -0.144 4.144 25 C -0.060 4.060 26 Br 0.055 6.945 27 O -0.172 6.172 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.336 0.664 32 H -0.015 1.015 33 H -0.009 1.009 34 H 0.257 0.743 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.126 0.874 40 H 0.181 0.819 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 6.641 21.093 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.104 0.896 4 N -0.302 5.302 5 C 0.037 3.963 6 H 0.097 0.903 7 C 0.015 3.985 8 C -0.532 4.532 9 H 0.081 0.919 10 C -0.201 4.201 11 N -0.583 5.583 12 Si 0.780 3.220 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.193 1.193 16 C -0.116 4.116 17 C -0.153 4.153 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.147 4.147 22 C -0.046 4.046 23 C -0.221 4.221 24 C -0.166 4.166 25 C -0.188 4.188 26 Br 0.138 6.862 27 O -0.069 6.069 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.004 0.996 33 H 0.009 0.991 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.198 0.802 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.717 5.418 20.825 22.542 hybrid contribution -0.082 -0.160 -0.558 0.586 sum 6.635 5.258 20.267 21.964 Atomic orbital electron populations 1.21820 0.92848 1.02123 1.02468 1.20225 0.96531 0.94456 0.83027 0.89614 1.60670 1.33592 1.32708 1.03194 1.20546 0.92291 0.92055 0.91406 0.90310 1.18860 0.95719 0.93344 0.90582 1.21460 0.99952 1.28170 1.03630 0.91891 1.25829 1.00551 0.97809 0.95883 1.70106 1.36665 1.41346 1.10161 0.85616 0.80538 0.77804 0.78075 1.19856 1.21565 1.19299 1.20927 0.96633 0.95211 0.98866 1.20997 0.93266 0.99423 1.01610 1.21353 0.97407 0.95382 0.99795 1.21453 0.99228 0.94466 0.99513 1.21450 0.92072 1.00990 0.99094 1.21262 0.99412 0.93642 1.00370 1.22952 1.02878 0.79750 0.98984 1.21928 1.05591 1.01922 0.92678 1.22034 1.03235 0.88987 1.02335 1.24296 1.11421 0.95335 0.87733 1.96806 1.94565 1.15166 1.79637 1.84152 1.64854 1.25968 1.31902 0.93716 0.90039 0.91882 0.84380 0.99646 0.99069 0.93390 0.87608 0.84427 0.83342 0.83527 0.85600 0.80159 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.38 71.98 0.68 -3.30 16 2 C 0.17 4.98 2.88 44.17 0.13 5.11 16 3 H 0.09 2.29 7.63 -2.39 -0.02 2.27 16 4 N -0.67 -25.11 5.74 -477.15 -2.74 -27.85 16 5 C 0.15 5.83 1.99 44.17 0.09 5.91 16 6 H 0.08 3.06 6.98 -2.39 -0.02 3.04 16 7 C 0.05 2.74 4.63 29.85 0.14 2.88 16 8 C -0.49 -27.91 8.84 25.60 0.23 -27.68 16 9 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 10 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 11 N -0.94 -58.55 13.29 21.45 0.28 -58.27 16 12 Si 0.95 45.98 29.54 68.60 2.03 48.01 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 C -0.11 -3.94 4.61 -19.87 -0.09 -4.03 16 17 C -0.13 -4.37 9.12 22.27 0.20 -4.16 16 18 C -0.12 -3.20 10.05 22.27 0.22 -2.98 16 19 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 20 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 21 C -0.13 -3.82 9.67 22.27 0.22 -3.60 16 22 C 0.01 0.20 5.81 24.83 0.14 0.34 16 23 C -0.20 -4.46 10.80 22.19 0.24 -4.22 16 24 C -0.14 -3.06 10.86 22.22 0.24 -2.82 16 25 C -0.06 -1.57 7.80 66.99 0.52 -1.05 16 26 Br 0.05 1.20 34.09 -20.37 -0.69 0.50 16 27 O -0.17 -5.54 10.65 -2.95 -0.03 -5.57 16 28 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.95 7.43 -2.39 -0.02 1.93 16 31 H 0.34 12.66 5.96 -89.70 -0.53 12.12 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.11 3.60 6.50 -2.91 -0.02 3.58 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.13 3.48 8.04 -2.91 -0.02 3.46 16 40 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -68.44 368.04 3.21 -65.23 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.50 Total: 22.74 kcal Atomic # 6 Polarization: -48.65 SS G_CDS: 3.86 Total: -44.79 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.45 Total: -86.12 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.03 Total: -5.57 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 35 Polarization: 1.20 SS G_CDS: -0.69 Total: 0.50 kcal Total: -68.44 3.21 -65.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.311 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds