Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47124 * 2 1 4 4 N 1.46900 * 109.47568 * 120.00247 * 2 1 3 5 5 C 1.46896 * 110.99993 * 274.95805 * 4 2 1 6 6 H 1.09008 * 109.47395 * 34.00171 * 5 4 2 7 7 C 1.53002 * 109.47228 * 274.00033 * 5 4 2 8 8 C 1.50700 * 109.47180 * 174.69387 * 7 5 4 9 9 H 1.07998 * 120.00203 * 355.34474 * 8 7 5 10 10 C 1.37876 * 119.99569 * 175.33904 * 8 7 5 11 11 N 1.31522 * 119.99992 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00407 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47449 * 89.99592 * 12 10 8 14 14 H 1.48496 * 109.47582 * 209.99639 * 12 10 8 15 15 H 1.48502 * 109.46939 * 329.99777 * 12 10 8 16 16 C 1.50702 * 109.47478 * 154.00010 * 5 4 2 17 17 C 1.38241 * 119.99714 * 39.72728 * 16 5 4 18 18 C 1.38228 * 120.00035 * 179.78896 * 17 16 5 19 19 C 1.38237 * 120.00130 * 0.44036 * 18 17 16 20 20 C 1.38241 * 119.99642 * 359.80966 * 19 18 17 21 21 C 1.38226 * 120.00449 * 219.99911 * 16 5 4 22 22 C 1.50698 * 109.47234 * 240.00356 * 2 1 3 23 23 C 1.34501 * 125.78459 * 100.27330 * 22 2 1 24 24 C 1.41393 * 106.85390 * 180.14197 * 23 22 2 25 25 C 1.34621 * 106.82884 * 359.60657 * 24 23 22 26 26 Br 1.89107 * 125.79744 * 180.22430 * 25 24 23 27 27 O 1.34303 * 108.40369 * 0.23903 * 25 24 23 28 28 H 1.09002 * 109.47140 * 299.99949 * 1 2 3 29 29 H 1.09001 * 109.47300 * 59.99635 * 1 2 3 30 30 H 1.08996 * 109.47330 * 180.02562 * 1 2 3 31 31 H 1.00895 * 111.00245 * 151.00011 * 4 2 1 32 32 H 1.08998 * 109.46954 * 294.69742 * 7 5 4 33 33 H 1.09002 * 109.46600 * 54.69919 * 7 5 4 34 34 H 0.96992 * 119.99791 * 180.02562 * 11 10 8 35 35 H 1.08003 * 119.99915 * 359.97438 * 17 16 5 36 36 H 1.07998 * 119.99942 * 180.27126 * 18 17 16 37 37 H 1.07995 * 120.00230 * 179.83513 * 19 18 17 38 38 H 1.07995 * 119.99734 * 179.97438 * 20 19 18 39 39 H 1.08003 * 120.00214 * 359.97438 * 21 16 5 40 40 H 1.08003 * 126.57085 * 0.02562 * 23 22 2 41 41 H 1.07994 * 126.58583 * 179.87723 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0835 0.2227 2.3466 6 1 1.2694 0.9447 2.2812 7 6 3.4230 0.9621 2.3353 8 6 3.4368 1.9934 3.4341 9 1 2.5503 2.1621 4.0275 10 6 4.5811 2.7215 3.6818 11 7 4.5934 3.6212 4.6410 12 14 6.1141 2.4301 2.6550 13 1 6.0964 3.3287 1.4729 14 1 7.3199 2.7135 3.4741 15 1 6.1449 1.0163 2.2016 16 6 1.9551 -0.5646 3.6252 17 6 2.5862 -1.7882 3.7498 18 6 2.4721 -2.5083 4.9241 19 6 1.7193 -2.0092 5.9706 20 6 1.0840 -0.7880 5.8441 21 6 1.2017 -0.0659 4.6713 22 6 2.0323 -0.7103 -1.2305 23 6 2.4780 -0.1188 -2.3532 24 6 2.8436 -1.1538 -3.2445 25 6 2.6074 -2.3168 -2.6091 26 35 2.9147 -4.0446 -3.3138 27 8 2.1162 -2.0417 -1.3897 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.9170 -1.1211 1.0284 32 1 4.2324 0.2499 2.4952 33 1 3.5576 1.4552 1.3726 34 1 5.3983 4.1336 4.8150 35 1 3.1710 -2.1800 2.9306 36 1 2.9687 -3.4622 5.0230 37 1 1.6280 -2.5731 6.8871 38 1 0.4955 -0.3983 6.6615 39 1 0.7053 0.8882 4.5725 40 1 2.5422 0.9432 -2.5391 41 1 3.2405 -1.0342 -4.2417 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193039273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = 45.130490 kcal Electronic energy + Delta-G solvation = -24085.464892 eV Core-core repulsion = 20592.215463 eV Total energy + Delta-G solvation = -3493.249428 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.76785 -38.99639 -36.89482 -33.77170 -33.28172 -32.32407 -31.68273 -30.31147 -29.35499 -28.63828 -27.93234 -24.59918 -22.53327 -22.11250 -22.01385 -21.65664 -20.17480 -19.55056 -17.53979 -16.90612 -16.36905 -16.29320 -15.44578 -15.03859 -14.55815 -14.24715 -14.09519 -13.71883 -13.41214 -13.07055 -13.01996 -12.88303 -12.75771 -12.67572 -12.26529 -12.16024 -11.75620 -11.60942 -11.53682 -11.45596 -11.14996 -10.86634 -10.78826 -10.54944 -10.39195 -10.08161 -10.03546 -9.85230 -9.29241 -8.61246 -8.54317 -8.27136 -8.21829 -7.85929 -6.09967 -4.08283 0.72221 1.36025 2.04194 2.05838 2.35213 3.15928 3.23703 3.32907 3.34524 4.20744 4.38572 4.49808 4.72243 4.77302 5.20870 5.26685 5.29541 5.39896 5.46665 5.48079 5.57610 5.61052 5.64235 5.71383 5.81101 5.93753 5.95053 6.13416 6.18144 6.22042 6.30416 6.30734 6.59787 6.64802 6.75752 6.88625 7.02938 7.08257 7.08903 7.22106 7.45170 7.61203 7.65642 7.74252 8.44818 8.94434 9.51869 11.03001 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.003172 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.489078 B = 8825.605444 C =10138.711177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.161 3.839 3 H 0.086 0.914 4 N -0.680 5.680 5 C 0.130 3.870 6 H 0.084 0.916 7 C -0.034 4.034 8 C -0.513 4.513 9 H 0.078 0.922 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.872 3.128 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.267 1.267 16 C -0.025 4.025 17 C -0.105 4.105 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.099 4.099 22 C 0.027 3.973 23 C -0.211 4.211 24 C -0.152 4.152 25 C -0.040 4.040 26 Br 0.043 6.957 27 O -0.145 6.145 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.342 0.658 32 H 0.022 0.978 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.157 0.843 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.188 -13.551 -14.707 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.052 3.948 3 H 0.103 0.897 4 N -0.311 5.311 5 C 0.022 3.978 6 H 0.102 0.898 7 C -0.073 4.073 8 C -0.551 4.551 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.700 3.300 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.026 4.026 17 C -0.123 4.123 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.026 4.026 23 C -0.232 4.232 24 C -0.173 4.173 25 C -0.169 4.169 26 Br 0.126 6.874 27 O -0.040 6.040 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.175 0.825 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.672 -14.538 -14.494 21.586 hybrid contribution 1.912 0.979 -0.643 2.242 sum -4.761 -13.559 -15.137 20.872 Atomic orbital electron populations 1.21833 0.92818 1.02906 1.02022 1.20254 0.96395 0.94913 0.83269 0.89690 1.60840 1.33766 1.33158 1.03332 1.20607 0.99894 0.91111 0.86202 0.89817 1.20233 0.92828 0.96522 0.97718 1.20952 0.99913 1.18177 1.16084 0.90375 1.24965 0.98425 0.94780 0.94837 1.69895 1.28780 1.24101 1.30949 0.86899 0.83455 0.79072 0.80563 1.20395 1.21295 1.19161 1.19530 0.94661 0.93538 0.94836 1.20782 0.99631 0.94858 0.97063 1.20957 0.99932 0.99735 0.93996 1.20924 0.99378 0.96747 0.98467 1.20982 1.00470 0.95173 0.97501 1.20931 0.98741 0.98885 0.93144 1.22922 1.01503 0.79773 0.98404 1.21663 1.06879 1.00882 0.93742 1.21680 1.04155 0.89990 1.01522 1.23792 1.11135 0.93931 0.88013 1.96815 1.94732 1.15584 1.80238 1.84135 1.64214 1.25076 1.30622 0.91152 0.92345 0.91717 0.83929 0.95943 0.97033 0.92720 0.87005 0.87146 0.87199 0.86906 0.86429 0.82485 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.38 37.16 0.35 -1.35 16 2 C 0.16 2.25 2.87 -68.87 -0.20 2.05 16 3 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 4 N -0.68 -10.79 5.48 -102.17 -0.56 -11.35 16 5 C 0.13 2.40 2.02 -68.86 -0.14 2.27 16 6 H 0.08 1.54 6.98 -51.92 -0.36 1.18 16 7 C -0.03 -0.76 3.49 -27.88 -0.10 -0.86 16 8 C -0.51 -13.69 9.08 -34.44 -0.31 -14.01 16 9 H 0.08 2.22 6.98 -52.49 -0.37 1.85 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 11 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 12 Si 0.87 21.29 27.56 -169.99 -4.69 16.60 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.31 6.41 56.52 0.36 -5.95 16 16 C -0.03 -0.47 4.49 -104.62 -0.47 -0.94 16 17 C -0.10 -1.87 9.33 -39.58 -0.37 -2.24 16 18 C -0.13 -2.09 10.05 -39.59 -0.40 -2.48 16 19 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 20 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 21 C -0.10 -1.83 8.79 -39.59 -0.35 -2.18 16 22 C 0.03 0.37 5.81 -35.63 -0.21 0.16 16 23 C -0.21 -2.58 10.80 -39.70 -0.43 -3.01 16 24 C -0.15 -1.74 10.86 -39.66 -0.43 -2.17 16 25 C -0.04 -0.51 7.80 29.45 0.23 -0.28 16 26 Br 0.04 0.44 34.09 -68.01 -2.32 -1.88 16 27 O -0.14 -2.08 10.65 5.58 0.06 -2.02 16 28 H 0.07 0.88 7.44 -51.93 -0.39 0.49 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.34 5.57 7.48 -39.29 -0.29 5.27 16 32 H 0.02 0.52 6.87 -51.93 -0.36 0.16 16 33 H 0.01 0.25 7.11 -51.93 -0.37 -0.12 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.11 1.88 7.27 -52.48 -0.38 1.49 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.12 2.15 7.84 -52.48 -0.41 1.74 16 40 H 0.16 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -29.81 362.70 -10.41 -40.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.43 Total: 7.32 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.71 Total: -28.17 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.21 Total: -37.53 kcal Atomic # 8 Polarization: -2.08 SS G_CDS: 0.06 Total: -2.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.69 Total: 16.60 kcal Atomic # 35 Polarization: 0.44 SS G_CDS: -2.32 Total: -1.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.81 -10.41 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193039273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.348 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds