Wall clock time and date at job start Tue Mar 31 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48500 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46937 * 299.99826 * 3 2 1 6 6 H 1.48494 * 109.47121 * 60.00225 * 3 2 1 7 7 C 1.39935 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99872 * 187.98537 * 7 2 1 9 9 C 1.41435 * 120.00094 * 7.99562 * 7 2 1 10 10 C 1.40794 * 120.17650 * 211.51046 * 9 7 2 11 11 C 1.37713 * 120.04296 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.41333 * 359.71746 * 11 10 9 13 13 C 1.39891 * 120.35901 * 0.56382 * 12 11 10 14 14 C 1.47852 * 120.03099 * 179.71679 * 13 12 11 15 15 O 1.21558 * 120.00385 * 194.57901 * 14 13 12 16 16 N 1.34772 * 119.99927 * 14.57670 * 14 13 12 17 17 C 1.46498 * 120.00298 * 5.84881 * 16 14 13 18 18 C 1.50701 * 109.47396 * 260.44658 * 17 16 14 19 19 C 1.38424 * 122.53613 * 303.11270 * 18 17 16 20 20 C 1.33394 * 114.91900 * 179.75542 * 19 18 17 21 21 S 1.75889 * 109.59288 * 0.48221 * 20 19 18 22 22 C 1.33384 * 122.54155 * 123.39855 * 18 17 16 23 23 C 1.39874 * 120.00221 * 185.84866 * 16 14 13 24 24 C 1.39300 * 120.48918 * 51.76784 * 23 16 14 25 25 C 1.38504 * 118.35960 * 179.97438 * 24 23 16 26 26 C 1.38269 * 119.23597 * 0.26039 * 25 24 23 27 27 N 1.31857 * 120.92865 * 359.47048 * 26 25 24 28 28 C 1.31825 * 121.79251 * 0.53673 * 27 26 25 29 29 C 1.39049 * 119.94619 * 359.43810 * 13 12 11 30 30 H 0.97003 * 119.99622 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.97730 * 359.97438 * 10 9 7 32 32 H 1.07995 * 119.78850 * 180.02562 * 11 10 9 33 33 H 1.08004 * 119.82358 * 180.30215 * 12 11 10 34 34 H 1.09008 * 109.47106 * 20.44415 * 17 16 14 35 35 H 1.08992 * 109.47740 * 140.44099 * 17 16 14 36 36 H 1.07994 * 122.54085 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.20355 * 180.20026 * 20 19 18 38 38 H 1.07998 * 125.20259 * 0.02562 * 22 18 17 39 39 H 1.08001 * 120.81892 * 359.96400 * 24 23 16 40 40 H 1.08004 * 120.38197 * 179.97438 * 25 24 23 41 41 H 1.08008 * 119.53614 * 179.74367 * 26 25 24 42 42 H 1.07997 * 119.67002 * 179.70658 * 28 27 26 43 43 H 1.07998 * 120.20507 * 180.25451 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0801 -1.2165 0.1305 9 6 1.3110 -2.4309 -0.1693 10 6 1.7798 -3.6061 0.4481 11 6 1.0994 -4.7916 0.2805 12 6 -0.0500 -4.8368 -0.4885 13 6 -0.5278 -3.6806 -1.1145 14 6 -1.7532 -3.7385 -1.9396 15 8 -2.0243 -2.8218 -2.6905 16 7 -2.5698 -4.8077 -1.8594 17 6 -2.3137 -5.8520 -0.8643 18 6 -1.6115 -7.0117 -1.5225 19 6 -2.1426 -7.6833 -2.6102 20 6 -1.3912 -8.6826 -3.0753 21 16 0.0692 -8.8234 -2.1051 22 6 -0.4340 -7.4723 -1.0977 23 6 -3.6619 -4.9204 -2.7260 24 6 -3.4884 -4.7908 -4.1021 25 6 -4.6001 -4.9108 -4.9195 26 6 -5.8364 -5.1480 -4.3476 27 7 -5.9665 -5.2708 -3.0412 28 6 -4.9349 -5.1636 -2.2274 29 6 0.1475 -2.4756 -0.9553 30 1 -0.4850 0.8401 0.0004 31 1 2.6742 -3.5781 1.0529 32 1 1.4625 -5.6906 0.7563 33 1 -0.5788 -5.7707 -0.6096 34 1 -1.6849 -5.4503 -0.0696 35 1 -3.2594 -6.1919 -0.4425 36 1 -3.0915 -7.4162 -3.0512 37 1 -1.6432 -9.3120 -3.9160 38 1 0.1248 -7.0764 -0.2626 39 1 -2.5113 -4.6012 -4.5212 40 1 -4.5031 -4.8156 -5.9910 41 1 -6.7072 -5.2383 -4.9802 42 1 -5.0814 -5.2655 -1.1623 43 1 -0.2200 -1.5796 -1.4333 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193508820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:12 Heat of formation + Delta-G solvation = 126.187733 kcal Electronic energy + Delta-G solvation = -29876.428599 eV Core-core repulsion = 25980.881572 eV Total energy + Delta-G solvation = -3895.547027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12528 -39.48128 -38.17339 -37.17856 -35.21818 -33.86389 -32.37029 -31.58249 -30.22036 -29.56010 -29.14394 -26.79253 -25.55320 -24.05190 -23.61977 -23.04930 -21.62594 -21.03734 -19.53497 -18.93203 -17.90142 -17.63134 -17.17834 -16.47810 -16.37966 -15.95409 -15.47027 -15.10869 -15.04116 -14.27062 -14.10841 -13.98629 -13.73285 -13.35228 -13.16075 -13.01857 -12.91200 -12.88514 -12.64399 -12.52918 -12.20898 -12.09313 -11.89555 -11.53998 -11.22622 -11.09998 -10.91595 -10.58120 -10.24686 -10.20234 -10.05918 -9.70544 -9.64954 -9.48092 -9.30442 -9.03483 -8.72935 -8.43770 -8.17642 -7.72610 -7.51170 -6.79735 -4.50906 0.96680 1.06646 1.30637 1.64733 1.94822 2.07334 2.54530 2.71347 3.05262 3.06093 3.09959 3.22507 3.60415 3.85101 3.89446 4.47387 4.55862 4.80706 4.85393 4.93929 4.98117 5.07286 5.10783 5.28338 5.34970 5.40685 5.46609 5.56730 5.62935 5.70642 5.93701 5.97380 6.12323 6.14733 6.18841 6.34948 6.36273 6.44701 6.57735 6.83536 6.90822 7.01078 7.14432 7.26477 7.43779 7.58511 7.72084 7.89356 7.94557 8.08331 8.42300 8.63217 8.74004 8.76865 10.15094 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.003645 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.376196 B = 7680.118856 C = 9972.141245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.462 4.462 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.199 4.199 11 C -0.105 4.105 12 C -0.274 4.274 13 C -0.128 4.128 14 C 0.570 3.430 15 O -0.526 6.526 16 N -0.560 5.560 17 C 0.128 3.872 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.219 4.219 21 S 0.094 5.906 22 C -0.188 4.188 23 C 0.119 3.881 24 C -0.072 4.072 25 C -0.156 4.156 26 C 0.076 3.924 27 N -0.470 5.470 28 C 0.081 3.919 29 C -0.080 4.080 30 H 0.283 0.717 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.184 0.816 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -14.520 -4.336 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.219 4.219 11 C -0.123 4.123 12 C -0.293 4.293 13 C -0.132 4.132 14 C 0.364 3.636 15 O -0.402 6.402 16 N -0.288 5.288 17 C 0.005 3.995 18 C -0.142 4.142 19 C -0.146 4.146 20 C -0.354 4.354 21 S 0.357 5.643 22 C -0.324 4.324 23 C 0.024 3.976 24 C -0.100 4.100 25 C -0.177 4.177 26 C -0.081 4.081 27 N -0.179 5.179 28 C -0.079 4.079 29 C -0.100 4.100 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.102 0.898 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.173 0.827 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.459 -14.956 -4.395 16.517 hybrid contribution 0.032 1.924 -0.416 1.969 sum -5.427 -13.032 -4.811 14.914 Atomic orbital electron populations 1.69741 1.07412 1.29457 1.35727 1.25921 0.94899 1.01425 0.92374 0.86168 0.80636 0.80755 0.78644 1.18435 1.19692 1.19879 1.19605 0.95461 0.90072 1.44040 0.90117 1.17606 0.91408 0.92559 0.88705 1.21237 1.02415 0.93816 1.04396 1.20463 0.95699 0.96627 0.99530 1.22578 1.01057 0.99276 1.06348 1.19325 0.95332 0.96188 1.02309 1.19128 0.82829 0.79731 0.81922 1.90734 1.73619 1.36131 1.39703 1.45456 1.26079 1.22103 1.35155 1.21550 1.01494 0.84903 0.91577 1.19192 0.96259 0.99742 0.99021 1.19976 1.01400 0.96055 0.97195 1.25518 0.98774 1.04971 1.06113 1.84251 1.22392 1.32028 1.25579 1.26019 0.99957 1.00376 1.06080 1.18729 0.88517 1.00083 0.90237 1.21642 1.00041 0.96122 0.92149 1.22036 0.93248 1.01223 1.01146 1.22661 0.96907 0.97275 0.91268 1.67646 1.32658 1.12603 1.04971 1.22741 0.86571 0.98535 1.00009 1.21685 0.95919 0.95431 0.96947 0.90628 0.88518 0.88885 0.82464 0.83295 0.89821 0.84931 0.82157 0.79944 0.84820 0.84706 0.82836 0.82730 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.77 10.89 55.55 0.60 -20.16 16 2 C 0.07 1.77 5.28 -17.34 -0.09 1.67 16 3 Si 0.91 18.63 29.57 -169.99 -5.03 13.60 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.83 9.05 -37.73 -0.34 -12.18 16 8 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 9 C 0.10 2.53 5.53 -106.87 -0.59 1.94 16 10 C -0.20 -4.43 9.78 -38.81 -0.38 -4.81 16 11 C -0.10 -2.02 9.57 -39.73 -0.38 -2.40 16 12 C -0.27 -5.20 6.63 -38.92 -0.26 -5.46 16 13 C -0.13 -2.87 5.71 -105.04 -0.60 -3.47 16 14 C 0.57 12.12 7.34 -12.33 -0.09 12.03 16 15 O -0.53 -12.81 15.52 5.31 0.08 -12.73 16 16 N -0.56 -9.36 2.61 -120.65 -0.31 -9.67 16 17 C 0.13 1.77 5.25 -5.19 -0.03 1.74 16 18 C -0.13 -1.68 5.10 -106.25 -0.54 -2.23 16 19 C -0.12 -1.43 9.41 -41.21 -0.39 -1.82 16 20 C -0.22 -2.41 11.23 29.04 0.33 -2.09 16 21 S 0.09 1.04 23.34 -107.50 -2.51 -1.47 16 22 C -0.19 -2.37 9.33 29.04 0.27 -2.10 16 23 C 0.12 1.84 3.68 -83.56 -0.31 1.53 16 24 C -0.07 -1.06 8.86 -39.09 -0.35 -1.41 16 25 C -0.16 -1.87 10.10 -39.47 -0.40 -2.27 16 26 C 0.08 0.90 11.18 -17.53 -0.20 0.70 16 27 N -0.47 -6.50 10.35 -13.08 -0.14 -6.64 16 28 C 0.08 1.14 10.54 -17.32 -0.18 0.96 16 29 C -0.08 -2.04 8.18 -38.44 -0.31 -2.36 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 32 H 0.09 1.46 7.64 -52.49 -0.40 1.06 16 33 H 0.16 2.46 0.27 -62.03 -0.02 2.44 16 34 H 0.15 2.20 4.22 -52.56 -0.22 1.98 16 35 H 0.08 0.94 7.10 -51.93 -0.37 0.57 16 36 H 0.13 1.64 6.85 -52.49 -0.36 1.28 16 37 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.18 2.23 5.46 -52.49 -0.29 1.95 16 39 H 0.13 2.13 7.85 -52.49 -0.41 1.72 16 40 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.15 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.16 1.90 7.44 -52.49 -0.39 1.51 16 43 H 0.13 3.75 5.99 -52.49 -0.31 3.43 16 LS Contribution 366.59 15.07 5.52 5.52 Total: -1.00 -29.72 366.59 -10.62 -40.34 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.01 Total: 13.21 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -4.84 Total: -22.01 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.15 Total: -36.47 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.72 -10.62 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193508820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.532 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds