Wall clock time and date at job start Tue Mar 31 2020 06:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35971 * 116.99823 * 2 1 4 4 C 1.38722 * 119.98402 * 179.97438 * 3 2 1 5 5 C 1.38087 * 120.01674 * 179.97438 * 4 3 2 6 6 C 1.38858 * 119.98429 * 0.02562 * 5 4 3 7 7 N 1.40031 * 120.01713 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99859 * 143.73485 * 7 6 5 9 9 O 1.21664 * 120.00069 * 4.01902 * 8 7 6 10 10 C 1.47091 * 119.99581 * 184.01524 * 8 7 6 11 11 C 1.43193 * 120.00360 * 353.08471 * 10 8 7 12 12 N 9.02712 * 122.19283 * 4.79598 * 2 1 3 13 13 C 1.37862 * 119.99661 * 173.07871 * 10 8 7 14 14 C 1.46380 * 120.00140 * 347.17297 * 13 10 8 15 15 C 1.40301 * 120.12053 * 313.97077 * 14 13 10 16 16 C 1.36539 * 119.87359 * 179.71815 * 15 14 13 17 17 C 1.39273 * 120.12291 * 0.58217 * 16 15 14 18 18 O 1.35501 * 119.87445 * 179.69590 * 17 16 15 19 19 C 1.34743 * 117.00107 * 185.79689 * 18 17 16 20 20 H 1.08005 * 120.00066 * 354.88759 * 19 18 17 21 21 C 1.38773 * 120.00293 * 174.88070 * 19 18 17 22 22 N 1.31472 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47382 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47210 * 120.00297 * 23 21 19 26 26 H 1.48500 * 109.47222 * 240.00555 * 23 21 19 27 27 C 1.39273 * 120.24883 * 359.67125 * 17 16 15 28 28 C 1.36535 * 120.12216 * 0.04712 * 27 17 16 29 29 C 1.38865 * 119.96715 * 0.25224 * 6 5 4 30 30 C 1.38089 * 119.98050 * 359.51607 * 29 6 5 31 31 H 1.08999 * 109.46774 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47399 * 299.99838 * 1 2 3 33 33 H 1.08999 * 109.47177 * 60.00316 * 1 2 3 34 34 H 1.08000 * 119.98832 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00265 * 179.97438 * 5 4 3 36 36 H 0.97000 * 119.99895 * 323.73594 * 7 6 5 37 37 H 1.08001 * 120.00063 * 167.44030 * 13 10 8 38 38 H 1.08002 * 120.05987 * 359.97438 * 15 14 13 39 39 H 1.08002 * 119.93627 * 180.29584 * 16 15 14 40 40 H 0.96994 * 119.99740 * 179.97438 * 22 21 19 41 41 H 1.08000 * 119.93874 * 180.02562 * 27 17 16 42 42 H 1.07997 * 120.06458 * 179.97438 * 28 27 17 43 43 H 1.08001 * 120.00870 * 179.72490 * 29 6 5 44 44 H 1.08002 * 119.98777 * 180.23058 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0592 2.5138 0.0000 6 6 3.3032 3.6786 -0.0005 7 7 3.9389 4.9263 -0.0005 8 6 3.4065 5.9538 -0.6914 9 8 2.3367 5.8187 -1.2547 10 6 4.1190 7.2386 -0.7642 11 6 5.3008 7.4472 0.0170 12 7 6.2384 7.6125 0.6387 13 6 3.6490 8.2419 -1.5846 14 6 2.6221 7.9480 -2.5855 15 6 2.7409 6.8150 -3.4045 16 6 1.7772 6.5426 -4.3325 17 6 0.6839 7.3935 -4.4753 18 8 -0.2665 7.1217 -5.4021 19 6 -1.2343 8.0432 -5.5744 20 1 -1.2760 8.9094 -4.9306 21 6 -2.1775 7.8795 -6.5791 22 7 -2.1270 6.8249 -7.3626 23 14 -3.5196 9.1567 -6.8174 24 1 -3.3570 10.2389 -5.8136 25 1 -3.4202 9.7303 -8.1836 26 1 -4.8484 8.5165 -6.6448 27 6 0.5634 8.5225 -3.6687 28 6 1.5183 8.8014 -2.7335 29 6 1.9165 3.6055 0.0048 30 6 1.2904 2.3747 0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 4.0194 0.3778 0.0014 35 1 5.1377 2.5698 0.0008 36 1 4.7624 5.0510 0.4967 37 1 4.0415 9.2437 -1.4918 38 1 3.5910 6.1574 -3.2982 39 1 1.8652 5.6682 -4.9602 40 1 -2.7865 6.7103 -8.0646 41 1 -0.2867 9.1787 -3.7833 42 1 1.4242 9.6773 -2.1088 43 1 1.3279 4.5110 0.0088 44 1 0.2118 2.3178 0.0008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195381123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:59 Heat of formation + Delta-G solvation = 18.681331 kcal Electronic energy + Delta-G solvation = -30736.455286 eV Core-core repulsion = 26393.493560 eV Total energy + Delta-G solvation = -4342.961726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74551 -39.78505 -39.09425 -37.65501 -36.68650 -36.60807 -34.33055 -33.32183 -32.40434 -31.16336 -30.47402 -29.61051 -28.45450 -27.16688 -25.76028 -24.16398 -23.06420 -22.28882 -22.02398 -21.14526 -20.28642 -18.80504 -18.27021 -18.18786 -17.49719 -17.08188 -16.18539 -15.83162 -15.46839 -15.28200 -14.80653 -14.70761 -14.65890 -14.49106 -13.99501 -13.86403 -13.81324 -13.60578 -13.57156 -13.28427 -13.07637 -12.90368 -12.77513 -12.73623 -12.68717 -12.46944 -12.08000 -11.89211 -11.58680 -11.43310 -11.18087 -11.06877 -10.97856 -10.77845 -10.55533 -9.98430 -9.71935 -9.56963 -9.36532 -9.06404 -8.91606 -8.28107 -7.77522 -7.11472 -6.68138 -4.20548 0.46706 1.23373 1.34092 2.27178 2.32844 2.53602 2.68346 3.00689 3.02235 3.03087 3.08826 3.20210 3.54446 3.77347 3.80150 3.91660 4.47195 4.66944 4.78658 4.80280 4.93274 4.97493 5.03365 5.08580 5.15729 5.17553 5.31917 5.34246 5.45618 5.51131 5.57576 5.77156 5.83529 5.85216 5.96095 6.09803 6.28538 6.32900 6.34874 6.38646 6.53121 6.77575 6.81364 6.90210 7.15373 7.20024 7.28486 7.28999 7.34581 7.40804 7.68651 7.78498 8.19592 8.76615 9.45506 10.48318 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.002839 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.950512 B = 9860.364227 C =13026.525766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.109 3.891 4 C -0.135 4.135 5 C -0.107 4.107 6 C 0.115 3.885 7 N -0.676 5.676 8 C 0.570 3.430 9 O -0.485 6.485 10 C -0.201 4.201 11 C 0.261 3.739 12 N -0.439 5.439 13 C 0.129 3.871 14 C -0.214 4.214 15 C 0.014 3.986 16 C -0.199 4.199 17 C 0.179 3.821 18 O -0.159 6.159 19 C -0.390 4.390 20 H 0.099 0.901 21 C 0.041 3.959 22 N -0.848 5.848 23 Si 0.945 3.055 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.249 4.249 28 C -0.020 4.020 29 C -0.074 4.074 30 C -0.187 4.187 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.404 0.596 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.274 0.726 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 -5.486 13.478 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.234 6.234 3 C 0.064 3.936 4 C -0.154 4.154 5 C -0.128 4.128 6 C 0.021 3.979 7 N -0.322 5.322 8 C 0.358 3.642 9 O -0.358 6.358 10 C -0.209 4.209 11 C -0.052 4.052 12 N -0.116 5.116 13 C 0.105 3.895 14 C -0.215 4.215 15 C -0.005 4.005 16 C -0.218 4.218 17 C 0.122 3.878 18 O -0.059 6.059 19 C -0.465 4.465 20 H 0.116 0.884 21 C -0.165 4.165 22 N -0.480 5.480 23 Si 0.769 3.231 24 H -0.188 1.188 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.268 4.268 28 C -0.039 4.039 29 C -0.094 4.094 30 C -0.206 4.206 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.084 0.916 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.162 0.838 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.140 -5.795 13.616 16.889 hybrid contribution -0.834 0.742 -0.046 1.117 sum 7.306 -5.052 13.570 16.219 Atomic orbital electron populations 1.23058 0.78359 1.03802 1.01640 1.86048 1.21405 1.26944 1.89010 1.19016 0.92321 0.84197 0.98075 1.20132 0.91302 0.97896 1.06091 1.20695 0.99611 0.90474 1.01995 1.17580 0.91836 0.84424 1.04034 1.43428 1.28145 1.09097 1.51531 1.17724 0.85520 0.82594 0.78337 1.90998 1.20073 1.81070 1.43706 1.17781 0.97415 0.98530 1.07153 1.25716 0.92703 0.94024 0.92739 1.81309 1.11976 1.07398 1.10939 1.23002 0.86594 0.95839 0.84062 1.18109 0.99416 1.01194 1.02801 1.20322 0.96381 0.92040 0.91707 1.19797 0.94962 1.02315 1.04746 1.19667 0.87844 0.92136 0.88199 1.83870 1.31146 1.43026 1.47820 1.21573 1.05126 1.02879 1.16952 0.88353 1.25425 0.98460 0.97924 0.94731 1.70009 1.34543 1.26323 1.17159 0.85582 0.79344 0.79275 0.78916 1.18801 1.19892 1.19904 1.20747 1.03052 1.01448 1.01596 1.20551 0.92502 0.96016 0.94833 1.21121 0.93069 0.98337 0.96864 1.21189 1.00284 0.91770 1.07382 0.88376 0.92696 0.92328 0.85010 0.85201 0.76053 0.84765 0.87513 0.86442 0.91571 0.85287 0.87043 0.83821 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.67 10.50 -19.65 -0.21 -3.88 16 3 C 0.11 1.33 6.69 -39.22 -0.26 1.06 16 4 C -0.14 -1.49 9.98 -39.46 -0.39 -1.88 16 5 C -0.11 -1.15 9.96 -39.41 -0.39 -1.54 16 6 C 0.11 1.43 6.27 -83.65 -0.52 0.90 16 7 N -0.68 -7.88 5.29 -10.89 -0.06 -7.94 16 8 C 0.57 7.69 6.73 -12.67 -0.09 7.61 16 9 O -0.48 -8.08 10.19 5.22 0.05 -8.03 16 10 C -0.20 -2.39 5.72 -104.52 -0.60 -2.99 16 11 C 0.26 3.07 14.21 -22.44 -0.32 2.75 16 12 N -0.44 -5.80 18.54 41.88 0.78 -5.02 16 13 C 0.13 1.51 9.50 -36.45 -0.35 1.17 16 14 C -0.21 -3.30 4.43 -105.07 -0.47 -3.77 16 15 C 0.01 0.25 6.78 -39.42 -0.27 -0.02 16 16 C -0.20 -4.04 9.93 -39.81 -0.40 -4.43 16 17 C 0.18 4.05 6.66 -38.81 -0.26 3.79 16 18 O -0.16 -4.26 9.74 1.06 0.01 -4.25 16 19 C -0.39 -10.17 9.48 30.93 0.29 -9.88 16 20 H 0.10 2.35 5.18 -52.48 -0.27 2.07 16 21 C 0.04 1.06 5.50 -17.51 -0.10 0.97 16 22 N -0.85 -23.45 13.67 55.49 0.76 -22.69 16 23 Si 0.94 19.14 29.55 -169.99 -5.02 14.12 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.25 -4.95 9.10 -39.81 -0.36 -5.31 16 28 C -0.02 -0.33 9.75 -39.42 -0.38 -0.72 16 29 C -0.07 -1.00 8.68 -39.40 -0.34 -1.34 16 30 C -0.19 -2.32 9.03 -39.46 -0.36 -2.68 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.40 3.92 7.72 -40.82 -0.32 3.60 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.11 1.67 7.37 -52.49 -0.39 1.28 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.13 2.55 5.62 -52.49 -0.29 2.25 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.14 2.13 6.35 -52.49 -0.33 1.80 16 44 H 0.13 1.42 6.29 -52.49 -0.33 1.09 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -30.89 387.60 -6.81 -37.70 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.40 Total: 9.25 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -4.57 Total: -15.11 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 1.48 Total: -35.65 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.14 Total: -16.16 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.89 -6.81 -37.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195381123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.384 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds