Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86801 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47280 * 274.98977 * 3 2 1 5 5 H 1.48502 * 109.47119 * 34.98721 * 3 2 1 6 6 H 1.48498 * 109.47208 * 154.98479 * 3 2 1 7 7 C 1.40047 * 120.00579 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00567 * 186.15243 * 7 2 1 9 9 C 1.46376 * 119.99740 * 6.14197 * 7 2 1 10 10 O 1.21688 * 119.99916 * 353.94564 * 9 7 2 11 11 N 1.34771 * 120.00058 * 173.93970 * 9 7 2 12 12 C 1.46504 * 120.00079 * 180.02562 * 11 9 7 13 13 H 1.08998 * 110.35227 * 32.86274 * 12 11 9 14 14 C 1.54591 * 110.30833 * 270.71689 * 12 11 9 15 15 C 1.54943 * 102.92432 * 263.04191 * 14 12 11 16 16 N 1.48807 * 103.34736 * 322.69208 * 15 14 12 17 17 C 1.39067 * 111.18778 * 159.50503 * 16 15 14 18 18 N 1.32389 * 119.71327 * 242.39690 * 17 16 15 19 19 C 1.31964 * 121.63740 * 179.71254 * 18 17 16 20 20 C 1.38055 * 120.87537 * 0.55521 * 19 18 17 21 21 C 1.50696 * 120.33294 * 179.70814 * 20 19 18 22 22 F 1.39908 * 109.47034 * 270.02273 * 21 20 19 23 23 F 1.39899 * 109.47341 * 30.02257 * 21 20 19 24 24 F 1.39898 * 109.47208 * 150.02365 * 21 20 19 25 25 C 1.38847 * 119.33625 * 359.73074 * 20 19 18 26 26 C 1.38424 * 118.49529 * 359.97438 * 25 20 19 27 27 Cl 1.73598 * 120.46338 * 179.97438 * 26 25 20 28 28 C 1.47898 * 105.67825 * 38.97477 * 16 15 14 29 29 H 0.96999 * 120.00048 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00027 * 0.02562 * 11 9 7 31 31 H 1.09004 * 110.72722 * 21.40345 * 14 12 11 32 32 H 1.08997 * 110.72543 * 144.68465 * 14 12 11 33 33 H 1.09001 * 110.66449 * 81.02195 * 15 14 12 34 34 H 1.09006 * 110.66396 * 203.98828 * 15 14 12 35 35 H 1.07994 * 119.56586 * 180.30557 * 19 18 17 36 36 H 1.08003 * 120.75704 * 180.02562 * 25 20 19 37 37 H 1.09009 * 109.91936 * 215.45503 * 28 16 15 38 38 H 1.09001 * 109.92082 * 94.36010 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4947 2.6200 0.8028 6 1 3.5869 1.4122 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0997 9 6 1.2815 -2.4768 -0.1367 10 8 0.0647 -2.4827 -0.1387 11 7 1.9612 -3.6340 -0.2601 12 6 1.2351 -4.8990 -0.3970 13 1 0.3024 -4.7440 -0.9393 14 6 0.9514 -5.5082 0.9952 15 6 2.1054 -6.5274 1.1691 16 7 2.2814 -7.0841 -0.1996 17 6 3.5383 -7.6596 -0.3505 18 7 4.3840 -7.1648 -1.2408 19 6 5.5879 -7.6776 -1.4115 20 6 6.0071 -8.7637 -0.6696 21 6 7.3821 -9.3436 -0.8792 22 9 7.3245 -10.3367 -1.8630 23 9 8.2574 -8.3319 -1.2885 24 9 7.8410 -9.9006 0.3193 25 6 5.1488 -9.3168 0.2713 26 6 3.8945 -8.7540 0.4326 27 17 2.7804 -9.4050 1.5938 28 6 2.1079 -5.9406 -1.1214 29 1 -0.4850 0.8400 0.0004 30 1 2.9313 -3.6293 -0.2583 31 1 0.9947 -4.7409 1.7682 32 1 -0.0143 -6.0135 1.0057 33 1 3.0156 -6.0256 1.4975 34 1 1.8240 -7.3107 1.8731 35 1 6.2526 -7.2444 -2.1441 36 1 5.4532 -10.1664 0.8646 37 1 1.6113 -6.2711 -2.0338 38 1 3.0787 -5.5079 -1.3633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -135.088060 kcal Electronic energy + Delta-G solvation = -29849.920091 eV Core-core repulsion = 24917.886402 eV Total energy + Delta-G solvation = -4932.033689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.070 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.54623 -48.06550 -48.00228 -41.31010 -38.95231 -37.05641 -36.85128 -34.02909 -33.04147 -32.42065 -31.47237 -29.72768 -28.46250 -26.31833 -25.77524 -24.29526 -23.08042 -21.52193 -20.94211 -19.42922 -19.03284 -18.87509 -18.82185 -17.67329 -17.29741 -17.11611 -15.77420 -15.76585 -15.29977 -15.23708 -14.87527 -14.79602 -14.66805 -14.45536 -14.23488 -14.15624 -14.07208 -14.02624 -13.77422 -13.49568 -12.78097 -12.72021 -12.45162 -12.42023 -12.24793 -12.14874 -11.68101 -11.34527 -11.12795 -10.98215 -10.74758 -10.68826 -10.56609 -10.48099 -10.23725 -10.11966 -9.79824 -8.89076 -8.61411 -7.67639 -7.59974 -6.23830 -4.68328 0.17434 0.47787 1.58908 2.23005 2.80996 3.11380 3.16541 3.19125 3.22145 3.36163 3.59731 3.87220 3.99885 4.07418 4.15688 4.32145 4.51709 4.64363 4.69860 4.78804 4.94874 5.02687 5.17815 5.28864 5.48806 5.51280 5.63289 5.74281 5.85766 5.99979 6.14841 6.31364 6.45995 6.55879 6.72397 7.28518 7.39775 7.85059 8.03219 8.27974 8.98613 9.45526 10.54681 10.72882 Molecular weight = 363.07amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.002483 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.704274 B =11272.999572 C =12768.720771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.759 5.759 12 C 0.146 3.854 13 H 0.093 0.907 14 C -0.132 4.132 15 C 0.040 3.960 16 N -0.455 5.455 17 C 0.358 3.642 18 N -0.498 5.498 19 C 0.191 3.809 20 C -0.269 4.269 21 C 0.523 3.477 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.176 7.176 25 C 0.004 3.996 26 C -0.110 4.110 27 Cl -0.030 7.030 28 C 0.028 3.972 29 H 0.268 0.732 30 H 0.379 0.621 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.189 -20.524 0.469 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.414 5.414 12 C 0.039 3.961 13 H 0.111 0.889 14 C -0.171 4.171 15 C -0.084 4.084 16 N -0.170 5.170 17 C 0.124 3.876 18 N -0.212 5.212 19 C 0.032 3.968 20 C -0.275 4.275 21 C 0.468 3.532 22 F -0.156 7.156 23 F -0.154 7.154 24 F -0.157 7.157 25 C -0.022 4.022 26 C -0.142 4.142 27 Cl -0.001 7.001 28 C -0.098 4.098 29 H 0.079 0.921 30 H 0.211 0.789 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.193 0.807 36 H 0.175 0.825 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.273 -20.123 -0.015 23.066 hybrid contribution 1.879 0.271 0.572 1.983 sum 13.152 -19.852 0.558 23.820 Atomic orbital electron populations 1.70017 1.07061 1.27318 1.35130 1.25691 0.94590 1.00286 0.92585 0.86375 0.80234 0.81530 0.78717 1.19774 1.20457 1.18917 1.20877 0.94073 0.89595 1.53750 0.91474 1.18217 0.87164 0.82284 0.76324 1.90605 1.14005 1.86353 1.55160 1.46310 1.08315 1.05299 1.81493 1.21289 0.96218 0.84549 0.94079 0.88886 1.23029 0.97028 0.97369 0.99723 1.23614 0.99989 0.97909 0.86922 1.61842 1.18417 1.28853 1.07935 1.20183 0.88517 0.90445 0.88435 1.68049 1.03023 1.29446 1.20654 1.22593 0.91655 0.88875 0.93698 1.20786 0.95756 1.04509 1.06436 1.17876 0.85295 0.75930 0.74120 1.93249 1.96636 1.62795 1.62886 1.93216 1.71658 1.60042 1.90495 1.93204 1.90314 1.86012 1.46184 1.21109 0.90180 0.97361 0.93563 1.21232 0.93762 0.99425 0.99766 1.98385 1.60786 1.84594 1.56327 1.23350 1.02262 0.88852 0.95360 0.92080 0.78923 0.89378 0.90389 0.92338 0.88516 0.80737 0.82487 0.89163 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.54 11.85 55.55 0.66 -21.88 16 2 C 0.09 2.42 5.49 -17.37 -0.10 2.32 16 3 Si 0.91 19.80 29.56 -169.99 -5.03 14.77 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.55 -14.99 9.53 -35.63 -0.34 -15.33 16 8 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 9 C 0.56 15.11 7.74 -12.99 -0.10 15.01 16 10 O -0.58 -17.98 14.70 5.20 0.08 -17.90 16 11 N -0.76 -15.93 5.05 -53.90 -0.27 -16.21 16 12 C 0.15 2.61 3.34 -66.57 -0.22 2.39 16 13 H 0.09 1.89 7.56 -51.93 -0.39 1.50 16 14 C -0.13 -2.08 6.79 -24.87 -0.17 -2.25 16 15 C 0.04 0.52 5.67 -1.74 -0.01 0.51 16 16 N -0.45 -6.01 5.02 -168.96 -0.85 -6.85 16 17 C 0.36 4.38 6.22 -154.94 -0.96 3.42 16 18 N -0.50 -5.97 8.15 -12.40 -0.10 -6.07 16 19 C 0.19 1.82 10.55 -17.56 -0.19 1.64 16 20 C -0.27 -2.37 5.46 -104.47 -0.57 -2.94 16 21 C 0.52 4.33 3.38 36.00 0.12 4.45 16 22 F -0.17 -1.53 17.30 2.25 0.04 -1.49 16 23 F -0.17 -1.48 16.48 2.25 0.04 -1.44 16 24 F -0.18 -1.49 16.53 2.25 0.04 -1.45 16 25 C 0.00 0.04 9.32 -39.29 -0.37 -0.33 16 26 C -0.11 -1.15 6.17 -39.15 -0.24 -1.39 16 27 Cl -0.03 -0.29 25.84 -51.86 -1.34 -1.63 16 28 C 0.03 0.41 6.12 -2.76 -0.02 0.40 16 29 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 30 H 0.38 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 1.57 8.05 -51.93 -0.42 1.16 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 34 H 0.10 1.13 5.90 -51.93 -0.31 0.82 16 35 H 0.18 1.24 7.60 -52.49 -0.40 0.85 16 36 H 0.16 1.03 7.68 -52.48 -0.40 0.62 16 37 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.09 1.36 5.99 -51.93 -0.31 1.05 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.30 349.10 -8.01 -40.32 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.38 Total: 6.68 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -3.16 Total: 7.89 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.56 Total: -51.01 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.08 Total: -17.90 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.11 Total: -4.37 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.34 Total: -1.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.30 -8.01 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.771 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds