Wall clock time and date at job start Tue Mar 31 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 119.99925 * 2 1 4 4 H 1.48494 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47029 * 300.00462 * 3 2 1 6 6 H 1.48500 * 109.46607 * 60.00094 * 3 2 1 7 7 C 1.37879 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99961 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99830 * 274.99940 * 10 9 7 12 12 C 1.53008 * 109.47172 * 275.00143 * 11 10 9 13 13 F 1.39897 * 109.47086 * 60.00246 * 12 11 10 14 14 F 1.39896 * 109.47088 * 180.02562 * 12 11 10 15 15 F 1.39893 * 109.46725 * 299.99946 * 12 11 10 16 16 S 1.65594 * 120.00004 * 95.00172 * 10 9 7 17 17 O 1.42094 * 106.40201 * 156.46185 * 16 10 9 18 18 O 1.42098 * 106.40620 * 23.53634 * 16 10 9 19 19 C 1.76207 * 107.21762 * 269.99601 * 16 10 9 20 20 C 1.33998 * 124.91831 * 90.00181 * 19 16 10 21 21 C 1.46785 * 106.18190 * 180.02562 * 20 19 16 22 22 C 1.39405 * 134.36624 * 179.97438 * 21 20 19 23 23 C 1.36748 * 119.71388 * 179.97438 * 22 21 20 24 24 C 1.38738 * 120.41266 * 0.04525 * 23 22 21 25 25 C 1.37848 * 120.69043 * 359.97438 * 24 23 22 26 26 C 1.38937 * 119.81556 * 0.02562 * 25 24 23 27 27 O 1.34443 * 124.92390 * 270.03053 * 19 16 10 28 28 H 0.96996 * 120.00353 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47073 * 59.99838 * 9 7 2 30 30 H 1.09004 * 109.47019 * 300.00142 * 9 7 2 31 31 H 1.09004 * 109.47536 * 35.00019 * 11 10 9 32 32 H 1.08999 * 109.47633 * 155.00029 * 11 10 9 33 33 H 1.08001 * 126.91274 * 0.02562 * 20 19 16 34 34 H 1.07996 * 120.14611 * 359.97438 * 22 21 20 35 35 H 1.07993 * 119.79240 * 180.02562 * 23 22 21 36 36 H 1.08003 * 119.65346 * 180.02562 * 24 23 22 37 37 H 1.08000 * 120.09001 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7632 -4.0975 -1.2644 12 6 1.8034 -5.1103 -1.8923 13 9 0.5700 -4.4961 -2.1341 14 9 2.3385 -5.5737 -3.0990 15 9 1.6247 -6.1874 -1.0178 16 16 2.6462 -4.3232 1.4281 17 8 3.0861 -5.6350 1.1043 18 8 1.5967 -4.0606 2.3494 19 6 4.0602 -3.4574 2.0248 20 6 4.0210 -2.3885 2.8318 21 6 5.4174 -2.0021 3.0671 22 6 6.0392 -0.9936 3.8016 23 6 7.4039 -0.9067 3.8135 24 6 8.1716 -1.8148 3.0988 25 6 7.5744 -2.8184 2.3665 26 6 6.1893 -2.9244 2.3411 27 8 5.3346 -3.7733 1.7358 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 2.9025 -3.2582 -1.9459 32 1 3.7242 -4.5760 -1.0763 33 1 3.1393 -1.9078 3.2292 34 1 5.4458 -0.2839 4.3590 35 1 7.8869 -0.1262 4.3824 36 1 9.2486 -1.7350 3.1171 37 1 8.1814 -3.5198 1.8134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195580454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:50 Heat of formation + Delta-G solvation = -187.281972 kcal Electronic energy + Delta-G solvation = -31638.884772 eV Core-core repulsion = 26674.338741 eV Total energy + Delta-G solvation = -4964.546032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.058 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.67369 -47.22916 -47.10726 -42.35491 -37.95260 -37.04516 -36.24376 -35.63675 -32.91571 -32.80959 -30.51614 -29.55895 -29.35673 -26.59055 -23.83048 -23.30222 -22.60891 -22.31997 -21.51497 -19.16435 -18.41497 -18.12259 -18.02802 -17.44141 -17.16000 -17.01740 -16.22673 -16.17241 -15.99339 -15.57368 -14.72948 -14.67343 -14.20794 -14.11650 -14.06428 -13.74577 -13.60534 -13.44401 -13.32121 -13.27913 -13.12813 -12.86067 -12.71882 -12.40425 -12.13446 -12.11964 -11.93491 -11.85036 -11.50846 -11.40749 -11.34436 -11.06336 -10.99995 -10.72214 -10.42797 -10.22827 -10.08180 -8.80734 -8.66340 -8.61002 -8.41594 -6.27225 -4.35746 0.38362 0.66375 1.27060 2.02173 2.75304 3.08917 3.14418 3.19575 3.23997 3.27640 3.60344 3.89230 4.18172 4.23885 4.37315 4.48706 4.52827 4.69029 4.72611 4.82441 5.01774 5.06864 5.12476 5.13176 5.29806 5.51765 5.55807 5.72629 5.86088 5.98584 6.10664 6.27490 6.31264 6.45551 6.86834 7.01604 7.16435 7.25790 7.67249 7.91081 8.68925 9.32065 10.80836 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.008507 B = 0.005236 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.695420 B = 5346.812854 C = 7380.034591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.231 3.769 10 N -0.969 5.969 11 C 0.090 3.910 12 C 0.431 3.569 13 F -0.174 7.174 14 F -0.187 7.187 15 F -0.177 7.177 16 S 2.708 3.292 17 O -0.942 6.942 18 O -0.922 6.922 19 C -0.527 4.527 20 C -0.051 4.051 21 C -0.153 4.153 22 C -0.051 4.051 23 C -0.148 4.148 24 C -0.080 4.080 25 C -0.117 4.117 26 C 0.073 3.927 27 O -0.145 6.145 28 H 0.267 0.733 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.180 0.820 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.992 -4.162 2.751 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.083 0.917 9 C 0.110 3.890 10 N -0.807 5.807 11 C -0.040 4.040 12 C 0.374 3.626 13 F -0.155 7.155 14 F -0.169 7.169 15 F -0.159 7.159 16 S 2.790 3.210 17 O -0.932 6.932 18 O -0.912 6.912 19 C -0.652 4.652 20 C -0.072 4.072 21 C -0.154 4.154 22 C -0.069 4.069 23 C -0.166 4.166 24 C -0.099 4.099 25 C -0.136 4.136 26 C 0.023 3.977 27 O -0.045 6.045 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.197 0.803 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.514 -4.935 3.007 12.883 hybrid contribution 0.705 1.707 -0.104 1.850 sum 12.218 -3.228 2.903 12.967 Atomic orbital electron populations 1.69926 1.05981 1.27411 1.48623 1.24902 0.94788 0.99185 0.94504 0.86540 0.80134 0.83481 0.77983 1.19619 1.20676 1.20671 1.21502 0.93623 0.90495 1.53488 0.91750 1.19670 0.86960 0.81087 1.01240 1.57578 1.56338 1.49751 1.17051 1.22287 0.94695 0.97478 0.89540 1.21412 0.82232 0.82374 0.76577 1.93210 1.45512 1.82446 1.94378 1.93147 1.86116 1.89996 1.47629 1.93230 1.95755 1.58038 1.68836 1.02202 0.72458 0.72921 0.73402 1.93596 1.82441 1.33603 1.83532 1.93652 1.49965 1.85369 1.62224 1.36059 1.00114 1.14595 1.14413 1.22788 0.97093 0.92840 0.94470 1.20107 0.92885 0.99383 1.03043 1.20417 0.94656 0.95598 0.96260 1.20787 0.93408 1.00591 1.01796 1.20998 1.00109 0.93454 0.95300 1.19965 0.88828 1.01363 1.03398 1.20048 0.92402 0.90539 0.94742 1.84120 1.12603 1.47643 1.60130 0.92324 0.92307 0.91980 0.84932 0.86548 0.80272 0.85000 0.85139 0.84630 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.83 13.29 55.43 0.74 -23.10 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -13.46 9.38 -34.44 -0.32 -13.78 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.23 5.26 5.25 -5.19 -0.03 5.24 16 10 N -0.97 -18.64 2.67 -115.66 -0.31 -18.94 16 11 C 0.09 1.43 5.42 -4.04 -0.02 1.41 16 12 C 0.43 7.12 3.29 37.16 0.12 7.25 16 13 F -0.17 -3.15 15.70 2.25 0.04 -3.11 16 14 F -0.19 -2.81 17.32 2.25 0.04 -2.77 16 15 F -0.18 -3.17 15.58 2.25 0.04 -3.14 16 16 S 2.71 51.84 5.74 -107.50 -0.62 51.23 16 17 O -0.94 -18.36 15.41 -57.40 -0.88 -19.24 16 18 O -0.92 -19.52 16.34 -57.17 -0.93 -20.46 16 19 C -0.53 -9.64 7.27 29.24 0.21 -9.43 16 20 C -0.05 -0.90 10.79 -37.62 -0.41 -1.31 16 21 C -0.15 -2.47 6.40 -105.16 -0.67 -3.14 16 22 C -0.05 -0.67 10.05 -39.69 -0.40 -1.07 16 23 C -0.15 -1.57 9.98 -39.94 -0.40 -1.97 16 24 C -0.08 -0.82 10.01 -39.54 -0.40 -1.21 16 25 C -0.12 -1.44 10.07 -39.47 -0.40 -1.84 16 26 C 0.07 1.17 7.42 -38.48 -0.29 0.88 16 27 O -0.14 -2.56 10.58 3.91 0.04 -2.52 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.06 1.39 6.73 -51.93 -0.35 1.04 16 30 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 31 H 0.13 1.93 8.11 -51.93 -0.42 1.51 16 32 H 0.12 1.57 7.61 -51.93 -0.40 1.17 16 33 H 0.18 2.98 8.06 -52.49 -0.42 2.56 16 34 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -30.55 350.04 -7.88 -38.43 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.18 Total: 0.81 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.09 Total: -17.26 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.43 Total: -42.04 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.78 Total: -42.22 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 0.11 Total: -9.02 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 51.84 SS G_CDS: -0.62 Total: 51.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.55 -7.88 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195580454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.852 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds