Wall clock time and date at job start Tue Mar 31 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35951 * 116.99737 * 2 1 4 4 C 1.37999 * 120.05656 * 0.21919 * 3 2 1 5 5 C 1.40281 * 119.69420 * 180.20717 * 4 3 2 6 6 C 1.46382 * 120.10072 * 179.81016 * 5 4 3 7 7 C 1.37869 * 120.00119 * 136.42763 * 6 5 4 8 8 C 1.43206 * 119.99859 * 169.01964 * 7 6 5 9 9 N 8.27676 * 82.92367 * 3.68238 * 2 1 3 10 10 C 1.47083 * 119.99995 * 348.75340 * 7 6 5 11 11 O 1.21664 * 120.00006 * 353.04768 * 10 7 6 12 12 N 1.34779 * 119.99771 * 173.04674 * 10 7 6 13 13 C 1.39842 * 119.99506 * 184.56819 * 12 10 7 14 14 C 1.38891 * 120.07422 * 324.56144 * 13 12 10 15 15 C 1.38106 * 119.92913 * 179.75049 * 14 13 12 16 16 C 1.38285 * 120.06844 * 0.53419 * 15 14 13 17 17 C 1.38292 * 120.14968 * 359.74407 * 16 15 14 18 18 C 1.38104 * 120.06572 * 359.97438 * 17 16 15 19 19 C 1.40283 * 119.79832 * 359.53092 * 5 4 3 20 20 C 1.36540 * 120.10373 * 0.27983 * 19 5 4 21 21 C 1.39139 * 120.31198 * 359.95356 * 20 19 5 22 22 O 1.35538 * 119.90020 * 180.02562 * 21 20 19 23 23 C 1.34727 * 117.00170 * 5.86778 * 22 21 20 24 24 H 1.07999 * 119.99929 * 5.31511 * 23 22 21 25 25 C 1.38760 * 120.00238 * 185.31939 * 23 22 21 26 26 N 1.31476 * 119.99946 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00281 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47041 * 59.99943 * 27 25 23 29 29 H 1.48496 * 109.47410 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47208 * 300.00136 * 27 25 23 31 31 H 1.08999 * 109.46989 * 59.99383 * 1 2 3 32 32 H 1.08997 * 109.46792 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46634 * 299.99390 * 1 2 3 34 34 H 1.07996 * 120.14878 * 359.97438 * 4 3 2 35 35 H 1.08004 * 119.99493 * 316.43507 * 6 5 4 36 36 H 0.96996 * 120.00208 * 4.56462 * 12 10 7 37 37 H 1.08008 * 120.03524 * 0.03328 * 14 13 12 38 38 H 1.07999 * 119.96713 * 180.30031 * 15 14 13 39 39 H 1.08004 * 119.92783 * 179.72736 * 16 15 14 40 40 H 1.07991 * 119.96508 * 180.02562 * 17 16 15 41 41 H 1.08005 * 120.02923 * 180.02562 * 18 17 16 42 42 H 1.08006 * 119.95094 * 180.25174 * 19 5 4 43 43 H 1.07999 * 119.84416 * 179.97438 * 20 19 5 44 44 H 0.97003 * 120.00164 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2957 2.3694 0.0046 5 6 1.9404 3.6153 0.0001 6 6 1.1530 4.8493 0.0007 7 6 1.5143 5.8972 0.8206 8 6 0.8982 7.1796 0.6571 9 7 0.4094 8.1968 0.5275 10 6 2.5283 5.6965 1.8669 11 8 2.9559 4.5802 2.0935 12 7 2.9837 6.7492 2.5747 13 6 4.0154 6.5742 3.5024 14 6 4.0939 5.4019 4.2431 15 6 5.1170 5.2300 5.1548 16 6 6.0562 6.2282 5.3385 17 6 5.9776 7.3991 4.6069 18 6 4.9604 7.5747 3.6895 19 6 3.3419 3.6750 0.0011 20 6 4.0764 2.5240 0.0005 21 6 3.4416 1.2859 0.0000 22 8 4.1789 0.1486 -0.0001 23 6 5.5136 0.2849 0.1231 24 1 5.9426 1.2597 0.3021 25 6 6.3371 -0.8272 0.0200 26 7 5.8149 -2.0138 -0.1985 27 14 8.1877 -0.6381 0.1901 28 1 8.5072 -0.0780 1.5279 29 1 8.8367 -1.9654 0.0408 30 1 8.6905 0.2795 -0.8636 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5137 0.8901 34 1 0.2170 2.3167 0.0077 35 1 0.2889 4.9388 -0.6411 36 1 2.5960 7.6281 2.4406 37 1 3.3583 4.6235 4.1029 38 1 5.1814 4.3167 5.7275 39 1 6.8528 6.0933 6.0553 40 1 6.7129 8.1765 4.7525 41 1 4.8998 8.4892 3.1180 42 1 3.8408 4.6330 0.0018 43 1 5.1552 2.5749 0.0008 44 1 6.3905 -2.7913 -0.2702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212796431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:03 Heat of formation + Delta-G solvation = 25.386425 kcal Electronic energy + Delta-G solvation = -31468.213115 eV Core-core repulsion = 27125.542144 eV Total energy + Delta-G solvation = -4342.670971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.66334 -39.67340 -38.56833 -37.69461 -36.74738 -36.38013 -34.63966 -33.21099 -32.41033 -30.89343 -29.97230 -29.64281 -28.66955 -26.69925 -25.68235 -24.32027 -22.94720 -22.48509 -21.72080 -21.09593 -20.40582 -18.75950 -18.22239 -17.73108 -17.48987 -16.50048 -16.13495 -15.41766 -15.38080 -15.25118 -15.11045 -14.76961 -14.61389 -14.28554 -14.05147 -13.87839 -13.66406 -13.61833 -13.52612 -13.42869 -13.26527 -12.92277 -12.78713 -12.68684 -12.38964 -11.84755 -11.81810 -11.60632 -11.54231 -11.27520 -11.18335 -11.01957 -10.75386 -10.67455 -10.52455 -10.33503 -9.71289 -9.57733 -9.29093 -8.92109 -8.85164 -8.19685 -7.90330 -6.85696 -6.67514 -4.13724 0.41677 1.30714 1.42160 2.18027 2.35684 2.54851 2.70186 3.03054 3.04774 3.06832 3.08686 3.57750 3.81071 3.86428 3.91003 3.99013 4.42708 4.70321 4.89293 4.93344 4.94498 4.95066 5.12579 5.16658 5.40124 5.43085 5.51426 5.53773 5.55553 5.59997 5.62327 5.79992 5.82499 5.87896 6.02901 6.21481 6.28188 6.32346 6.36308 6.49237 6.50496 6.59329 6.81047 6.93667 7.05448 7.07936 7.25733 7.34362 7.41455 7.51435 7.74926 8.11213 8.18595 8.75802 9.45220 10.47750 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.007111 B = 0.003647 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3936.699153 B = 7676.525618 C =10624.284796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.305 6.305 3 C 0.038 3.962 4 C -0.118 4.118 5 C -0.192 4.192 6 C 0.127 3.873 7 C -0.205 4.205 8 C 0.262 3.738 9 N -0.440 5.440 10 C 0.569 3.431 11 O -0.481 6.481 12 N -0.678 5.678 13 C 0.151 3.849 14 C -0.116 4.116 15 C -0.100 4.100 16 C -0.139 4.139 17 C -0.105 4.105 18 C -0.150 4.150 19 C 0.013 3.987 20 C -0.227 4.227 21 C 0.162 3.838 22 O -0.140 6.140 23 C -0.384 4.384 24 H 0.099 0.901 25 C 0.042 3.958 26 N -0.840 5.840 27 Si 0.944 3.056 28 H -0.266 1.266 29 H -0.275 1.275 30 H -0.266 1.266 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.609 13.475 5.089 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C -0.006 4.006 4 C -0.138 4.138 5 C -0.194 4.194 6 C 0.103 3.897 7 C -0.213 4.213 8 C -0.051 4.051 9 N -0.118 5.118 10 C 0.358 3.642 11 O -0.355 6.355 12 N -0.323 5.323 13 C 0.057 3.943 14 C -0.137 4.137 15 C -0.119 4.119 16 C -0.158 4.158 17 C -0.123 4.123 18 C -0.171 4.171 19 C -0.005 4.005 20 C -0.247 4.247 21 C 0.103 3.897 22 O -0.040 6.040 23 C -0.459 4.459 24 H 0.117 0.883 25 C -0.166 4.166 26 N -0.471 5.471 27 Si 0.768 3.232 28 H -0.190 1.190 29 H -0.200 1.200 30 H -0.191 1.191 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.152 0.848 36 H 0.240 0.760 37 H 0.160 0.840 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.935 13.467 4.960 15.176 hybrid contribution 0.628 0.480 0.060 0.793 sum -4.307 13.947 5.020 15.436 Atomic orbital electron populations 1.22885 0.80367 1.02957 1.00243 1.86226 1.19390 1.26244 1.90029 1.17871 0.89221 0.84489 1.09038 1.20690 0.98173 0.90557 1.04392 1.17803 0.92817 0.90535 1.18229 1.22918 0.91502 0.89301 0.85950 1.17698 1.08271 0.89358 1.05966 1.25661 0.93153 0.92780 0.93483 1.81257 1.10003 1.11403 1.09123 1.17744 0.81073 0.84386 0.80974 1.91007 1.56069 1.22066 1.66360 1.43495 1.36507 1.12370 1.39915 1.17723 0.89505 0.96044 0.90999 1.21386 1.00141 0.97617 0.94507 1.21116 0.94285 0.98809 0.97657 1.21132 0.99729 0.94127 1.00785 1.20883 0.97627 0.97701 0.96112 1.20882 0.95085 0.99649 1.01456 1.20382 0.91723 0.97020 0.91419 1.20465 1.00618 0.90741 1.12857 1.18956 0.88248 0.87398 0.95058 1.83953 1.19820 1.26306 1.73871 1.21570 0.78419 0.96529 1.49384 0.88331 1.25446 1.00977 0.94165 0.95964 1.70017 1.36872 0.98810 1.41387 0.85715 0.79574 0.78301 0.79627 1.19046 1.20009 1.19116 0.93566 0.89126 0.93560 0.86039 0.84812 0.76025 0.83981 0.85698 0.86200 0.85988 0.86077 0.87722 0.84828 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.28 10.28 -34.12 -0.35 -6.63 16 3 C 0.04 0.80 6.70 -39.11 -0.26 0.54 16 4 C -0.12 -1.97 8.79 -38.90 -0.34 -2.31 16 5 C -0.19 -3.04 4.60 -105.09 -0.48 -3.52 16 6 C 0.13 1.53 9.52 -36.44 -0.35 1.18 16 7 C -0.21 -2.50 5.73 -104.52 -0.60 -3.10 16 8 C 0.26 3.15 14.21 -22.47 -0.32 2.83 16 9 N -0.44 -5.90 18.54 41.83 0.78 -5.13 16 10 C 0.57 7.88 6.63 -12.67 -0.08 7.80 16 11 O -0.48 -8.18 9.73 5.22 0.05 -8.13 16 12 N -0.68 -8.16 5.29 -10.93 -0.06 -8.22 16 13 C 0.15 1.94 6.29 -83.72 -0.53 1.41 16 14 C -0.12 -1.62 8.69 -39.39 -0.34 -1.96 16 15 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 16 C -0.14 -1.50 10.04 -39.54 -0.40 -1.90 16 17 C -0.10 -1.07 10.04 -39.61 -0.40 -1.47 16 18 C -0.15 -1.65 9.97 -39.39 -0.39 -2.04 16 19 C 0.01 0.24 6.57 -39.43 -0.26 -0.02 16 20 C -0.23 -4.75 9.06 -39.86 -0.36 -5.11 16 21 C 0.16 3.79 6.67 -38.69 -0.26 3.53 16 22 O -0.14 -3.87 9.52 -13.54 -0.13 -4.00 16 23 C -0.38 -10.22 9.44 30.93 0.29 -9.93 16 24 H 0.10 2.41 5.27 -52.49 -0.28 2.14 16 25 C 0.04 1.10 5.50 -17.51 -0.10 1.00 16 26 N -0.84 -23.47 13.67 55.48 0.76 -22.71 16 27 Si 0.94 19.42 29.55 -169.99 -5.02 14.40 16 28 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 29 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 30 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 31 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 34 H 0.12 1.61 6.29 -52.49 -0.33 1.28 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.40 4.08 7.72 -40.82 -0.31 3.77 16 37 H 0.14 2.20 6.25 -52.48 -0.33 1.87 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.10 1.71 7.00 -52.48 -0.37 1.34 16 43 H 0.13 2.80 5.68 -52.49 -0.30 2.50 16 44 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -31.62 386.48 -7.12 -38.74 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.38 Total: 9.13 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -4.58 Total: -13.27 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 1.48 Total: -36.05 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.43 Total: -18.77 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.62 -7.12 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212796431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.127 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds