Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76199 * 103.00064 * 2 1 4 4 C 1.38976 * 120.07922 * 179.97438 * 3 2 1 5 5 C 1.38080 * 119.91907 * 180.02562 * 4 3 2 6 6 C 1.38305 * 120.07983 * 359.97438 * 5 4 3 7 7 S 1.76197 * 119.92116 * 180.02562 * 6 5 4 8 8 O 1.42105 * 106.40024 * 336.46019 * 7 6 5 9 9 O 1.42098 * 106.40503 * 203.54128 * 7 6 5 10 10 N 1.65600 * 107.21933 * 89.99900 * 7 6 5 11 11 C 1.46498 * 119.99883 * 278.36441 * 10 7 6 12 12 C 1.38862 * 119.99914 * 98.35961 * 10 7 6 13 13 C 1.39562 * 119.84277 * 300.78125 * 12 10 7 14 14 C 1.36343 * 120.16083 * 179.71714 * 13 12 10 15 15 C 1.40881 * 119.83397 * 0.55514 * 14 13 12 16 16 C 1.41138 * 120.15613 * 179.70150 * 15 14 13 17 17 H 1.08002 * 119.99650 * 206.81536 * 16 15 14 18 18 C 1.39868 * 120.00034 * 26.81216 * 16 15 14 19 19 N 1.30899 * 119.99908 * 11.93232 * 18 16 15 20 20 Si 1.86792 * 119.99991 * 191.92563 * 18 16 15 21 21 H 1.48500 * 109.47383 * 60.00225 * 20 18 16 22 22 H 1.48506 * 109.47237 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47454 * 300.00214 * 20 18 16 24 24 C 1.40889 * 119.69149 * 359.71542 * 15 14 13 25 25 C 1.36337 * 119.83320 * 0.02562 * 24 15 14 26 26 C 1.38300 * 120.16070 * 0.27624 * 6 5 4 27 27 C 1.38089 * 120.07882 * 359.45065 * 26 6 5 28 28 H 1.09002 * 109.47054 * 299.99972 * 1 2 3 29 29 H 1.08999 * 109.47072 * 60.00149 * 1 2 3 30 30 H 1.09003 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.04310 * 359.97438 * 4 3 2 32 32 H 1.08000 * 119.96340 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47271 * 269.99403 * 11 10 7 34 34 H 1.08997 * 109.47457 * 29.99903 * 11 10 7 35 35 H 1.09005 * 109.46645 * 149.99900 * 11 10 7 36 36 H 1.08008 * 119.91946 * 359.97438 * 13 12 10 37 37 H 1.07994 * 120.08263 * 180.27543 * 14 13 12 38 38 H 0.96995 * 120.00406 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.08626 * 179.97438 * 24 15 14 40 40 H 1.08001 * 119.91909 * 179.97438 * 25 24 15 41 41 H 1.07996 * 119.96362 * 179.72652 * 26 6 5 42 42 H 1.08008 * 120.03955 * 180.27160 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5389 2.1250 0.0005 5 6 3.8457 3.4712 0.0011 6 6 2.8329 4.4131 0.0005 7 16 3.2292 6.1299 0.0005 8 8 4.5370 6.2398 0.5456 9 8 2.1016 6.8021 0.5444 10 7 3.3402 6.6074 -1.5812 11 6 4.5727 6.3645 -2.3349 12 6 2.2650 7.2379 -2.1932 13 6 1.0341 6.5858 -2.2783 14 6 -0.0276 7.2011 -2.8726 15 6 0.1235 8.4938 -3.4120 16 6 -0.9692 9.1346 -4.0344 17 1 -0.7956 9.8776 -4.7986 18 6 -2.2769 8.8072 -3.6614 19 7 -2.4911 8.0902 -2.5874 20 14 -3.7176 9.3934 -4.6957 21 1 -3.5912 8.8520 -6.0726 22 1 -4.9875 8.9173 -4.0907 23 1 -3.7197 10.8776 -4.7457 24 6 1.3707 9.1438 -3.3275 25 6 2.4221 8.5185 -2.7256 26 6 1.5098 4.0106 0.0052 27 6 1.1953 2.6660 -0.0010 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.3303 1.3901 0.0014 32 1 4.8779 3.7892 0.0019 33 1 5.2424 7.2169 -2.2209 34 1 5.0599 5.4664 -1.9552 35 1 4.3329 6.2294 -3.3897 36 1 0.9210 5.5928 -1.8686 37 1 -0.9807 6.6970 -2.9338 38 1 -3.3979 7.8634 -2.3284 39 1 1.4937 10.1346 -3.7392 40 1 3.3788 9.0153 -2.6605 41 1 0.7215 4.7488 0.0093 42 1 0.1618 2.3524 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224984841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = -34.480209 kcal Electronic energy + Delta-G solvation = -27678.573016 eV Core-core repulsion = 23841.095672 eV Total energy + Delta-G solvation = -3837.477344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.075 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20744 -39.91559 -38.38522 -37.06055 -36.96949 -34.94532 -32.74454 -32.39329 -31.54259 -30.90286 -29.80552 -27.90003 -25.98314 -24.66459 -23.94845 -22.89915 -22.68173 -20.22588 -19.41721 -19.24583 -18.73511 -18.22768 -17.70446 -17.04439 -16.65138 -16.08435 -15.93877 -15.82964 -15.61558 -15.51739 -14.92527 -14.78296 -14.59297 -14.45095 -14.17525 -14.00764 -13.92255 -13.82411 -13.66873 -13.31993 -13.26082 -13.25406 -13.19009 -12.79623 -12.69202 -12.54903 -12.40114 -12.25765 -12.03857 -11.70805 -11.52493 -11.37834 -11.28400 -11.08798 -10.28158 -10.21898 -9.48917 -9.01942 -8.65614 -8.59814 -6.31819 -0.78361 -0.44899 0.12830 0.34947 0.86532 1.15300 1.25953 1.41016 1.51629 1.53743 1.85239 2.22540 2.30213 2.67727 2.74787 3.21148 3.61746 3.67746 3.71692 4.04775 4.09680 4.18118 4.19049 4.26949 4.33668 4.40995 4.45367 4.62686 4.74719 4.78659 4.80871 4.82875 4.92772 4.94887 4.97318 5.04246 5.14422 5.27902 5.35028 5.50098 5.58431 5.67768 6.04934 6.07636 6.19703 6.36626 6.67457 6.93057 7.02585 8.35361 Molecular weight = 363.07amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.003320 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.735261 B = 8432.684669 C =10605.711357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.100 6.100 3 C -0.041 4.041 4 C -0.124 4.124 5 C -0.006 4.006 6 C -0.687 4.687 7 S 2.689 3.311 8 O -0.976 6.976 9 O -0.985 6.985 10 N -0.929 5.929 11 C 0.082 3.918 12 C 0.014 3.986 13 C -0.108 4.108 14 C -0.171 4.171 15 C 0.080 3.920 16 C -0.490 4.490 17 H 0.081 0.919 18 C 0.032 3.968 19 N -0.827 5.827 20 Si 0.986 3.014 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.226 4.226 25 C -0.087 4.087 26 C -0.013 4.013 27 C -0.159 4.159 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.288 0.712 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -16.161 2.527 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.145 5.855 3 C -0.154 4.154 4 C -0.149 4.149 5 C -0.027 4.027 6 C -0.779 4.779 7 S 2.785 3.215 8 O -0.967 6.967 9 O -0.975 6.975 10 N -0.761 5.761 11 C -0.061 4.061 12 C -0.080 4.080 13 C -0.129 4.129 14 C -0.191 4.191 15 C 0.078 3.922 16 C -0.519 4.519 17 H 0.099 0.901 18 C -0.183 4.183 19 N -0.453 5.453 20 Si 0.806 3.194 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.185 1.185 24 C -0.246 4.246 25 C -0.108 4.108 26 C -0.035 4.035 27 C -0.184 4.184 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.152 0.848 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.935 -16.867 3.432 18.954 hybrid contribution -1.876 1.017 -0.487 2.189 sum 6.059 -15.850 2.945 17.222 Atomic orbital electron populations 1.23926 0.92030 1.09075 1.06807 1.85497 1.09493 0.99936 1.90536 1.22401 0.97083 0.98363 0.97589 1.21188 0.95108 0.96173 1.02397 1.21138 0.98972 0.92252 0.90364 1.30723 1.01582 1.24803 1.20826 1.01888 0.72674 0.74342 0.72590 1.93511 1.39460 1.86964 1.76731 1.93558 1.53544 1.73415 1.76990 1.54365 1.20791 1.71462 1.29433 1.21853 0.83759 1.02326 0.98169 1.16717 0.87099 0.94030 1.10183 1.20742 0.93451 0.98362 1.00364 1.20972 0.97892 0.95749 1.04513 1.18039 0.92801 0.91404 0.89993 1.19833 0.91250 1.20945 1.19882 0.90114 1.26795 1.03049 0.93415 0.95016 1.69893 1.24472 1.30167 1.20758 0.85195 0.75773 0.79510 0.78883 1.18210 1.19397 1.18536 1.20891 0.94469 1.00106 1.09164 1.20604 0.98435 0.93006 0.98728 1.20935 0.94602 0.97198 0.90752 1.21485 1.00032 0.92233 1.04668 0.88696 0.88950 0.84823 0.81764 0.81847 0.91315 0.89196 0.89858 0.87835 0.87081 0.90118 0.87436 0.86099 0.85167 0.83017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.15 113.37 1.04 -0.64 16 2 S -0.10 -1.64 22.56 -56.49 -1.27 -2.91 16 3 C -0.04 -0.89 6.11 22.62 0.14 -0.75 16 4 C -0.12 -2.58 9.79 22.41 0.22 -2.36 16 5 C -0.01 -0.14 9.51 22.25 0.21 0.07 16 6 C -0.69 -20.75 5.98 22.30 0.13 -20.61 16 7 S 2.69 97.18 5.35 -56.49 -0.30 96.87 16 8 O -0.98 -35.29 16.65 -128.00 -2.13 -37.42 16 9 O -0.98 -44.41 16.01 -128.00 -2.05 -46.46 16 10 N -0.93 -32.80 3.21 -360.38 -1.16 -33.96 16 11 C 0.08 2.15 10.05 127.77 1.28 3.43 16 12 C 0.01 0.60 4.90 38.67 0.19 0.79 16 13 C -0.11 -5.04 9.14 22.15 0.20 -4.84 16 14 C -0.17 -8.94 8.62 22.48 0.19 -8.75 16 15 C 0.08 4.29 5.57 -21.27 -0.12 4.17 16 16 C -0.49 -25.82 9.05 23.38 0.21 -25.61 16 17 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 18 C 0.03 1.57 5.24 85.23 0.45 2.02 16 19 N -0.83 -42.96 10.76 21.82 0.23 -42.73 16 20 Si 0.99 37.41 29.58 68.60 2.03 39.44 16 21 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 22 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.23 -10.91 9.74 22.48 0.22 -10.70 16 25 C -0.09 -3.78 9.60 22.15 0.21 -3.57 16 26 C -0.01 -0.41 8.29 22.25 0.18 -0.22 16 27 C -0.16 -3.90 9.36 22.41 0.21 -3.69 16 28 H 0.09 0.99 7.75 -2.39 -0.02 0.97 16 29 H 0.09 1.04 7.75 -2.39 -0.02 1.03 16 30 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.16 3.14 7.61 -2.91 -0.02 3.12 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.09 1.79 7.99 -2.39 -0.02 1.77 16 35 H 0.08 2.04 8.05 -2.38 -0.02 2.02 16 36 H 0.10 4.33 5.90 -2.91 -0.02 4.31 16 37 H 0.11 6.02 6.10 -2.91 -0.02 6.00 16 38 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.13 4.36 6.85 -2.91 -0.02 4.34 16 42 H 0.15 2.98 5.88 -2.91 -0.02 2.96 16 Total: -1.00 -69.01 376.04 1.37 -67.64 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 1.05 Total: 30.80 kcal Atomic # 6 Polarization: -76.24 SS G_CDS: 4.97 Total: -71.27 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -0.92 Total: -76.69 kcal Atomic # 8 Polarization: -79.70 SS G_CDS: -4.18 Total: -83.88 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -1.58 Total: 93.96 kcal Total: -69.01 1.37 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224984841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.158 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds