Wall clock time and date at job start Tue Mar 31 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86800 * 119.99953 * 2 1 4 4 H 1.48504 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46933 * 299.99737 * 3 2 1 6 6 H 1.48495 * 109.47358 * 59.99641 * 3 2 1 7 7 C 1.39908 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00132 * 175.55961 * 7 2 1 9 9 C 1.41153 * 120.00318 * 355.56409 * 7 2 1 10 10 C 1.40864 * 120.16258 * 214.78177 * 9 7 2 11 11 C 1.36379 * 119.82763 * 180.02562 * 10 9 7 12 12 C 1.39477 * 120.16834 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83620 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99937 * 35.28336 * 13 12 11 15 15 O 1.21285 * 120.00122 * 355.71714 * 14 13 12 16 16 C 1.50700 * 119.99933 * 175.71138 * 14 13 12 17 17 C 1.52998 * 109.47111 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47492 * 180.02562 * 17 16 14 19 19 C 1.38268 * 119.98205 * 269.97908 * 18 17 16 20 20 C 1.38202 * 120.04084 * 179.97438 * 19 18 17 21 21 C 1.38349 * 119.99670 * 0.04217 * 20 19 18 22 22 Cl 1.73598 * 120.01566 * 180.25455 * 21 20 19 23 23 C 1.38438 * 119.96452 * 359.97438 * 21 20 19 24 24 Cl 1.73600 * 120.02238 * 180.02562 * 23 21 20 25 25 C 1.38203 * 119.97953 * 89.99649 * 18 17 16 26 26 C 1.39480 * 120.33338 * 0.26077 * 12 11 10 27 27 C 1.36378 * 120.16702 * 359.47846 * 26 12 11 28 28 H 0.96995 * 120.00154 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.09204 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.91954 * 179.97438 * 11 10 9 31 31 H 0.96996 * 119.99907 * 215.29590 * 13 12 11 32 32 H 1.08990 * 109.47185 * 60.00538 * 16 14 13 33 33 H 1.09002 * 109.47010 * 300.00359 * 16 14 13 34 34 H 1.09007 * 109.47255 * 59.99963 * 17 16 14 35 35 H 1.09001 * 109.46878 * 300.00328 * 17 16 14 36 36 H 1.07999 * 119.97863 * 0.02562 * 19 18 17 37 37 H 1.07994 * 120.00149 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.00354 * 0.02688 * 25 18 17 39 39 H 1.07999 * 119.91732 * 179.74446 * 26 12 11 40 40 H 1.08004 * 120.08550 * 180.26253 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2131 -0.0719 9 6 1.3057 -2.4322 0.0956 10 6 1.8650 -3.5180 0.7975 11 6 1.1805 -4.6943 0.8847 12 6 -0.0705 -4.8237 0.2815 13 7 -0.7631 -6.0280 0.3743 14 6 -0.6805 -6.7680 1.4978 15 8 0.0573 -6.4248 2.3972 16 6 -1.5050 -8.0218 1.6365 17 6 -1.2268 -8.6674 2.9954 18 6 -2.0508 -9.9215 3.1340 19 6 -3.3182 -9.8584 3.6832 20 6 -4.0751 -11.0077 3.8104 21 6 -3.5644 -12.2224 3.3888 22 17 -4.5173 -13.6654 3.5422 23 6 -2.2953 -12.2857 2.8392 24 17 -1.6533 -13.8090 2.3091 25 6 -1.5391 -11.1341 2.7124 26 6 -0.6285 -3.7547 -0.4193 27 6 0.0417 -2.5704 -0.5106 28 1 -0.4850 0.8400 -0.0004 29 1 2.8337 -3.4195 1.2648 30 1 1.6081 -5.5278 1.4221 31 1 -1.3048 -6.3345 -0.3696 32 1 -1.2416 -8.7196 0.8418 33 1 -2.5632 -7.7707 1.5637 34 1 -1.4905 -7.9693 3.7901 35 1 -0.1686 -8.9183 3.0686 36 1 -3.7171 -8.9103 4.0123 37 1 -5.0650 -10.9577 4.2390 38 1 -0.5489 -11.1828 2.2841 39 1 -1.5958 -3.8636 -0.8873 40 1 -0.3936 -1.7421 -1.0500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225324818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:34 Heat of formation + Delta-G solvation = -16.810526 kcal Electronic energy + Delta-G solvation = -25177.666626 eV Core-core repulsion = 21201.034990 eV Total energy + Delta-G solvation = -3976.631637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19281 -39.57334 -37.41235 -36.99714 -36.91056 -34.56109 -33.98650 -32.93094 -31.36209 -30.17658 -29.58715 -28.71312 -25.69968 -24.25828 -23.41222 -21.92595 -21.32421 -20.65809 -19.59457 -17.74341 -17.37991 -16.92914 -16.56844 -16.37824 -15.81929 -15.30398 -15.15350 -14.58242 -14.36393 -14.16421 -13.97151 -13.66439 -13.48898 -12.85398 -12.69981 -12.61370 -12.27475 -12.26906 -12.13165 -12.02555 -11.72066 -11.48781 -11.38665 -11.36905 -11.23517 -11.19755 -11.15075 -10.96161 -10.75253 -10.03778 -9.51740 -9.47069 -9.39078 -9.19050 -8.98252 -8.87861 -7.57386 -6.89063 -6.64021 -4.36543 0.50914 0.65779 1.43997 1.80968 2.51545 2.97594 2.98972 3.06307 3.08848 3.14074 3.30974 3.66995 3.96568 4.17800 4.35891 4.65360 4.67685 4.70670 4.76182 4.88163 5.00683 5.15486 5.27581 5.45221 5.50182 5.58936 5.62734 5.67395 5.92098 6.08722 6.16459 6.19314 6.42000 6.72927 6.89065 7.04788 7.18491 7.27374 7.61488 7.71926 7.84124 8.04308 8.23454 8.29234 8.60094 8.71651 8.90802 8.97710 10.27087 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.031617 B = 0.001454 C = 0.001428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.378857 B =19258.705843 C =19609.283404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.002 3.998 13 N -0.652 5.652 14 C 0.497 3.503 15 O -0.532 6.532 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.059 4.059 19 C -0.099 4.099 20 C -0.096 4.096 21 C -0.038 4.038 22 Cl -0.054 7.054 23 C -0.028 4.028 24 Cl -0.051 7.051 25 C -0.097 4.097 26 C -0.121 4.121 27 C -0.141 4.141 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.396 0.604 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 -22.215 4.095 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.090 4.090 13 N -0.295 5.295 14 C 0.284 3.716 15 O -0.409 6.409 16 C -0.174 4.174 17 C -0.105 4.105 18 C -0.059 4.059 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.066 4.066 22 Cl -0.025 7.025 23 C -0.056 4.056 24 Cl -0.022 7.022 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.161 4.161 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.229 0.771 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.109 0.891 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.433 -22.081 4.715 24.470 hybrid contribution -0.153 0.340 -0.339 0.504 sum -9.586 -21.741 4.376 24.160 Atomic orbital electron populations 1.69766 1.07291 1.28613 1.38272 1.25884 0.94944 1.01191 0.92551 0.86147 0.80611 0.80831 0.78396 1.18570 1.19998 1.19983 1.19543 0.94781 0.90211 1.44594 0.90548 1.17740 0.92310 0.92045 0.88268 1.20813 1.01221 0.94992 1.05518 1.20397 0.92776 0.97863 0.99533 1.17278 0.94240 0.85914 1.11568 1.43027 1.48757 1.21353 1.16331 1.20523 0.83531 0.85335 0.82246 1.90698 1.39170 1.70992 1.40041 1.21627 1.01219 0.95712 0.98830 1.20394 1.00015 0.92689 0.97397 1.20062 0.94705 0.94863 0.96292 1.21226 0.93550 0.98563 0.98409 1.21062 1.00877 0.90048 0.99510 1.20785 0.92091 0.89496 1.04223 1.98391 1.71080 1.36605 1.96428 1.20781 0.93487 0.88745 1.02574 1.98397 1.86041 1.29194 1.88599 1.21019 1.00457 0.89915 1.00140 1.20322 0.98367 0.93200 1.02266 1.21196 0.97275 0.95567 1.02078 0.91196 0.88600 0.87465 0.77087 0.89006 0.88874 0.89277 0.89460 0.84117 0.83973 0.83832 0.89106 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.93 10.59 55.55 0.59 -20.34 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.85 29.56 -169.99 -5.03 13.82 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.19 9.02 -37.85 -0.34 -12.53 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.62 5.55 -106.80 -0.59 2.03 16 10 C -0.21 -5.13 9.74 -39.26 -0.38 -5.52 16 11 C -0.09 -2.01 8.61 -39.79 -0.34 -2.35 16 12 C 0.00 0.05 6.31 -83.57 -0.53 -0.48 16 13 N -0.65 -10.61 5.30 -9.74 -0.05 -10.66 16 14 C 0.50 7.68 7.66 -10.99 -0.08 7.59 16 15 O -0.53 -10.49 13.40 5.55 0.07 -10.41 16 16 C -0.13 -1.30 5.68 -27.88 -0.16 -1.46 16 17 C -0.07 -0.63 4.63 -27.88 -0.13 -0.76 16 18 C -0.06 -0.47 5.13 -104.62 -0.54 -1.01 16 19 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 20 C -0.10 -0.69 9.83 -39.55 -0.39 -1.08 16 21 C -0.04 -0.33 6.32 -39.47 -0.25 -0.58 16 22 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 23 C -0.03 -0.25 6.32 -39.47 -0.25 -0.50 16 24 Cl -0.05 -0.45 27.96 -51.86 -1.45 -1.90 16 25 C -0.10 -0.79 9.48 -39.55 -0.38 -1.17 16 26 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 27 C -0.14 -3.57 8.62 -39.26 -0.34 -3.91 16 28 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 29 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.11 2.46 6.22 -52.49 -0.33 2.13 16 31 H 0.40 4.92 8.82 -40.82 -0.36 4.56 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.90 8.04 -51.93 -0.42 0.49 16 35 H 0.09 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.13 3.45 6.13 -52.48 -0.32 3.12 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -30.09 374.02 -11.60 -41.69 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.35 Total: 8.32 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -5.57 Total: -24.25 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.54 Total: -31.00 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -2.90 Total: -3.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.09 -11.60 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225324818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.877 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds