Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86809 * 120.00013 * 2 1 4 4 H 1.48504 * 109.46832 * 240.00644 * 3 2 1 5 5 H 1.48501 * 109.46719 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47043 * 120.00373 * 3 2 1 7 7 C 1.39903 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99952 * 175.55362 * 7 2 1 9 9 C 1.41151 * 119.99858 * 355.55936 * 7 2 1 10 10 C 1.40868 * 120.16297 * 214.77855 * 9 7 2 11 11 C 1.36383 * 119.82815 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16836 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83371 * 179.97438 * 12 11 10 14 14 C 1.34784 * 119.99592 * 35.29123 * 13 12 11 15 15 O 1.21275 * 120.00202 * 355.71088 * 14 13 12 16 16 C 1.50702 * 119.99448 * 175.70463 * 14 13 12 17 17 C 1.52999 * 109.46564 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46944 * 180.02562 * 17 16 14 19 19 C 1.38332 * 120.00999 * 90.00620 * 18 17 16 20 20 Cl 1.73600 * 120.00686 * 359.69797 * 19 18 17 21 21 C 1.38363 * 119.98791 * 179.97438 * 19 18 17 22 22 C 1.38221 * 120.01167 * 359.97438 * 21 19 18 23 23 C 1.38223 * 120.02644 * 359.97438 * 22 21 19 24 24 C 1.38330 * 120.01886 * 269.98235 * 18 17 16 25 25 Cl 1.73599 * 120.00160 * 359.97438 * 24 18 17 26 26 C 1.39477 * 120.33264 * 0.26216 * 12 11 10 27 27 C 1.36373 * 120.17050 * 359.47703 * 26 12 11 28 28 H 0.97002 * 119.99955 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.08483 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.91202 * 179.97438 * 11 10 9 31 31 H 0.97001 * 120.00367 * 215.29069 * 13 12 11 32 32 H 1.09003 * 109.47097 * 60.00549 * 16 14 13 33 33 H 1.08990 * 109.47374 * 300.00150 * 16 14 13 34 34 H 1.09003 * 109.46853 * 60.00537 * 17 16 14 35 35 H 1.08995 * 109.47942 * 300.00366 * 17 16 14 36 36 H 1.07998 * 119.99268 * 179.97438 * 21 19 18 37 37 H 1.07998 * 119.98789 * 180.02562 * 22 21 19 38 38 H 1.08003 * 119.99572 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.91934 * 179.74274 * 26 12 11 40 40 H 1.08003 * 120.09238 * 180.25921 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6965 -1.2126 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2129 -0.0731 9 6 1.3057 -2.4322 0.0936 10 6 1.8650 -3.5186 0.7944 11 6 1.1804 -4.6950 0.8806 12 6 -0.0706 -4.8238 0.2775 13 7 -0.7632 -6.0282 0.3694 14 6 -0.6805 -6.7691 1.4924 15 8 0.0573 -6.4266 2.3919 16 6 -1.5052 -8.0229 1.6301 17 6 -1.2259 -8.6702 2.9881 18 6 -2.0500 -9.9243 3.1257 19 6 -1.5390 -11.1380 2.7021 20 17 0.0489 -11.2154 2.0046 21 6 -2.2958 -12.2893 2.8291 22 6 -3.5621 -12.2270 3.3797 23 6 -4.0729 -11.0147 3.8041 24 6 -3.3176 -9.8626 3.6761 25 17 -3.9593 -8.3401 4.2091 26 6 -0.6287 -3.7542 -0.4223 27 6 0.0415 -2.5699 -0.5126 28 1 -0.4850 0.8401 0.0004 29 1 2.8337 -3.4204 1.2616 30 1 1.6082 -5.5290 1.4173 31 1 -1.3051 -6.3341 -0.3746 32 1 -1.2419 -8.7202 0.8347 33 1 -2.5632 -7.7717 1.5576 34 1 -1.4889 -7.9731 3.7837 35 1 -0.1678 -8.9214 3.0602 36 1 -1.8970 -13.2368 2.4980 37 1 -4.1523 -13.1259 3.4790 38 1 -5.0626 -10.9665 4.2338 39 1 -1.5959 -3.8626 -0.8903 40 1 -0.3937 -1.7411 -1.0513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225347688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = -13.081175 kcal Electronic energy + Delta-G solvation = -25830.135820 eV Core-core repulsion = 21853.665901 eV Total energy + Delta-G solvation = -3976.469920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18920 -39.50199 -37.29074 -37.05537 -36.55851 -34.59112 -34.13186 -32.88199 -31.02209 -30.26628 -29.53950 -28.68414 -25.68372 -24.23965 -23.23761 -21.93569 -21.29485 -20.60758 -19.52436 -17.70475 -17.32930 -16.87186 -16.67237 -16.30602 -15.65742 -15.19203 -15.06739 -14.70621 -14.56145 -13.94573 -13.88776 -13.44542 -13.35244 -12.78857 -12.67183 -12.64247 -12.27450 -12.23597 -12.15091 -12.06807 -11.67216 -11.46125 -11.34061 -11.31541 -11.11243 -11.02937 -10.97923 -10.86882 -10.70484 -10.01043 -9.47141 -9.40888 -9.23791 -9.12722 -9.02055 -8.82653 -7.52052 -6.83396 -6.59423 -4.31928 0.56326 0.63492 1.53969 1.96545 2.58915 2.99172 3.06229 3.10020 3.11898 3.13597 3.37491 3.72847 3.99792 4.26090 4.42041 4.43333 4.72243 4.75022 4.88085 4.94811 5.07210 5.08437 5.34225 5.50224 5.55143 5.65137 5.69864 5.75077 6.00193 6.02652 6.15703 6.21900 6.47968 6.79001 6.95209 7.09466 7.23856 7.32504 7.66424 7.77776 7.90195 8.08687 8.29770 8.34393 8.64865 8.78977 8.95102 9.03016 10.31602 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.001962 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.759655 B =14267.378714 C =15145.788199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.653 5.653 14 C 0.501 3.499 15 O -0.530 6.530 16 C -0.130 4.130 17 C -0.076 4.076 18 C -0.061 4.061 19 C -0.025 4.025 20 Cl -0.050 7.050 21 C -0.105 4.105 22 C -0.102 4.102 23 C -0.105 4.105 24 C -0.025 4.025 25 Cl -0.049 7.049 26 C -0.122 4.122 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 -23.539 4.031 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.226 4.226 11 C -0.106 4.106 12 C -0.087 4.087 13 N -0.296 5.296 14 C 0.288 3.712 15 O -0.406 6.406 16 C -0.170 4.170 17 C -0.113 4.113 18 C -0.063 4.063 19 C -0.052 4.052 20 Cl -0.021 7.021 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.052 4.052 25 Cl -0.019 7.019 26 C -0.142 4.142 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.677 -22.990 4.673 25.377 hybrid contribution -0.038 0.712 -0.299 0.773 sum -9.715 -22.278 4.374 24.695 Atomic orbital electron populations 1.69754 1.07264 1.28754 1.38220 1.25877 0.94949 1.01136 0.92601 0.86252 0.79790 0.80150 0.79751 1.19076 1.20459 1.19109 1.19456 0.94679 0.90224 1.44853 0.90681 1.17721 0.92309 0.92009 0.88295 1.20813 1.01216 0.94998 1.05544 1.20400 0.92776 0.97862 0.99520 1.17277 0.94170 0.85875 1.11390 1.43017 1.48856 1.21352 1.16354 1.20434 0.83411 0.85176 0.82225 1.90687 1.39055 1.70932 1.39961 1.21539 1.01185 0.95777 0.98539 1.20492 1.00283 0.92486 0.98060 1.19674 0.93567 0.95283 0.97746 1.20735 0.88779 0.94109 1.01598 1.98406 1.22971 1.98470 1.82270 1.21171 0.94270 0.97533 0.99386 1.21060 0.95105 0.97747 0.98155 1.21179 1.00366 0.90916 0.99872 1.20752 0.94047 0.88378 1.02066 1.98414 1.85606 1.29471 1.88451 1.20318 0.98353 0.93188 1.02326 1.21192 0.97291 0.95556 1.02118 0.91128 0.88633 0.87461 0.77137 0.89119 0.89005 0.88807 0.88864 0.84302 0.84162 0.84286 0.89128 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.37 10.59 55.55 0.59 -20.78 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.92 19.24 29.56 -169.99 -5.03 14.21 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.45 9.02 -37.85 -0.34 -12.79 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.21 -5.29 9.74 -39.26 -0.38 -5.67 16 11 C -0.09 -2.08 8.61 -39.79 -0.34 -2.42 16 12 C 0.01 0.11 6.31 -83.57 -0.53 -0.41 16 13 N -0.65 -11.47 5.30 -9.74 -0.05 -11.52 16 14 C 0.50 8.60 7.66 -10.98 -0.08 8.52 16 15 O -0.53 -11.25 13.40 5.56 0.07 -11.18 16 16 C -0.13 -1.59 5.68 -27.88 -0.16 -1.74 16 17 C -0.08 -0.92 3.84 -27.88 -0.11 -1.03 16 18 C -0.06 -0.62 5.14 -104.55 -0.54 -1.16 16 19 C -0.03 -0.23 6.31 -39.50 -0.25 -0.48 16 20 Cl -0.05 -0.49 27.30 -51.86 -1.42 -1.91 16 21 C -0.10 -0.73 9.83 -39.54 -0.39 -1.11 16 22 C -0.10 -0.60 10.04 -39.59 -0.40 -1.00 16 23 C -0.10 -0.74 9.83 -39.54 -0.39 -1.13 16 24 C -0.03 -0.24 6.31 -39.50 -0.25 -0.49 16 25 Cl -0.05 -0.50 27.30 -51.86 -1.42 -1.92 16 26 C -0.12 -2.80 9.90 -39.79 -0.39 -3.19 16 27 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 28 H 0.28 6.71 8.30 -40.82 -0.34 6.38 16 29 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 30 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 31 H 0.40 5.42 8.82 -40.82 -0.36 5.06 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.27 6.86 -51.93 -0.36 0.91 16 35 H 0.09 1.23 6.87 -51.93 -0.36 0.87 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -30.82 370.21 -11.47 -42.29 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -4.23 Total: 9.58 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -5.57 Total: -24.35 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.54 Total: -32.30 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -2.83 Total: -3.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.82 -11.47 -42.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225347688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.204 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds