Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47012 * 300.00359 * 3 2 1 6 6 H 1.48492 * 109.46466 * 60.00392 * 3 2 1 7 7 C 1.37879 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99704 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.35042 * 125.92909 * 125.00268 * 10 9 7 12 12 C 1.35086 * 107.98100 * 179.97438 * 11 10 9 13 13 C 1.50697 * 126.07520 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47007 * 260.02515 * 13 12 11 15 15 C 1.47079 * 110.99908 * 189.99705 * 14 13 12 16 16 C 1.53072 * 110.13526 * 288.95475 * 15 14 13 17 17 C 1.53652 * 109.18251 * 289.64255 * 16 15 14 18 18 C 1.51120 * 107.32544 * 47.33072 * 17 16 15 19 19 N 1.30066 * 128.36678 * 164.97127 * 18 17 16 20 20 N 1.40315 * 108.23634 * 180.16197 * 19 18 17 21 21 H 0.97001 * 126.04406 * 179.71362 * 20 19 18 22 22 C 1.36192 * 107.91524 * 359.97044 * 20 19 18 23 23 C 1.35079 * 107.49642 * 359.95065 * 22 20 19 24 24 C 1.40845 * 107.84433 * 0.22840 * 12 11 10 25 25 C 1.48422 * 126.03131 * 179.77306 * 24 12 11 26 26 C 1.39327 * 120.12030 * 324.72259 * 25 24 12 27 27 C 1.38025 * 119.87660 * 179.72563 * 26 25 24 28 28 C 1.38320 * 120.11705 * 0.55283 * 27 26 25 29 29 C 1.38316 * 120.24511 * 359.72501 * 28 27 26 30 30 C 1.38021 * 120.12048 * 359.97438 * 29 28 27 31 31 N 1.31618 * 107.92848 * 359.61299 * 24 12 11 32 32 H 0.97000 * 119.99974 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46882 * 60.00243 * 9 7 2 34 34 H 1.08995 * 109.47073 * 300.00343 * 9 7 2 35 35 H 1.08000 * 126.00638 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.47010 * 140.02995 * 13 12 11 37 37 H 1.09006 * 109.47034 * 20.02652 * 13 12 11 38 38 H 1.09001 * 109.36118 * 168.75112 * 15 14 13 39 39 H 1.09000 * 109.35710 * 49.15849 * 15 14 13 40 40 H 1.09004 * 109.51930 * 169.72867 * 16 15 14 41 41 H 1.09007 * 109.56459 * 49.58372 * 16 15 14 42 42 H 1.09000 * 109.88385 * 287.87974 * 17 16 15 43 43 H 1.08998 * 109.94979 * 166.81853 * 17 16 15 44 44 H 1.08001 * 126.25418 * 179.97438 * 22 20 19 45 45 H 1.07999 * 120.05902 * 359.97438 * 26 25 24 46 46 H 1.08000 * 119.93876 * 180.27493 * 27 26 25 47 47 H 1.08001 * 119.87647 * 179.74475 * 28 27 26 48 48 H 1.08002 * 119.94194 * 180.02562 * 29 28 27 49 49 H 1.07995 * 120.06219 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.2419 -4.6229 0.8935 12 6 3.2579 -5.4447 0.5510 13 6 3.6652 -6.7018 1.2755 14 7 4.8240 -6.4191 2.1329 15 6 5.3968 -7.6621 2.6715 16 6 4.4566 -8.2654 3.7180 17 6 4.4651 -7.3808 4.9742 18 6 4.3015 -5.9495 4.5179 19 7 3.9904 -4.9059 5.2292 20 7 3.9500 -3.7908 4.3784 21 1 3.7397 -2.8807 4.6399 22 6 4.2526 -4.2132 3.1195 23 6 4.4754 -5.5441 3.1802 24 6 3.8725 -4.9146 -0.6001 25 6 5.0362 -5.4959 -1.3147 26 6 6.0461 -6.1373 -0.6006 27 6 7.1232 -6.6812 -1.2708 28 6 7.2067 -6.5802 -2.6478 29 6 6.2099 -5.9395 -3.3612 30 6 5.1253 -5.3975 -2.7017 31 7 3.2305 -3.8146 -0.9320 32 1 -0.4850 0.8401 0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6246 -2.5570 0.8896 35 1 1.5770 -4.7517 1.7347 36 1 3.9296 -7.4702 0.5491 37 1 2.8356 -7.0522 1.8896 38 1 6.3602 -7.4456 3.1334 39 1 5.5396 -8.3755 1.8599 40 1 4.7953 -9.2687 3.9766 41 1 3.4452 -8.3152 3.3144 42 1 5.4119 -7.4957 5.5021 43 1 3.6394 -7.6577 5.6297 44 1 4.3052 -3.5966 2.2344 45 1 5.9841 -6.2124 0.4750 46 1 7.9043 -7.1825 -0.7187 47 1 8.0533 -7.0035 -3.1679 48 1 6.2799 -5.8638 -4.4363 49 1 4.3473 -4.8978 -3.2596 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225744821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = 184.328664 kcal Electronic energy + Delta-G solvation = -33028.216171 eV Core-core repulsion = 28958.281961 eV Total energy + Delta-G solvation = -4069.934211 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.50425 -40.48687 -38.51744 -37.78928 -34.23329 -33.52512 -32.27674 -30.84544 -30.59279 -30.27941 -29.76884 -29.01496 -27.38060 -25.76485 -24.30332 -23.65255 -22.36059 -22.07046 -21.72631 -20.84859 -19.88270 -19.32527 -18.57448 -17.61253 -16.68619 -16.50094 -15.84946 -15.44239 -15.29817 -14.97807 -14.79806 -14.66048 -14.38465 -14.29244 -13.95589 -13.78691 -13.54307 -13.15511 -12.96647 -12.85980 -12.66886 -12.41999 -12.31854 -12.29208 -12.08325 -11.67687 -11.63861 -11.28783 -11.14763 -11.00741 -10.95684 -10.83639 -10.69882 -10.65660 -10.32004 -9.90721 -9.78025 -9.27807 -9.06030 -9.03514 -8.70483 -8.63088 -8.11526 -7.69644 -7.49892 -6.32590 -4.38110 1.44092 1.72125 2.06798 2.64887 2.81758 2.97695 3.16178 3.24886 3.28530 3.30080 3.46846 4.04298 4.23972 4.26937 4.65987 4.73993 4.83781 4.97968 5.04043 5.06675 5.19336 5.21285 5.24237 5.33329 5.41540 5.45927 5.51526 5.58932 5.63345 5.70262 5.76765 5.80499 5.84475 5.87643 5.93583 6.03607 6.11770 6.17827 6.26624 6.40070 6.41684 6.58376 6.69487 6.78949 6.80344 6.95176 7.05685 7.10296 7.26195 7.34153 7.40109 7.54380 7.61780 7.78513 7.81949 7.91417 8.51798 8.71606 9.28366 10.76220 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.004230 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.053397 B = 6617.735880 C = 9434.115162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.322 5.322 11 C 0.057 3.943 12 C -0.240 4.240 13 C 0.138 3.862 14 N -0.451 5.451 15 C 0.052 3.948 16 C -0.153 4.153 17 C -0.035 4.035 18 C 0.048 3.952 19 N -0.286 5.286 20 N -0.484 5.484 21 H 0.443 0.557 22 C 0.085 3.915 23 C -0.053 4.053 24 C 0.093 3.907 25 C 0.004 3.996 26 C -0.106 4.106 27 C -0.130 4.130 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.098 4.098 31 N -0.265 5.265 32 H 0.267 0.733 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.157 0.843 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.177 0.823 45 H 0.161 0.839 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -17.291 4.611 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.101 5.101 11 C -0.093 4.093 12 C -0.253 4.253 13 C 0.012 3.988 14 N -0.170 5.170 15 C -0.076 4.076 16 C -0.193 4.193 17 C -0.074 4.074 18 C -0.123 4.123 19 N -0.109 5.109 20 N -0.194 5.194 21 H 0.287 0.713 22 C -0.062 4.062 23 C -0.158 4.158 24 C -0.070 4.070 25 C 0.002 3.998 26 C -0.125 4.125 27 C -0.148 4.148 28 C -0.145 4.145 29 C -0.148 4.148 30 C -0.117 4.117 31 N -0.089 5.089 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.194 0.806 45 H 0.178 0.822 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.115 -15.374 4.603 18.970 hybrid contribution -0.320 0.442 0.261 0.605 sum 9.795 -14.932 4.865 18.509 Atomic orbital electron populations 1.69922 1.06068 1.27598 1.49579 1.24932 0.94941 0.99533 0.94520 0.86311 0.80131 0.82528 0.77812 1.19472 1.20595 1.20794 1.21249 0.93954 0.89198 1.52246 0.91217 1.19740 0.85761 0.81396 0.99180 1.49374 1.23590 1.19106 1.18069 1.22157 1.00251 0.90493 0.96430 1.19493 1.02224 1.02390 1.01170 1.20351 0.90589 0.94085 0.93792 1.60001 1.29212 1.11467 1.16334 1.22282 0.97876 0.90471 0.96970 1.22200 1.01557 0.99162 0.96358 1.20151 1.02787 0.86857 0.97600 1.22628 1.00728 0.95645 0.93299 1.76846 1.23789 0.92918 1.17376 1.46386 1.57862 1.09843 1.05336 0.71279 1.22175 0.99892 0.95122 0.88986 1.18585 1.14410 0.92411 0.90428 1.20447 0.96491 0.94426 0.95676 1.17883 0.92264 0.97612 0.92040 1.22050 0.92156 0.95553 1.02769 1.21045 0.98441 1.01071 0.94216 1.21130 0.98675 1.00068 0.94589 1.20989 0.94682 0.99540 0.99560 1.21290 0.98146 0.98442 0.93861 1.77678 1.00912 1.16467 1.13881 0.92326 0.93702 0.92934 0.82546 0.90149 0.94220 0.90260 0.89989 0.90441 0.91230 0.89965 0.90201 0.80619 0.82153 0.86447 0.86814 0.86510 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 13.29 55.43 0.74 -23.93 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.03 9.24 -34.44 -0.32 -14.34 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.26 6.21 6.26 -5.19 -0.03 6.18 16 10 N -0.32 -6.87 3.67 -62.58 -0.23 -7.10 16 11 C 0.06 1.02 9.53 -17.26 -0.16 0.85 16 12 C -0.24 -3.92 4.27 -104.76 -0.45 -4.37 16 13 C 0.14 1.78 3.98 -4.98 -0.02 1.76 16 14 N -0.45 -5.47 2.50 -172.43 -0.43 -5.90 16 15 C 0.05 0.47 5.51 -3.69 -0.02 0.45 16 16 C -0.15 -1.24 5.92 -26.36 -0.16 -1.39 16 17 C -0.03 -0.33 6.42 -27.34 -0.18 -0.51 16 18 C 0.05 0.64 7.10 -82.15 -0.58 0.05 16 19 N -0.29 -4.22 12.67 33.86 0.43 -3.79 16 20 N -0.48 -6.80 7.42 30.64 0.23 -6.57 16 21 H 0.44 5.28 8.96 -182.43 -1.64 3.65 16 22 C 0.08 1.28 9.97 -16.74 -0.17 1.11 16 23 C -0.05 -0.73 5.17 -83.84 -0.43 -1.16 16 24 C 0.09 1.71 6.74 -82.78 -0.56 1.15 16 25 C 0.00 0.06 5.80 -104.89 -0.61 -0.54 16 26 C -0.11 -1.47 8.79 -39.25 -0.35 -1.82 16 27 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 28 C -0.13 -1.47 10.04 -39.52 -0.40 -1.87 16 29 C -0.13 -1.67 10.03 -39.63 -0.40 -2.07 16 30 C -0.10 -1.52 9.75 -39.26 -0.38 -1.90 16 31 N -0.27 -5.78 12.40 33.43 0.41 -5.36 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 36 H 0.08 0.97 7.57 -51.93 -0.39 0.57 16 37 H 0.04 0.50 6.91 -51.93 -0.36 0.14 16 38 H 0.08 0.71 8.11 -51.93 -0.42 0.28 16 39 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.62 6.66 -51.92 -0.35 0.27 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.18 2.98 7.24 -52.49 -0.38 2.60 16 45 H 0.16 2.16 4.57 -52.49 -0.24 1.92 16 46 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 47 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 397.80 15.07 5.99 5.99 Total: -1.00 -30.14 397.80 -11.53 -41.67 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.95 Total: 7.91 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -5.70 Total: -18.75 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 1.15 Total: -52.66 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.14 -11.53 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225744821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.001 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds