Wall clock time and date at job start Tue Mar 31 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47012 * 300.00359 * 3 2 1 6 6 H 1.48492 * 109.46466 * 60.00392 * 3 2 1 7 7 C 1.37879 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99704 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46825 * 179.97438 * 9 7 2 11 11 C 1.35042 * 125.92909 * 125.00268 * 10 9 7 12 12 C 1.35086 * 107.98100 * 179.97438 * 11 10 9 13 13 C 1.50697 * 126.07520 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.47007 * 260.02515 * 13 12 11 15 15 C 1.47079 * 110.99908 * 189.99705 * 14 13 12 16 16 C 1.53072 * 110.13526 * 288.95475 * 15 14 13 17 17 C 1.53652 * 109.18251 * 289.64255 * 16 15 14 18 18 C 1.51120 * 107.32544 * 47.33072 * 17 16 15 19 19 N 1.30066 * 128.36678 * 164.97127 * 18 17 16 20 20 N 1.40315 * 108.23634 * 180.16197 * 19 18 17 21 21 H 0.97001 * 126.04406 * 179.71362 * 20 19 18 22 22 C 1.36192 * 107.91524 * 359.97044 * 20 19 18 23 23 C 1.35079 * 107.49642 * 359.95065 * 22 20 19 24 24 C 1.40845 * 107.84433 * 0.22840 * 12 11 10 25 25 C 1.48422 * 126.03131 * 179.77306 * 24 12 11 26 26 C 1.39327 * 120.12030 * 324.72259 * 25 24 12 27 27 C 1.38025 * 119.87660 * 179.72563 * 26 25 24 28 28 C 1.38320 * 120.11705 * 0.55283 * 27 26 25 29 29 C 1.38316 * 120.24511 * 359.72501 * 28 27 26 30 30 C 1.38021 * 120.12048 * 359.97438 * 29 28 27 31 31 N 1.31618 * 107.92848 * 359.61299 * 24 12 11 32 32 H 0.97000 * 119.99974 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46882 * 60.00243 * 9 7 2 34 34 H 1.08995 * 109.47073 * 300.00343 * 9 7 2 35 35 H 1.08000 * 126.00638 * 0.02562 * 11 10 9 36 36 H 1.08997 * 109.47010 * 140.02995 * 13 12 11 37 37 H 1.09006 * 109.47034 * 20.02652 * 13 12 11 38 38 H 1.09001 * 109.36118 * 168.75112 * 15 14 13 39 39 H 1.09000 * 109.35710 * 49.15849 * 15 14 13 40 40 H 1.09004 * 109.51930 * 169.72867 * 16 15 14 41 41 H 1.09007 * 109.56459 * 49.58372 * 16 15 14 42 42 H 1.09000 * 109.88385 * 287.87974 * 17 16 15 43 43 H 1.08998 * 109.94979 * 166.81853 * 17 16 15 44 44 H 1.08001 * 126.25418 * 179.97438 * 22 20 19 45 45 H 1.07999 * 120.05902 * 359.97438 * 26 25 24 46 46 H 1.08000 * 119.93876 * 180.27493 * 27 26 25 47 47 H 1.08001 * 119.87647 * 179.74475 * 28 27 26 48 48 H 1.08002 * 119.94194 * 180.02562 * 29 28 27 49 49 H 1.07995 * 120.06219 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 2.2419 -4.6229 0.8935 12 6 3.2579 -5.4447 0.5510 13 6 3.6652 -6.7018 1.2755 14 7 4.8240 -6.4191 2.1329 15 6 5.3968 -7.6621 2.6715 16 6 4.4566 -8.2654 3.7180 17 6 4.4651 -7.3808 4.9742 18 6 4.3015 -5.9495 4.5179 19 7 3.9904 -4.9059 5.2292 20 7 3.9500 -3.7908 4.3784 21 1 3.7397 -2.8807 4.6399 22 6 4.2526 -4.2132 3.1195 23 6 4.4754 -5.5441 3.1802 24 6 3.8725 -4.9146 -0.6001 25 6 5.0362 -5.4959 -1.3147 26 6 6.0461 -6.1373 -0.6006 27 6 7.1232 -6.6812 -1.2708 28 6 7.2067 -6.5802 -2.6478 29 6 6.2099 -5.9395 -3.3612 30 6 5.1253 -5.3975 -2.7017 31 7 3.2305 -3.8146 -0.9320 32 1 -0.4850 0.8401 0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6246 -2.5570 0.8896 35 1 1.5770 -4.7517 1.7347 36 1 3.9296 -7.4702 0.5491 37 1 2.8356 -7.0522 1.8896 38 1 6.3602 -7.4456 3.1334 39 1 5.5396 -8.3755 1.8599 40 1 4.7953 -9.2687 3.9766 41 1 3.4452 -8.3152 3.3144 42 1 5.4119 -7.4957 5.5021 43 1 3.6394 -7.6577 5.6297 44 1 4.3052 -3.5966 2.2344 45 1 5.9841 -6.2124 0.4750 46 1 7.9043 -7.1825 -0.7187 47 1 8.0533 -7.0035 -3.1679 48 1 6.2799 -5.8638 -4.4363 49 1 4.3473 -4.8978 -3.2596 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225744821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:49 Heat of formation + Delta-G solvation = 168.249046 kcal Electronic energy + Delta-G solvation = -33028.913436 eV Core-core repulsion = 28958.281961 eV Total energy + Delta-G solvation = -4070.631475 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.61537 -41.86146 -39.60410 -38.72699 -35.84586 -34.78562 -33.81645 -31.99401 -31.63542 -31.50933 -31.05675 -30.09824 -28.96027 -26.94094 -25.53594 -25.10331 -23.38318 -23.19393 -22.88565 -21.94626 -21.27019 -20.60144 -19.58051 -18.78500 -18.61727 -17.76503 -17.21463 -16.50591 -16.36565 -16.33940 -15.95258 -15.82580 -15.70940 -15.41107 -15.20684 -14.86376 -14.60119 -14.48783 -14.11901 -14.08148 -13.97231 -13.63503 -13.57487 -13.40063 -13.31963 -13.14978 -12.85313 -12.73141 -12.55052 -12.32765 -12.12246 -11.99249 -11.92269 -11.76848 -11.67236 -11.52103 -11.25691 -10.79013 -10.49360 -10.31252 -10.05088 -9.66713 -9.47756 -9.01741 -8.60602 -8.38017 -6.52347 0.32121 0.68351 0.95162 1.20013 1.30891 1.34210 1.46096 1.73785 1.86741 1.92370 2.04036 2.29648 2.93392 3.07128 3.19575 3.70633 3.81833 3.83784 3.93645 4.11402 4.18756 4.22602 4.30311 4.33512 4.34428 4.50242 4.55355 4.63252 4.64648 4.74167 4.79155 4.84653 4.86196 4.89286 4.97334 4.98391 5.08929 5.10420 5.14826 5.17472 5.28068 5.41122 5.46582 5.50487 5.52707 5.62128 5.76019 5.77949 5.90405 5.96397 6.17806 6.27577 6.28651 6.37033 6.51417 6.60391 6.75895 7.04140 7.18091 8.69473 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.004230 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.053397 B = 6617.735880 C = 9434.115162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.021 3.979 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.274 3.726 10 N -0.346 5.346 11 C 0.053 3.947 12 C -0.225 4.225 13 C 0.147 3.853 14 N -0.456 5.456 15 C 0.048 3.952 16 C -0.145 4.145 17 C -0.036 4.036 18 C 0.048 3.952 19 N -0.306 5.306 20 N -0.487 5.487 21 H 0.447 0.553 22 C 0.065 3.935 23 C -0.048 4.048 24 C 0.099 3.901 25 C -0.027 4.027 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.116 4.116 29 C -0.131 4.131 30 C -0.120 4.120 31 N -0.319 5.319 32 H 0.272 0.728 33 H 0.016 0.984 34 H 0.048 0.952 35 H 0.169 0.831 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.150 0.850 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.150 0.850 48 H 0.137 0.863 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.365 -20.285 5.295 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.155 3.845 10 N -0.126 5.126 11 C -0.095 4.095 12 C -0.237 4.237 13 C 0.020 3.980 14 N -0.176 5.176 15 C -0.079 4.079 16 C -0.184 4.184 17 C -0.075 4.075 18 C -0.124 4.124 19 N -0.129 5.129 20 N -0.198 5.198 21 H 0.292 0.708 22 C -0.082 4.082 23 C -0.154 4.154 24 C -0.064 4.064 25 C -0.029 4.029 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.134 4.134 29 C -0.149 4.149 30 C -0.140 4.140 31 N -0.143 5.143 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.186 0.814 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.168 0.832 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.168 0.832 48 H 0.155 0.845 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.039 -18.391 5.298 23.159 hybrid contribution -1.097 1.235 0.010 1.652 sum 11.942 -17.155 5.308 21.566 Atomic orbital electron populations 1.70001 1.07229 1.28646 1.50066 1.25695 0.95743 1.02587 0.93929 0.85358 0.78458 0.78639 0.78345 1.19934 1.19993 1.19382 1.21351 0.93206 0.90727 1.52538 0.93011 1.19210 0.85876 0.81980 0.97398 1.48998 1.24207 1.19707 1.19691 1.22476 1.01009 0.89887 0.96161 1.19860 1.00661 1.02903 1.00313 1.20333 0.91341 0.92238 0.94059 1.59932 1.28434 1.13074 1.16126 1.22471 0.97995 0.89288 0.98136 1.22178 1.00966 1.00254 0.95049 1.20376 1.03875 0.84508 0.98703 1.23269 0.99288 0.96958 0.92841 1.76822 1.24672 0.93436 1.18017 1.46401 1.58173 1.10225 1.05008 0.70818 1.21938 1.01724 0.95814 0.88678 1.18711 1.13378 0.92026 0.91291 1.21010 0.96379 0.93197 0.95862 1.18023 0.92733 0.99670 0.92498 1.22138 0.92132 0.95293 1.02955 1.21447 0.98104 0.99881 0.94606 1.21569 0.98776 0.98331 0.94706 1.21256 0.93962 0.98922 1.00777 1.21278 0.99067 0.99757 0.93856 1.77599 1.02311 1.18901 1.15472 0.91882 0.96646 0.93370 0.81375 0.88448 0.93527 0.89607 0.87706 0.87220 0.91965 0.88336 0.89545 0.83237 0.81777 0.82935 0.83223 0.84481 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 13.29 21.45 0.28 -52.22 16 2 C 0.02 1.16 5.46 84.66 0.46 1.62 16 3 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.42 9.24 25.60 0.24 -30.18 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.27 14.33 6.26 85.63 0.54 14.87 16 10 N -0.35 -15.93 3.67 -351.91 -1.29 -17.22 16 11 C 0.05 2.00 9.53 83.47 0.80 2.80 16 12 C -0.23 -7.51 4.27 -19.95 -0.09 -7.59 16 13 C 0.15 3.56 3.98 85.56 0.34 3.90 16 14 N -0.46 -10.14 2.50 -699.46 -1.75 -11.89 16 15 C 0.05 0.67 5.51 86.29 0.48 1.15 16 16 C -0.15 -1.75 5.92 30.84 0.18 -1.56 16 17 C -0.04 -0.57 6.42 30.20 0.19 -0.38 16 18 C 0.05 1.19 7.10 43.59 0.31 1.50 16 19 N -0.31 -8.91 12.67 -46.80 -0.59 -9.50 16 20 N -0.49 -14.14 7.42 -56.99 -0.42 -14.56 16 21 H 0.45 11.37 8.96 -213.18 -1.91 9.46 16 22 C 0.07 2.03 9.97 83.29 0.83 2.86 16 23 C -0.05 -1.30 5.17 37.60 0.19 -1.10 16 24 C 0.10 3.81 6.74 42.53 0.29 4.10 16 25 C -0.03 -0.89 5.80 -20.04 -0.12 -1.01 16 26 C -0.11 -2.72 8.79 22.48 0.20 -2.53 16 27 C -0.12 -2.42 10.03 22.24 0.22 -2.20 16 28 C -0.12 -2.23 10.04 22.31 0.22 -2.00 16 29 C -0.13 -3.13 10.03 22.24 0.22 -2.91 16 30 C -0.12 -3.78 9.75 22.48 0.22 -3.56 16 31 N -0.32 -14.93 12.40 -48.16 -0.60 -15.53 16 32 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 2.50 8.07 -2.39 -0.02 2.48 16 35 H 0.17 5.73 8.06 -2.91 -0.02 5.70 16 36 H 0.10 2.08 7.57 -2.39 -0.02 2.06 16 37 H 0.05 1.08 6.91 -2.38 -0.02 1.07 16 38 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 39 H 0.10 1.06 7.91 -2.39 -0.02 1.04 16 40 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.88 6.66 -2.38 -0.02 0.86 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.15 5.48 7.24 -2.91 -0.02 5.46 16 45 H 0.17 4.03 4.57 -2.91 -0.01 4.02 16 46 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 48 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 49 H 0.10 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -69.82 397.80 2.47 -67.35 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.92 Total: 29.80 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 5.73 Total: -22.22 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.37 Total: -120.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.82 2.47 -67.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225744821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.596 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds