Wall clock time and date at job start Tue Mar 31 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46824 * 2 1 4 4 C 1.50698 * 109.47080 * 119.99656 * 2 1 3 5 5 H 1.07994 * 119.99884 * 114.92290 * 4 2 1 6 6 C 1.37873 * 120.00223 * 294.91626 * 4 2 1 7 7 N 1.31513 * 119.99843 * 352.83411 * 6 4 2 8 8 Si 1.86796 * 120.00072 * 172.82494 * 6 4 2 9 9 H 1.48505 * 109.47341 * 184.99270 * 8 6 4 10 10 H 1.48497 * 109.47500 * 304.99840 * 8 6 4 11 11 H 1.48503 * 109.47230 * 64.99682 * 8 6 4 12 12 N 1.46501 * 109.47326 * 239.99903 * 2 1 3 13 13 C 1.46493 * 119.99896 * 302.54673 * 12 2 1 14 14 S 1.65604 * 120.00016 * 122.53889 * 12 2 1 15 15 O 1.42094 * 106.39838 * 205.32253 * 14 12 2 16 16 O 1.42094 * 106.40318 * 338.24990 * 14 12 2 17 17 N 1.65602 * 107.21452 * 91.78681 * 14 12 2 18 18 C 1.46498 * 119.99807 * 277.09721 * 17 14 12 19 19 C 1.46498 * 119.99877 * 97.09391 * 17 14 12 20 20 C 1.50707 * 109.47010 * 94.12664 * 19 17 14 21 21 C 1.38213 * 120.00356 * 261.55169 * 20 19 17 22 22 C 1.38328 * 120.01111 * 179.76731 * 21 20 19 23 23 Cl 1.73594 * 119.98802 * 180.25024 * 22 21 20 24 24 C 1.38377 * 120.02270 * 0.50583 * 22 21 20 25 25 C 1.38166 * 120.01519 * 359.74109 * 24 22 21 26 26 C 1.38431 * 120.00532 * 81.82245 * 20 19 17 27 27 F 1.35092 * 120.01559 * 0.02562 * 26 20 19 28 28 H 1.09004 * 109.47306 * 60.00026 * 1 2 3 29 29 H 1.09003 * 109.46824 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47355 * 300.00046 * 1 2 3 31 31 H 0.97007 * 120.00142 * 174.99694 * 7 6 4 32 32 H 1.09000 * 109.47636 * 89.99505 * 13 12 2 33 33 H 1.09000 * 109.47069 * 209.99946 * 13 12 2 34 34 H 1.09007 * 109.47430 * 329.99336 * 13 12 2 35 35 H 1.09004 * 109.47285 * 90.00202 * 18 17 14 36 36 H 1.08999 * 109.47096 * 209.99950 * 18 17 14 37 37 H 1.08999 * 109.47650 * 329.99831 * 18 17 14 38 38 H 1.08998 * 109.46983 * 214.12164 * 19 17 14 39 39 H 1.08995 * 109.47432 * 334.12766 * 19 17 14 40 40 H 1.07996 * 119.99393 * 0.02562 * 21 20 19 41 41 H 1.08001 * 119.99308 * 179.72391 * 24 22 21 42 42 H 1.07995 * 120.00815 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5839 -1.6337 1.1336 6 6 1.7879 -0.1813 2.4800 7 7 1.2421 1.0098 2.5945 8 14 2.2316 -1.1564 4.0102 9 1 1.7615 -0.4272 5.2155 10 1 1.5810 -2.4900 3.9534 11 1 3.7052 -1.3271 4.0784 12 7 2.0184 -0.6906 -1.1961 13 6 1.6191 -2.0758 -1.4565 14 16 3.0217 0.0947 -2.2540 15 8 2.8446 -0.5335 -3.5162 16 8 2.8188 1.4851 -2.0425 17 7 4.5770 -0.2276 -1.7854 18 6 5.1980 0.5594 -0.7172 19 6 5.3317 -1.2996 -2.4391 20 6 6.1519 -0.7227 -3.5641 21 6 5.6899 -0.7964 -4.8646 22 6 6.4404 -0.2626 -5.8968 23 17 5.8564 -0.3498 -7.5292 24 6 7.6589 0.3360 -5.6291 25 6 8.1241 0.4057 -4.3300 26 6 7.3708 -0.1239 -3.2957 27 9 7.8257 -0.0569 -2.0254 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.0034 1.3518 3.4703 32 1 0.7033 -2.0851 -2.0475 33 1 2.4110 -2.5852 -2.0055 34 1 1.4458 -2.5881 -0.5100 35 1 5.0034 0.0843 0.2444 36 1 6.2738 0.6137 -0.8843 37 1 4.7792 1.5657 -0.7166 38 1 5.9928 -1.7732 -1.7133 39 1 4.6391 -2.0409 -2.8375 40 1 4.7408 -1.2671 -5.0745 41 1 8.2465 0.7486 -6.4359 42 1 9.0753 0.8726 -4.1213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225754592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:37 Heat of formation + Delta-G solvation = -95.788713 kcal Electronic energy + Delta-G solvation = -29792.008745 eV Core-core repulsion = 25453.634023 eV Total energy + Delta-G solvation = -4338.374723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.081 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.16122 -39.50543 -36.86374 -36.70137 -36.16275 -35.94150 -35.25686 -32.59965 -31.87688 -30.47524 -29.19357 -27.32558 -25.59209 -25.15898 -24.75996 -23.05084 -21.84315 -20.75867 -18.50747 -17.89078 -17.28276 -17.02573 -16.67458 -16.58369 -16.30490 -16.13190 -15.49652 -14.87538 -14.61619 -14.25024 -14.03702 -13.73499 -13.52729 -13.44611 -13.32753 -13.15024 -12.71553 -12.70013 -12.28019 -12.02591 -11.99244 -11.80549 -11.61272 -11.57071 -11.49531 -11.24023 -11.16516 -11.08960 -11.04869 -10.99874 -10.87812 -10.47791 -10.30275 -10.07430 -9.42245 -9.35766 -8.88331 -8.72016 -8.46346 -8.00031 -6.13526 -4.19724 0.67077 0.82372 1.22211 1.88729 3.10104 3.23877 3.30766 3.31607 3.49534 3.95650 4.06367 4.33623 4.35244 4.44361 4.76770 4.83238 4.92958 5.01739 5.18034 5.33125 5.44452 5.51536 5.60897 5.65613 5.75166 5.90954 5.94589 6.03037 6.12499 6.19539 6.33281 6.36063 6.46054 6.57685 6.71496 6.77621 6.85498 7.04220 7.40788 7.58641 7.74203 7.91919 8.20600 8.83281 9.45834 10.93515 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003310 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.368324 B = 8456.169491 C = 9495.950623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.264 3.736 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.107 3.893 14 S 2.779 3.221 15 O -0.994 6.994 16 O -0.976 6.976 17 N -1.004 6.004 18 C 0.079 3.921 19 C 0.168 3.832 20 C -0.129 4.129 21 C -0.063 4.063 22 C -0.050 4.050 23 Cl -0.064 7.064 24 C -0.082 4.082 25 C -0.147 4.147 26 C 0.120 3.880 27 F -0.127 7.127 28 H 0.015 0.985 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.265 0.735 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.157 0.843 41 H 0.142 0.858 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.215 -4.520 -13.500 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.719 3.281 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.978 6.978 16 O -0.960 6.960 17 N -0.840 5.840 18 C -0.066 4.066 19 C 0.042 3.958 20 C -0.132 4.132 21 C -0.082 4.082 22 C -0.077 4.077 23 Cl -0.035 7.035 24 C -0.101 4.101 25 C -0.166 4.166 26 C 0.100 3.900 27 F -0.106 7.106 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.174 0.826 41 H 0.160 0.840 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.907 -3.805 -14.151 18.881 hybrid contribution 0.363 -0.704 1.389 1.599 sum 12.270 -4.509 -12.762 18.269 Atomic orbital electron populations 1.21968 0.98218 0.99549 1.00095 1.18768 0.91577 0.93279 0.80252 0.91678 1.21316 1.36331 1.08692 0.90371 0.91969 1.24909 0.95417 0.94340 0.98898 1.69942 1.42174 1.15552 1.24555 0.86677 0.78821 0.80148 0.82447 1.21265 1.20221 1.20303 1.57777 1.61884 1.23010 1.40529 1.21177 0.98674 0.82510 1.01546 1.02014 0.72400 0.73635 0.73091 1.93506 1.85674 1.78072 1.40577 1.93573 1.84763 1.31336 1.86341 1.58008 1.31581 1.45519 1.48927 1.21728 0.99126 0.95903 0.89863 1.19994 0.95262 0.88965 0.91628 1.20452 0.94809 1.01825 0.96160 1.21180 0.99935 0.97208 0.89893 1.20941 0.96216 1.03931 0.86598 1.98379 1.88507 1.97157 1.19415 1.20902 0.94358 0.98032 0.96758 1.21063 1.01414 1.02665 0.91495 1.17595 0.93442 0.99621 0.79329 1.91474 1.88536 1.94111 1.36429 0.96543 0.94574 0.90426 0.92525 0.93819 0.93371 0.90297 0.91303 0.90984 0.90305 0.88902 0.88508 0.82555 0.83991 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.99 37.16 0.33 -2.87 16 2 C 0.26 6.33 2.52 -69.08 -0.17 6.15 16 3 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 4 C -0.53 -13.17 8.03 -34.44 -0.28 -13.45 16 5 H 0.06 1.51 7.34 -52.49 -0.39 1.12 16 6 C 0.07 1.74 5.24 -17.82 -0.09 1.65 16 7 N -0.88 -24.06 12.02 55.43 0.67 -23.39 16 8 Si 0.89 19.98 29.55 -169.99 -5.02 14.96 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 12 N -0.99 -20.12 3.12 -115.85 -0.36 -20.48 16 13 C 0.11 1.83 9.19 59.84 0.55 2.38 16 14 S 2.78 54.39 6.02 -107.50 -0.65 53.74 16 15 O -0.99 -18.97 15.18 -57.17 -0.87 -19.84 16 16 O -0.98 -22.63 15.39 -57.17 -0.88 -23.51 16 17 N -1.00 -16.45 3.22 -123.05 -0.40 -16.85 16 18 C 0.08 1.28 10.70 59.85 0.64 1.92 16 19 C 0.17 2.21 5.23 -5.19 -0.03 2.19 16 20 C -0.13 -1.64 5.47 -104.56 -0.57 -2.21 16 21 C -0.06 -0.79 9.24 -39.56 -0.37 -1.15 16 22 C -0.05 -0.56 6.32 -39.50 -0.25 -0.81 16 23 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 24 C -0.08 -0.76 9.83 -39.56 -0.39 -1.15 16 25 C -0.15 -1.41 10.03 -39.52 -0.40 -1.81 16 26 C 0.12 1.42 7.18 -39.42 -0.28 1.13 16 27 F -0.13 -1.55 14.15 2.25 0.03 -1.52 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.77 7.61 -51.93 -0.40 0.37 16 30 H 0.08 1.94 6.78 -51.93 -0.35 1.58 16 31 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.69 7.84 -51.93 -0.41 0.28 16 34 H 0.08 1.36 7.12 -51.93 -0.37 0.99 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.01 5.34 -51.93 -0.28 0.73 16 37 H 0.08 1.40 7.10 -51.93 -0.37 1.03 16 38 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 39 H 0.10 1.17 7.32 -51.93 -0.38 0.79 16 40 H 0.16 2.03 7.41 -52.49 -0.39 1.64 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -29.81 374.23 -9.98 -39.78 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.33 Total: 1.67 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.30 Total: -8.03 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.09 Total: -60.72 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -1.75 Total: -43.35 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 54.39 SS G_CDS: -0.65 Total: 53.74 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.81 -9.98 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225754592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.008 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds