Wall clock time and date at job start Tue Mar 31 2020 06:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86794 * 120.00333 * 2 1 4 4 H 1.48499 * 109.47367 * 272.50711 * 3 2 1 5 5 H 1.48509 * 109.47087 * 32.50240 * 3 2 1 6 6 H 1.48497 * 109.47469 * 152.49900 * 3 2 1 7 7 C 1.39962 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99709 * 347.54754 * 7 2 1 9 9 C 1.41071 * 120.00229 * 167.54021 * 7 2 1 10 10 C 1.40734 * 120.30002 * 328.81041 * 9 7 2 11 11 C 1.36463 * 119.94244 * 180.29681 * 10 9 7 12 12 C 1.38862 * 120.57609 * 359.69525 * 11 10 9 13 13 C 1.38225 * 120.61781 * 0.03076 * 12 11 10 14 14 C 1.38647 * 120.03083 * 359.96928 * 13 12 11 15 15 N 1.39128 * 120.27997 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00223 * 34.22458 * 15 14 13 17 17 O 1.21282 * 119.99924 * 355.25801 * 16 15 14 18 18 C 1.50696 * 120.00081 * 175.26372 * 16 15 14 19 19 C 1.53005 * 109.46983 * 179.97438 * 18 16 15 20 20 N 1.46506 * 109.46827 * 179.97438 * 19 18 16 21 21 C 1.34518 * 124.45731 * 269.97328 * 20 19 18 22 22 O 1.21446 * 125.71769 * 0.04903 * 21 20 19 23 23 C 1.47815 * 108.57669 * 180.02562 * 21 20 19 24 24 C 1.38569 * 134.29557 * 180.02562 * 23 21 20 25 25 C 1.38613 * 119.72215 * 180.21564 * 24 23 21 26 26 C 1.38227 * 120.45450 * 359.51317 * 25 24 23 27 27 C 1.38616 * 120.46004 * 0.47991 * 26 25 24 28 28 C 1.38566 * 119.72102 * 359.76775 * 27 26 25 29 29 C 1.34522 * 124.45704 * 89.99993 * 20 19 18 30 30 O 1.21446 * 125.71573 * 0.02562 * 29 20 19 31 31 H 0.96995 * 119.99880 * 359.97438 * 1 2 3 32 32 H 1.08005 * 120.02907 * 0.02562 * 10 9 7 33 33 H 1.07998 * 119.71101 * 179.72338 * 11 10 9 34 34 H 1.08005 * 119.69384 * 180.02562 * 12 11 10 35 35 H 1.08002 * 119.98327 * 180.02562 * 13 12 11 36 36 H 0.96998 * 119.99295 * 214.21585 * 15 14 13 37 37 H 1.08998 * 109.47143 * 59.99631 * 18 16 15 38 38 H 1.09002 * 109.46850 * 299.99069 * 18 16 15 39 39 H 1.08998 * 109.47138 * 60.00049 * 19 18 16 40 40 H 1.08993 * 109.47073 * 299.99656 * 19 18 16 41 41 H 1.08001 * 120.13993 * 359.94366 * 24 23 21 42 42 H 1.08000 * 119.77400 * 179.72725 * 25 24 23 43 43 H 1.08002 * 119.77331 * 180.24685 * 26 25 24 44 44 H 1.08006 * 120.13683 * 179.74358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4371 2.0770 -1.3987 5 1 1.4675 2.6368 0.7524 6 1 3.5656 1.4254 0.6465 7 6 2.0083 -1.2121 0.0005 8 1 1.4873 -2.1363 0.2026 9 6 3.3941 -1.2267 -0.2630 10 6 3.9635 -0.2689 -1.1227 11 6 5.3039 -0.2934 -1.3774 12 6 6.1171 -1.2537 -0.7899 13 6 5.5836 -2.2020 0.0625 14 6 4.2249 -2.2005 0.3390 15 7 3.6825 -3.1523 1.1967 16 6 4.3994 -3.5999 2.2465 17 8 5.5475 -3.2385 2.3951 18 6 3.7744 -4.5496 3.2357 19 6 4.7946 -4.8998 4.3209 20 7 4.1867 -5.8226 5.2829 21 6 3.5226 -5.4408 6.3887 22 8 3.3340 -4.2943 6.7420 23 6 3.0603 -6.6503 7.1015 24 6 2.3450 -6.8724 8.2674 25 6 2.0744 -8.1706 8.6708 26 6 2.5045 -9.2438 7.9132 27 6 3.2209 -9.0369 6.7447 28 6 3.5031 -7.7447 6.3316 29 6 4.2197 -7.1632 5.1769 30 8 4.7502 -7.7908 4.2827 31 1 -0.4850 0.8400 0.0004 32 1 3.3394 0.4823 -1.5840 33 1 5.7362 0.4406 -2.0412 34 1 7.1762 -1.2597 -1.0011 35 1 6.2255 -2.9439 0.5141 36 1 2.7884 -3.4936 1.0390 37 1 3.4655 -5.4592 2.7207 38 1 2.9048 -4.0776 3.6928 39 1 5.1038 -3.9903 4.8360 40 1 5.6640 -5.3719 3.8635 41 1 2.0035 -6.0376 8.8614 42 1 1.5208 -8.3448 9.5816 43 1 2.2841 -10.2507 8.2359 44 1 3.5580 -9.8793 6.1589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225795853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:15 Heat of formation + Delta-G solvation = -26.272669 kcal Electronic energy + Delta-G solvation = -30871.499920 eV Core-core repulsion = 26526.588843 eV Total energy + Delta-G solvation = -4344.911077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.61701 -39.79080 -38.87989 -38.86705 -37.55048 -36.14671 -33.97019 -33.66784 -33.43394 -31.61646 -30.68119 -30.46951 -28.60377 -25.82512 -25.44381 -24.92579 -23.02506 -22.55338 -21.95497 -20.66882 -20.10478 -19.59974 -18.14999 -17.70563 -17.47064 -17.24442 -16.78107 -16.56398 -15.98431 -15.69957 -15.32885 -15.14060 -14.97400 -14.73406 -14.48364 -14.23453 -14.12528 -13.78530 -13.74606 -13.28161 -13.22684 -12.90286 -12.80634 -12.55661 -12.40858 -12.12765 -12.11056 -11.71634 -11.33192 -11.12209 -10.89784 -10.84144 -10.57337 -10.45800 -10.15141 -10.04246 -9.86249 -9.70980 -9.69244 -9.40485 -9.40173 -8.89178 -7.66008 -7.16988 -6.98705 -4.52740 -0.34053 0.48906 1.63861 2.01702 2.37790 2.64084 2.64353 3.07376 3.12717 3.14057 3.24500 3.26548 3.31474 3.78735 3.95314 3.97024 4.13512 4.37843 4.50996 4.57266 4.72453 4.73251 4.78887 4.94718 5.02840 5.25524 5.29220 5.32371 5.42989 5.48247 5.58187 5.61528 5.69695 5.83178 6.05687 6.08924 6.13343 6.33257 6.42310 6.60524 6.71084 6.91769 6.95547 7.14244 7.33791 7.37898 7.46443 7.66189 7.79279 7.94183 8.18327 8.23613 8.54430 8.68624 8.83164 10.03430 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.014607 B = 0.002216 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.387073 B =12630.253299 C =13718.034565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.449 4.449 8 H 0.088 0.912 9 C 0.085 3.915 10 C -0.226 4.226 11 C -0.086 4.086 12 C -0.227 4.227 13 C -0.076 4.076 14 C 0.029 3.971 15 N -0.635 5.635 16 C 0.510 3.490 17 O -0.540 6.540 18 C -0.158 4.158 19 C 0.129 3.871 20 N -0.575 5.575 21 C 0.571 3.429 22 O -0.454 6.454 23 C -0.137 4.137 24 C -0.046 4.046 25 C -0.097 4.097 26 C -0.098 4.098 27 C -0.046 4.046 28 C -0.139 4.139 29 C 0.573 3.427 30 O -0.458 6.458 31 H 0.286 0.714 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.406 0.594 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.323 -17.092 16.355 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.478 4.478 8 H 0.106 0.894 9 C 0.081 3.919 10 C -0.246 4.246 11 C -0.105 4.105 12 C -0.247 4.247 13 C -0.096 4.096 14 C -0.065 4.065 15 N -0.277 5.277 16 C 0.296 3.704 17 O -0.419 6.419 18 C -0.199 4.199 19 C 0.009 3.991 20 N -0.317 5.317 21 C 0.359 3.641 22 O -0.324 6.324 23 C -0.141 4.141 24 C -0.064 4.064 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.065 4.065 28 C -0.142 4.142 29 C 0.362 3.638 30 O -0.329 6.329 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.241 0.759 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.059 -16.406 16.146 23.111 hybrid contribution -0.418 0.717 -0.206 0.855 sum 1.641 -15.689 15.940 22.426 Atomic orbital electron populations 1.69646 1.07903 1.30277 1.35946 1.26075 0.94800 1.01589 0.90908 0.86299 0.81086 0.79621 0.78953 1.19660 1.22079 1.16606 1.19184 0.91097 0.95483 1.42076 0.89408 1.17554 0.93297 0.90134 0.90955 1.20634 0.95161 1.04068 1.04694 1.20386 0.93891 0.97587 0.98627 1.20343 0.98071 1.00562 1.05729 1.20813 0.93726 0.98598 0.96477 1.17586 0.92367 0.96941 0.99596 1.42831 1.19069 1.40209 1.25604 1.20093 0.86695 0.82026 0.81549 1.90661 1.17290 1.58777 1.75161 1.21944 1.00519 1.00686 0.96762 1.21517 0.95501 0.93557 0.88515 1.46641 1.51916 1.08634 1.24528 1.18402 0.76920 0.88592 0.80144 1.90852 1.52575 1.21141 1.67822 1.20611 1.02191 0.93620 0.97666 1.20840 0.94185 0.98001 0.93414 1.21481 0.98399 0.91685 0.99938 1.21477 0.96234 1.00090 0.93779 1.20824 0.95061 0.95004 0.95569 1.20607 1.01932 0.95039 0.96644 1.18389 0.78678 0.81639 0.85144 1.90830 1.41345 1.65043 1.35680 0.90406 0.87880 0.88758 0.88490 0.86506 0.75863 0.88437 0.88081 0.87405 0.87480 0.83935 0.84049 0.84064 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.19 13.93 55.55 0.77 -20.42 16 2 C 0.08 2.17 5.47 -17.32 -0.09 2.08 16 3 Si 0.91 20.99 24.40 -169.99 -4.15 16.84 16 4 H -0.27 -5.99 6.66 56.52 0.38 -5.61 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.84 6.69 56.52 0.38 -5.46 16 7 C -0.45 -11.56 9.13 -37.86 -0.35 -11.91 16 8 H 0.09 2.26 7.08 -52.49 -0.37 1.89 16 9 C 0.08 2.11 5.14 -106.65 -0.55 1.56 16 10 C -0.23 -5.43 6.95 -39.28 -0.27 -5.70 16 11 C -0.09 -1.90 9.97 -39.99 -0.40 -2.30 16 12 C -0.23 -4.95 10.04 -39.36 -0.39 -5.34 16 13 C -0.08 -1.73 8.70 -39.44 -0.34 -2.07 16 14 C 0.03 0.67 6.35 -83.17 -0.53 0.14 16 15 N -0.64 -12.62 5.03 -9.48 -0.05 -12.67 16 16 C 0.51 9.36 7.67 -10.99 -0.08 9.27 16 17 O -0.54 -11.36 13.36 5.56 0.07 -11.29 16 18 C -0.16 -2.20 6.03 -27.88 -0.17 -2.37 16 19 C 0.13 1.72 5.03 -4.04 -0.02 1.70 16 20 N -0.58 -7.04 2.62 -117.61 -0.31 -7.35 16 21 C 0.57 6.99 8.02 -12.46 -0.10 6.89 16 22 O -0.45 -6.78 17.68 5.41 0.10 -6.68 16 23 C -0.14 -1.29 6.40 -104.83 -0.67 -1.96 16 24 C -0.05 -0.30 10.09 -39.32 -0.40 -0.70 16 25 C -0.10 -0.41 10.04 -39.45 -0.40 -0.81 16 26 C -0.10 -0.40 10.04 -39.45 -0.40 -0.80 16 27 C -0.05 -0.29 10.09 -39.32 -0.40 -0.69 16 28 C -0.14 -1.28 6.41 -104.83 -0.67 -1.95 16 29 C 0.57 6.78 8.02 -12.45 -0.10 6.68 16 30 O -0.46 -6.46 17.68 5.41 0.10 -6.36 16 31 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 32 H 0.10 2.45 4.42 -52.48 -0.23 2.22 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.12 2.60 6.15 -52.49 -0.32 2.28 16 36 H 0.41 7.30 7.58 -40.82 -0.31 6.99 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.11 1.52 7.92 -51.93 -0.41 1.10 16 40 H 0.11 1.44 7.92 -51.93 -0.41 1.03 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 43 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 44 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -32.35 378.74 -8.71 -41.06 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.62 Total: 9.43 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -6.33 Total: -8.26 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.42 Total: -40.44 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.27 Total: -24.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.15 Total: 16.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.35 -8.71 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225795853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds