Wall clock time and date at job start Tue Mar 31 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30957 * 1 3 3 Si 1.86795 * 120.00056 * 2 1 4 4 H 1.48506 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47057 * 299.99754 * 3 2 1 6 6 H 1.48499 * 109.47259 * 60.00274 * 3 2 1 7 7 C 1.39511 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99872 * 180.02562 * 7 2 1 9 9 N 1.36361 * 119.99919 * 359.97438 * 7 2 1 10 10 N 1.28179 * 119.00304 * 0.02562 * 9 7 2 11 11 C 1.31394 * 123.49859 * 179.97438 * 10 9 7 12 12 C 1.48277 * 119.54101 * 179.97438 * 11 10 9 13 13 C 1.39455 * 120.12098 * 0.02562 * 12 11 10 14 14 C 1.37976 * 119.88834 * 179.72178 * 13 12 11 15 15 C 1.38346 * 120.13857 * 359.97438 * 14 13 12 16 16 C 1.38407 * 120.25291 * 0.02562 * 15 14 13 17 17 Br 1.89104 * 119.94872 * 180.02562 * 16 15 14 18 18 C 1.38111 * 120.10570 * 0.02562 * 16 15 14 19 19 C 1.40997 * 120.91805 * 0.26059 * 11 10 9 20 20 C 1.39489 * 117.85343 * 359.47636 * 19 11 10 21 21 C 1.47230 * 121.48292 * 180.25099 * 20 19 11 22 22 O 1.21530 * 119.99941 * 0.26077 * 21 20 19 23 23 O 1.34792 * 119.99723 * 180.26069 * 21 20 19 24 24 C 1.34747 * 119.00465 * 179.97438 * 9 7 2 25 25 O 1.21821 * 120.64894 * 359.97438 * 24 9 7 26 26 H 0.96997 * 120.00295 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.05298 * 359.69398 * 13 12 11 28 28 H 1.08003 * 119.92877 * 179.97438 * 14 13 12 29 29 H 1.08001 * 119.87579 * 180.02562 * 15 14 13 30 30 H 1.08005 * 120.07034 * 180.02562 * 18 16 15 31 31 H 1.07994 * 121.07073 * 179.74214 * 19 11 10 32 32 H 0.96701 * 116.99642 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 3.7036 1.3463 -0.0006 5 1 1.8848 2.3964 -1.2126 6 1 1.8849 2.3964 1.2125 7 6 2.0071 -1.2082 -0.0005 8 1 3.0871 -1.2082 -0.0001 9 7 1.3253 -2.3891 -0.0005 10 7 0.0437 -2.3668 -0.0005 11 6 -0.7005 -3.4497 -0.0010 12 6 -2.1777 -3.3216 -0.0004 13 6 -2.7707 -2.0594 0.0002 14 6 -4.1458 -1.9457 -0.0051 15 6 -4.9366 -3.0809 -0.0114 16 6 -4.3542 -4.3365 -0.0120 17 35 -5.4433 -5.8823 -0.0214 18 6 -2.9788 -4.4621 -0.0057 19 6 -0.1139 -4.7318 0.0039 20 6 1.2787 -4.8114 -0.0020 21 6 1.9747 -6.1088 -0.0029 22 8 1.3345 -7.1418 -0.0034 23 8 3.3220 -6.1508 -0.0034 24 6 2.0191 -3.5442 -0.0016 25 8 3.2373 -3.5369 -0.0030 26 1 -0.4850 0.8400 -0.0004 27 1 -2.1547 -1.1724 0.0051 28 1 -4.6057 -0.9685 -0.0042 29 1 -6.0125 -2.9870 -0.0159 30 1 -2.5249 -5.4422 -0.0066 31 1 -0.7232 -5.6235 0.0077 32 1 3.7339 -7.0257 -0.0044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225963391.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:56 Heat of formation + Delta-G solvation = -25.126964 kcal Electronic energy + Delta-G solvation = -23653.800231 eV Core-core repulsion = 19820.412111 eV Total energy + Delta-G solvation = -3833.388120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 363.989 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95723 -39.13901 -38.81401 -36.58338 -35.37528 -34.86596 -32.83031 -32.05603 -30.97464 -29.81958 -28.63105 -26.61743 -25.17994 -23.43381 -22.25075 -21.63594 -20.70141 -18.98609 -17.83536 -17.03438 -16.40991 -16.08050 -15.73482 -15.49222 -15.45404 -14.70348 -14.60193 -14.33881 -14.25475 -13.50141 -13.09285 -13.08518 -12.60456 -12.36854 -12.17712 -12.04994 -11.62961 -11.60907 -11.12308 -10.92802 -10.85832 -10.79468 -10.76671 -10.28475 -10.15953 -10.07844 -9.95985 -9.38188 -8.68525 -8.59042 -8.43418 -7.50257 -7.22148 -4.92820 1.16947 1.30274 1.52872 1.80800 2.66049 2.73453 2.80197 2.84721 3.24146 3.29575 3.73379 3.91506 3.97709 4.17431 4.79655 4.85073 5.11159 5.24023 5.43463 5.68489 5.74546 5.76194 5.92127 6.08069 6.13006 6.41258 6.43338 6.49274 6.69332 6.77665 6.85640 7.01472 7.13086 7.24504 7.29656 7.53691 8.01338 8.65413 8.79669 9.47957 9.55446 Molecular weight = 363.99amu Principal moments of inertia in cm(-1) A = 0.009993 B = 0.003884 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.325721 B = 7206.822609 C = 9998.282246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.034 3.966 3 Si 0.951 3.049 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.149 0.851 9 N -0.103 5.103 10 N -0.189 5.189 11 C -0.025 4.025 12 C 0.026 3.974 13 C -0.084 4.084 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.087 4.087 17 Br -0.068 7.068 18 C -0.100 4.100 19 C -0.024 4.024 20 C -0.309 4.309 21 C 0.555 3.445 22 O -0.551 6.551 23 O -0.495 6.495 24 C 0.452 3.548 25 O -0.527 6.527 26 H 0.288 0.712 27 H 0.161 0.839 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -0.283 -0.005 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.385 4.385 8 H 0.166 0.834 9 N 0.095 4.905 10 N -0.037 5.037 11 C -0.161 4.161 12 C 0.023 3.977 13 C -0.102 4.102 14 C -0.137 4.137 15 C -0.131 4.131 16 C -0.166 4.166 17 Br 0.017 6.983 18 C -0.121 4.121 19 C -0.051 4.051 20 C -0.321 4.321 21 C 0.404 3.596 22 O -0.446 6.446 23 O -0.303 6.303 24 C 0.257 3.743 25 O -0.407 6.407 26 H 0.100 0.900 27 H 0.179 0.821 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.754 -0.021 -0.009 9.754 hybrid contribution 0.803 -0.580 0.005 0.990 sum -8.952 -0.601 -0.004 8.972 Atomic orbital electron populations 1.70057 1.07033 1.29759 1.26778 1.26039 0.95943 1.01375 0.95470 0.85441 0.80337 0.77747 0.79246 1.17607 1.18996 1.18993 1.21283 0.94722 0.80351 1.42130 0.83351 1.43144 1.02856 1.08133 1.36393 1.71950 0.90871 1.25979 1.14911 1.19305 0.92547 0.88159 1.16122 1.18062 0.89412 0.92686 0.97551 1.21873 0.94439 0.98856 0.95069 1.21100 0.93815 0.97838 1.00909 1.20992 0.99805 0.90869 1.01472 1.21432 0.93657 0.91592 1.09917 1.96631 1.67538 1.36224 1.97944 1.21073 0.91206 0.99084 1.00764 1.22096 0.92668 0.97570 0.92724 1.20286 0.92691 0.89742 1.29339 1.20008 0.79865 0.88396 0.71353 1.90795 1.67727 1.35419 1.50623 1.84881 1.21748 1.37842 1.85809 1.19184 0.88558 0.84471 0.82130 1.90783 1.12110 1.86202 1.51597 0.90012 0.82142 0.85548 0.85840 0.85096 0.84944 0.74964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -14.49 10.11 55.52 0.56 -13.93 16 2 C 0.03 0.69 5.48 -17.45 -0.10 0.59 16 3 Si 0.95 15.10 29.55 -169.99 -5.02 10.08 16 4 H -0.25 -4.04 7.11 56.52 0.40 -3.64 16 5 H -0.27 -4.15 7.11 56.52 0.40 -3.75 16 6 H -0.27 -4.15 7.11 56.52 0.40 -3.75 16 7 C -0.24 -5.48 9.58 -15.06 -0.14 -5.62 16 8 H 0.15 3.30 7.10 -52.49 -0.37 2.93 16 9 N -0.10 -2.50 3.34 -12.13 -0.04 -2.54 16 10 N -0.19 -4.37 7.14 33.39 0.24 -4.13 16 11 C -0.03 -0.54 6.81 -82.88 -0.56 -1.11 16 12 C 0.03 0.48 5.88 -104.89 -0.62 -0.13 16 13 C -0.08 -1.44 9.57 -39.22 -0.38 -1.81 16 14 C -0.12 -1.67 10.03 -39.64 -0.40 -2.06 16 15 C -0.11 -1.52 9.78 -39.48 -0.39 -1.91 16 16 C -0.09 -1.30 6.22 -39.57 -0.25 -1.54 16 17 Br -0.07 -0.90 33.70 -68.01 -2.29 -3.19 16 18 C -0.10 -1.67 9.16 -39.20 -0.36 -2.03 16 19 C -0.02 -0.50 9.12 -38.07 -0.35 -0.85 16 20 C -0.31 -7.17 6.10 -102.33 -0.62 -7.79 16 21 C 0.55 12.16 8.29 34.38 0.29 12.44 16 22 O -0.55 -12.37 17.28 -19.29 -0.33 -12.71 16 23 O -0.49 -9.69 11.89 -47.44 -0.56 -10.25 16 24 C 0.45 11.27 7.61 -12.83 -0.10 11.17 16 25 O -0.53 -13.89 15.09 -14.62 -0.22 -14.11 16 26 H 0.29 5.14 8.30 -40.82 -0.34 4.80 16 27 H 0.16 2.96 6.26 -52.49 -0.33 2.63 16 28 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 2.10 6.19 -52.48 -0.32 1.78 16 31 H 0.13 2.56 5.99 -52.49 -0.31 2.25 16 32 H 0.40 5.27 9.11 45.56 0.42 5.68 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -27.96 312.13 -7.84 -35.80 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.90 Total: 10.93 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.97 Total: -0.66 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.76 Total: -20.60 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.12 Total: -37.07 kcal Atomic # 14 Polarization: 15.10 SS G_CDS: -5.02 Total: 10.08 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -2.29 Total: -3.19 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.96 -7.84 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225963391.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.677 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds