Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35911 * 117.00179 * 2 1 4 4 C 1.38754 * 120.04326 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.95101 * 179.97438 * 4 3 2 6 6 C 1.38364 * 120.04849 * 359.97438 * 5 4 3 7 7 Br 1.89101 * 119.95462 * 179.97438 * 6 5 4 8 8 C 1.38318 * 120.09005 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.97745 * 179.97438 * 8 6 5 10 10 S 1.81398 * 109.47101 * 89.99878 * 9 8 6 11 11 O 1.42099 * 110.54524 * 291.62473 * 10 9 8 12 12 O 1.42104 * 110.54426 * 68.37920 * 10 9 8 13 13 N 1.65602 * 104.45385 * 180.02562 * 10 9 8 14 14 C 1.46500 * 120.00019 * 89.99636 * 13 10 9 15 15 C 1.36937 * 120.00141 * 270.00587 * 13 10 9 16 16 H 1.08003 * 119.99795 * 324.14919 * 15 13 10 17 17 C 1.38811 * 120.00227 * 144.15150 * 15 13 10 18 18 N 1.31613 * 119.99868 * 157.93410 * 17 15 13 19 19 Si 1.86797 * 119.99956 * 337.93773 * 17 15 13 20 20 H 1.48504 * 109.47242 * 95.58781 * 19 17 15 21 21 H 1.48504 * 109.47385 * 215.58839 * 19 17 15 22 22 H 1.48499 * 109.47299 * 335.58793 * 19 17 15 23 23 C 1.38161 * 120.04988 * 359.72478 * 8 6 5 24 24 H 1.09000 * 109.47196 * 60.00108 * 1 2 3 25 25 H 1.09007 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47344 * 299.99562 * 1 2 3 27 27 H 1.07993 * 120.02325 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.97571 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47640 * 210.00215 * 9 8 6 30 30 H 1.09009 * 109.47023 * 330.00372 * 9 8 6 31 31 H 1.08999 * 109.46512 * 87.47371 * 14 13 10 32 32 H 1.08992 * 109.47433 * 207.47485 * 14 13 10 33 33 H 1.08998 * 109.47067 * 327.47869 * 14 13 10 34 34 H 0.96999 * 120.00089 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.03050 * 180.29667 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9203 3.6048 0.0011 6 6 3.3021 3.6761 0.0016 7 35 4.1607 5.3611 0.0016 8 6 4.0564 2.5167 0.0011 9 6 5.5612 2.5973 0.0011 10 16 6.1650 2.6290 1.7113 11 8 5.8032 3.8480 2.3455 12 8 5.9356 1.3776 2.3444 13 7 7.8123 2.7180 1.5665 14 6 8.4725 4.0243 1.5031 15 6 8.5574 1.5707 1.5058 16 1 8.2663 0.7066 2.0848 17 6 9.6866 1.5181 0.7003 18 7 10.6290 0.6326 0.9451 19 14 9.8687 2.7043 -0.7312 20 1 10.6770 3.8748 -0.3044 21 1 10.5485 2.0182 -1.8593 22 1 8.5256 3.1631 -1.1679 23 6 3.4312 1.2847 0.0057 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2128 2.3200 0.0014 28 1 1.3332 4.5113 0.0011 29 1 5.9717 1.7284 -0.5132 30 1 5.8764 3.5058 -0.5123 31 1 8.6857 4.3730 2.5136 32 1 9.4048 3.9335 0.9458 33 1 7.8182 4.7382 1.0028 34 1 11.4179 0.5956 0.3820 35 1 4.0204 0.3796 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000241277611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = -59.994230 kcal Electronic energy + Delta-G solvation = -22873.210471 eV Core-core repulsion = 19239.180255 eV Total energy + Delta-G solvation = -3634.030216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 362.997 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23753 -37.78711 -35.91611 -35.72662 -34.52664 -32.65644 -32.24262 -31.77426 -29.34281 -27.24913 -26.68851 -26.59383 -23.97871 -22.56095 -21.23802 -18.44129 -17.79684 -17.21804 -16.68814 -16.54163 -15.88411 -15.79166 -15.59825 -15.29843 -14.57074 -14.21623 -13.88779 -13.48802 -13.21115 -12.97799 -12.87234 -12.85724 -12.27113 -12.22095 -11.94215 -11.73012 -11.61801 -11.08924 -11.01042 -10.88921 -10.78540 -10.65115 -10.35949 -10.32738 -10.19976 -10.06472 -9.85661 -9.21031 -8.75323 -8.23070 -8.05461 -6.85179 -4.21511 0.97604 1.22027 1.61407 1.85543 2.90659 3.06687 3.07411 3.11868 3.58881 3.83464 3.91647 4.51077 4.62239 4.67812 4.88864 4.95962 4.98391 5.06341 5.25380 5.27316 5.33001 5.43668 5.77807 5.81642 5.90312 6.00093 6.11814 6.14229 6.21894 6.37060 6.42785 6.59495 6.83450 7.24775 7.25365 8.10623 8.67541 8.78862 10.20250 Molecular weight = 363.00amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.004926 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.060821 B = 5682.754236 C = 6961.574394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.146 3.854 4 C -0.216 4.216 5 C -0.048 4.048 6 C -0.131 4.131 7 Br -0.040 7.040 8 C 0.009 3.991 9 C -0.636 4.636 10 S 2.462 3.538 11 O -0.980 6.980 12 O -0.968 6.968 13 N -0.823 5.823 14 C 0.089 3.911 15 C -0.241 4.241 16 H 0.128 0.872 17 C 0.060 3.940 18 N -0.813 5.813 19 Si 0.884 3.116 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.256 1.256 23 C -0.145 4.145 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.285 0.715 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.320 5.617 -6.231 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.100 3.900 4 C -0.236 4.236 5 C -0.068 4.068 6 C -0.211 4.211 7 Br 0.046 6.954 8 C 0.005 3.995 9 C -0.750 4.750 10 S 2.562 3.438 11 O -0.970 6.970 12 O -0.958 6.958 13 N -0.647 5.647 14 C -0.057 4.057 15 C -0.391 4.391 16 H 0.145 0.855 17 C -0.157 4.157 18 N -0.449 5.449 19 Si 0.710 3.290 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.165 4.165 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.566 6.103 -5.513 16.727 hybrid contribution -0.215 0.213 -1.658 1.685 sum -14.780 6.316 -7.171 17.600 Atomic orbital electron populations 1.23092 0.78382 1.04062 1.01397 1.86117 1.21388 1.26630 1.88321 1.19006 0.92083 0.84268 0.94666 1.21148 1.00103 0.91724 1.10610 1.20804 0.92077 0.97924 0.95971 1.21642 0.94891 0.91561 1.13001 1.96660 1.79946 1.21164 1.97637 1.18925 0.93929 0.91236 0.95405 1.30542 0.97778 1.10669 1.35988 1.14723 0.75037 0.73982 0.80101 1.93386 1.83248 1.46054 1.74269 1.93381 1.84748 1.44205 1.73428 1.54120 1.21076 1.09338 1.80166 1.21591 0.97644 0.84236 1.02193 1.19594 1.03819 0.93955 1.21708 0.85519 1.25913 0.95717 0.96651 0.97402 1.69830 1.06546 1.32595 1.35945 0.86825 0.80059 0.80473 0.81635 1.19200 1.20903 1.17956 1.20400 0.91621 0.98198 1.06296 0.92612 0.88105 0.92467 0.84676 0.84647 0.84918 0.85500 0.91733 0.92662 0.92224 0.90453 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.24 10.50 -19.46 -0.20 -4.45 16 3 C 0.15 2.21 6.69 -39.22 -0.26 1.95 16 4 C -0.22 -2.81 9.04 -39.44 -0.36 -3.16 16 5 C -0.05 -0.67 9.78 -39.58 -0.39 -1.06 16 6 C -0.13 -2.23 6.22 -39.51 -0.25 -2.47 16 7 Br -0.04 -0.65 31.08 -68.01 -2.11 -2.77 16 8 C 0.01 0.16 5.14 -104.62 -0.54 -0.38 16 9 C -0.64 -12.47 5.84 36.01 0.21 -12.26 16 10 S 2.46 56.89 5.33 -107.50 -0.57 56.32 16 11 O -0.98 -23.28 16.44 -57.54 -0.95 -24.22 16 12 O -0.97 -25.38 16.88 -57.54 -0.97 -26.36 16 13 N -0.82 -19.10 2.83 -66.69 -0.19 -19.28 16 14 C 0.09 1.80 8.88 59.85 0.53 2.33 16 15 C -0.24 -6.08 9.56 -15.06 -0.14 -6.22 16 16 H 0.13 3.51 7.49 -52.48 -0.39 3.11 16 17 C 0.06 1.46 5.31 -17.43 -0.09 1.37 16 18 N -0.81 -20.55 13.97 55.49 0.78 -19.78 16 19 Si 0.88 18.24 24.93 -169.99 -4.24 14.01 16 20 H -0.27 -5.18 6.68 56.52 0.38 -4.81 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 23 C -0.15 -2.55 9.64 -39.44 -0.38 -2.93 16 24 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 27 H 0.14 1.27 6.30 -52.49 -0.33 0.94 16 28 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 2.46 8.09 -51.93 -0.42 2.04 16 30 H 0.13 2.35 6.64 -51.92 -0.34 2.00 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.09 3.14 -51.93 -0.16 0.92 16 33 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 34 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.15 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -30.10 324.31 -7.95 -38.05 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.71 Total: 5.23 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.67 Total: -21.63 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.59 Total: -39.06 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -2.12 Total: -55.02 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.24 Total: 14.01 kcal Atomic # 16 Polarization: 56.89 SS G_CDS: -0.57 Total: 56.32 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.11 Total: -2.77 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.10 -7.95 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241277611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.945 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds