Wall clock time and date at job start Tue Mar 31 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35911 * 117.00179 * 2 1 4 4 C 1.38754 * 120.04326 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.95101 * 179.97438 * 4 3 2 6 6 C 1.38364 * 120.04849 * 359.97438 * 5 4 3 7 7 Br 1.89101 * 119.95462 * 179.97438 * 6 5 4 8 8 C 1.38318 * 120.09005 * 0.02562 * 6 5 4 9 9 C 1.50700 * 119.97745 * 179.97438 * 8 6 5 10 10 S 1.81398 * 109.47101 * 89.99878 * 9 8 6 11 11 O 1.42099 * 110.54524 * 291.62473 * 10 9 8 12 12 O 1.42104 * 110.54426 * 68.37920 * 10 9 8 13 13 N 1.65602 * 104.45385 * 180.02562 * 10 9 8 14 14 C 1.46500 * 120.00019 * 89.99636 * 13 10 9 15 15 C 1.36937 * 120.00141 * 270.00587 * 13 10 9 16 16 H 1.08003 * 119.99795 * 324.14919 * 15 13 10 17 17 C 1.38811 * 120.00227 * 144.15150 * 15 13 10 18 18 N 1.31613 * 119.99868 * 157.93410 * 17 15 13 19 19 Si 1.86797 * 119.99956 * 337.93773 * 17 15 13 20 20 H 1.48504 * 109.47242 * 95.58781 * 19 17 15 21 21 H 1.48504 * 109.47385 * 215.58839 * 19 17 15 22 22 H 1.48499 * 109.47299 * 335.58793 * 19 17 15 23 23 C 1.38161 * 120.04988 * 359.72478 * 8 6 5 24 24 H 1.09000 * 109.47196 * 60.00108 * 1 2 3 25 25 H 1.09007 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47344 * 299.99562 * 1 2 3 27 27 H 1.07993 * 120.02325 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.97571 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47640 * 210.00215 * 9 8 6 30 30 H 1.09009 * 109.47023 * 330.00372 * 9 8 6 31 31 H 1.08999 * 109.46512 * 87.47371 * 14 13 10 32 32 H 1.08992 * 109.47433 * 207.47485 * 14 13 10 33 33 H 1.08998 * 109.47067 * 327.47869 * 14 13 10 34 34 H 0.96999 * 120.00089 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.03050 * 180.29667 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3752 0.0005 5 6 1.9203 3.6048 0.0011 6 6 3.3021 3.6761 0.0016 7 35 4.1607 5.3611 0.0016 8 6 4.0564 2.5167 0.0011 9 6 5.5612 2.5973 0.0011 10 16 6.1650 2.6290 1.7113 11 8 5.8032 3.8480 2.3455 12 8 5.9356 1.3776 2.3444 13 7 7.8123 2.7180 1.5665 14 6 8.4725 4.0243 1.5031 15 6 8.5574 1.5707 1.5058 16 1 8.2663 0.7066 2.0848 17 6 9.6866 1.5181 0.7003 18 7 10.6290 0.6326 0.9451 19 14 9.8687 2.7043 -0.7312 20 1 10.6770 3.8748 -0.3044 21 1 10.5485 2.0182 -1.8593 22 1 8.5256 3.1631 -1.1679 23 6 3.4312 1.2847 0.0057 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2128 2.3200 0.0014 28 1 1.3332 4.5113 0.0011 29 1 5.9717 1.7284 -0.5132 30 1 5.8764 3.5058 -0.5123 31 1 8.6857 4.3730 2.5136 32 1 9.4048 3.9335 0.9458 33 1 7.8182 4.7382 1.0028 34 1 11.4179 0.5956 0.3820 35 1 4.0204 0.3796 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000241277611.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:40 Heat of formation + Delta-G solvation = -81.354175 kcal Electronic energy + Delta-G solvation = -22874.136708 eV Core-core repulsion = 19239.180255 eV Total energy + Delta-G solvation = -3634.956453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 362.997 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34202 -38.90106 -37.76496 -37.66484 -36.56772 -34.02702 -33.96208 -32.98714 -30.49767 -28.35446 -28.28953 -27.82021 -25.79785 -23.76987 -22.43003 -20.21390 -19.11250 -18.98176 -18.51616 -17.70951 -17.29204 -17.14241 -16.95484 -16.71439 -16.25100 -15.52000 -15.09317 -15.00954 -14.63621 -14.59089 -14.50262 -14.13682 -13.95710 -13.56121 -13.07208 -12.95637 -12.90995 -12.79976 -12.67760 -12.55640 -12.48230 -12.17280 -12.14118 -11.95649 -11.78164 -11.29201 -11.14695 -10.92246 -10.22036 -9.88203 -9.26464 -8.62386 -6.14568 -0.61404 0.01968 0.14859 0.59220 1.27735 1.39457 1.48555 2.04477 2.17315 2.20668 2.38716 2.72006 3.12387 3.37463 3.43616 3.61444 3.90370 4.02369 4.09546 4.23428 4.31076 4.36374 4.40215 4.53655 4.57034 4.70969 4.79000 4.83329 4.85290 5.03197 5.08204 5.15348 5.39775 5.50591 6.16494 6.25975 6.85237 6.96829 8.49257 Molecular weight = 363.00amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.004926 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.060821 B = 5682.754236 C = 6961.574394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.331 6.331 3 C 0.145 3.855 4 C -0.195 4.195 5 C -0.042 4.042 6 C -0.147 4.147 7 Br -0.040 7.040 8 C -0.023 4.023 9 C -0.618 4.618 10 S 2.508 3.492 11 O -0.982 6.982 12 O -1.004 7.004 13 N -0.844 5.844 14 C 0.076 3.924 15 C -0.287 4.287 16 H 0.078 0.922 17 C 0.027 3.973 18 N -0.871 5.871 19 Si 0.930 3.070 20 H -0.244 1.244 21 H -0.281 1.281 22 H -0.240 1.240 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.289 0.711 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 7.860 -7.901 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.244 6.244 3 C 0.098 3.902 4 C -0.215 4.215 5 C -0.062 4.062 6 C -0.227 4.227 7 Br 0.046 6.954 8 C -0.027 4.027 9 C -0.739 4.739 10 S 2.609 3.391 11 O -0.972 6.972 12 O -0.994 6.994 13 N -0.671 5.671 14 C -0.069 4.069 15 C -0.431 4.431 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.507 5.507 19 Si 0.753 3.247 20 H -0.169 1.169 21 H -0.208 1.208 22 H -0.163 1.163 23 C -0.190 4.190 24 H 0.095 0.905 25 H 0.139 0.861 26 H 0.090 0.910 27 H 0.198 0.802 28 H 0.188 0.812 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.217 8.301 -7.122 21.248 hybrid contribution 0.404 -0.453 -1.126 1.280 sum -17.813 7.848 -8.249 21.141 Atomic orbital electron populations 1.23522 0.75478 1.06168 1.03057 1.86112 1.24372 1.26082 1.87876 1.19088 0.91456 0.85773 0.93862 1.21638 1.02169 0.90269 1.07384 1.21263 0.91004 0.99760 0.94134 1.21868 0.96280 0.90907 1.13650 1.96655 1.80236 1.20878 1.97671 1.18821 0.92712 0.92512 0.98631 1.30177 0.99893 1.12263 1.31590 1.11336 0.74521 0.73024 0.80175 1.93409 1.83326 1.45704 1.74727 1.93374 1.85371 1.45845 1.74804 1.53608 1.20827 1.09848 1.82784 1.21868 0.98464 0.83368 1.03181 1.18964 1.06512 0.93363 1.24258 0.90466 1.26399 0.94583 0.98366 0.99044 1.69909 1.07500 1.35743 1.37593 0.86091 0.81056 0.79215 0.78383 1.16929 1.20780 1.16284 1.20473 0.93364 0.97569 1.07587 0.90501 0.86128 0.91024 0.80244 0.81204 0.84067 0.83763 0.91231 0.92062 0.89666 0.90076 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.26 16 2 O -0.33 -8.12 10.50 -92.55 -0.97 -9.09 16 3 C 0.14 3.98 6.69 22.51 0.15 4.13 16 4 C -0.20 -4.12 9.04 22.36 0.20 -3.92 16 5 C -0.04 -0.99 9.78 22.27 0.22 -0.77 16 6 C -0.15 -4.54 6.22 22.32 0.14 -4.40 16 7 Br -0.04 -1.20 31.08 -20.37 -0.63 -1.83 16 8 C -0.02 -0.82 5.14 -19.86 -0.10 -0.92 16 9 C -0.62 -23.53 5.84 71.24 0.42 -23.12 16 10 S 2.51 115.95 5.33 -56.49 -0.30 115.65 16 11 O -0.98 -45.40 16.44 -127.65 -2.10 -47.50 16 12 O -1.00 -54.39 16.88 -127.65 -2.15 -56.54 16 13 N -0.84 -39.92 2.83 -364.91 -1.03 -40.96 16 14 C 0.08 3.01 8.88 127.77 1.13 4.14 16 15 C -0.29 -15.43 9.56 84.03 0.80 -14.63 16 16 H 0.08 4.74 7.49 -2.91 -0.02 4.72 16 17 C 0.03 1.40 5.31 84.86 0.45 1.85 16 18 N -0.87 -46.96 13.97 21.65 0.30 -46.66 16 19 Si 0.93 37.35 24.93 68.60 1.71 39.06 16 20 H -0.24 -8.89 6.68 99.48 0.66 -8.22 16 21 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 22 H -0.24 -8.87 7.11 99.48 0.71 -8.16 16 23 C -0.17 -5.78 9.64 22.36 0.22 -5.57 16 24 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 25 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.18 2.16 6.30 -2.91 -0.02 2.14 16 28 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 29 H 0.14 5.19 8.09 -2.39 -0.02 5.17 16 30 H 0.14 5.00 6.64 -2.39 -0.02 4.99 16 31 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.35 3.14 -2.39 -0.01 2.34 16 33 H 0.08 2.85 7.88 -2.39 -0.02 2.83 16 34 H 0.29 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -69.28 324.31 0.64 -68.64 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 1.08 Total: 21.17 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 4.74 Total: -41.94 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -0.73 Total: -87.62 kcal Atomic # 8 Polarization: -107.91 SS G_CDS: -5.22 Total: -113.13 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.71 Total: 39.06 kcal Atomic # 16 Polarization: 115.95 SS G_CDS: -0.30 Total: 115.65 kcal Atomic # 35 Polarization: -1.20 SS G_CDS: -0.63 Total: -1.83 kcal Total: -69.28 0.64 -68.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000241277611.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.719 kcal (2) G-P(sol) polarization free energy of solvation -69.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds