Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00061 * 2 1 4 4 C 1.52995 * 109.47222 * 66.04316 * 3 2 1 5 5 H 1.09000 * 109.47265 * 301.18501 * 4 3 2 6 6 C 1.50704 * 109.47107 * 181.18345 * 4 3 2 7 7 C 1.33388 * 125.19814 * 100.00595 * 6 4 3 8 8 C 1.38422 * 114.91807 * 179.97438 * 7 6 4 9 9 C 1.33388 * 114.92199 * 0.23699 * 8 7 6 10 10 S 1.75881 * 125.20580 * 279.96110 * 6 4 3 11 11 N 1.46904 * 109.47277 * 61.18809 * 4 3 2 12 12 C 1.47012 * 110.99774 * 44.29629 * 11 4 3 13 13 C 1.53100 * 109.25903 * 177.60969 * 12 11 4 14 14 O 1.43027 * 109.25493 * 56.85082 * 13 12 11 15 15 C 1.43017 * 113.73960 * 301.33034 * 14 13 12 16 16 C 1.47012 * 110.99674 * 280.66955 * 11 4 3 17 17 C 1.46900 * 111.00059 * 236.04128 * 2 1 3 18 18 C 1.52994 * 109.47240 * 200.39429 * 17 2 1 19 19 H 1.09002 * 109.47273 * 305.04717 * 18 17 2 20 20 C 1.47204 * 109.47360 * 65.04921 * 18 17 2 21 21 N 3.66567 * 123.42721 * 157.49747 * 2 1 3 22 22 C 1.53002 * 109.47222 * 185.05180 * 18 17 2 23 23 C 1.50697 * 109.47423 * 174.99976 * 22 18 17 24 24 H 1.08007 * 119.99937 * 0.02562 * 23 22 18 25 25 C 1.37876 * 120.00418 * 179.97438 * 23 22 18 26 26 N 1.31517 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00027 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47226 * 90.00496 * 27 25 23 29 29 H 1.48506 * 109.47079 * 209.99741 * 27 25 23 30 30 H 1.48490 * 109.47277 * 329.99989 * 27 25 23 31 31 H 1.08994 * 109.47133 * 63.88533 * 1 2 3 32 32 H 1.09001 * 109.46835 * 183.88585 * 1 2 3 33 33 H 1.09004 * 109.47227 * 303.88089 * 1 2 3 34 34 H 1.08999 * 109.46886 * 306.04531 * 3 2 1 35 35 H 1.09000 * 109.47375 * 186.04486 * 3 2 1 36 36 H 1.08002 * 122.54482 * 359.93785 * 7 6 4 37 37 H 1.08000 * 122.54196 * 179.97438 * 8 7 6 38 38 H 1.07999 * 125.20734 * 179.75590 * 9 8 7 39 39 H 1.09000 * 109.51164 * 297.54500 * 12 11 4 40 40 H 1.08997 * 109.50513 * 57.68004 * 12 11 4 41 41 H 1.09001 * 109.50828 * 296.92257 * 13 12 11 42 42 H 1.08992 * 109.51189 * 176.78505 * 13 12 11 43 43 H 1.09005 * 109.50459 * 298.73740 * 15 14 13 44 44 H 1.08989 * 109.53992 * 178.62537 * 15 14 13 45 45 H 1.09007 * 109.50605 * 302.32244 * 16 11 4 46 46 H 1.09003 * 109.51164 * 62.44950 * 16 11 4 47 47 H 1.08996 * 109.47249 * 320.40105 * 17 2 1 48 48 H 1.09008 * 109.46634 * 80.39533 * 17 2 1 49 49 H 1.09002 * 109.47044 * 294.99863 * 22 18 17 50 50 H 1.08997 * 109.47527 * 54.99798 * 22 18 17 51 51 H 0.96996 * 120.00056 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 1 0.5479 2.0658 1.4364 6 6 2.1464 3.4738 1.3063 7 6 1.4125 4.5565 1.0449 8 6 2.1036 5.7549 1.0926 9 6 3.3997 5.6449 1.3879 10 16 3.8065 3.9519 1.6362 11 7 2.2404 1.3245 2.4362 12 6 3.6347 0.9683 2.1355 13 6 4.2476 0.2605 3.3468 14 8 3.4551 -0.8839 3.6752 15 6 2.0915 -0.5734 3.9744 16 6 1.4569 0.1260 2.7693 17 6 1.9955 -0.7661 -1.1375 18 6 3.4405 -1.1783 -0.8498 19 1 4.0301 -0.2932 -0.6108 20 6 3.4675 -2.1085 0.2908 21 7 3.4883 -2.8264 1.1709 22 6 4.0298 -1.8660 -2.0829 23 6 5.4881 -2.1619 -1.8443 24 1 5.9484 -1.8873 -0.9066 25 6 6.2344 -2.7841 -2.8225 26 7 5.6738 -3.1189 -3.9641 27 14 8.0418 -3.1514 -2.5263 28 1 8.1796 -4.4974 -1.9141 29 1 8.7719 -3.1187 -3.8190 30 1 8.6108 -2.1305 -1.6104 31 1 -0.3633 0.4523 -0.9227 32 1 -0.3633 -1.0253 0.0696 33 1 -0.3634 0.5729 0.8532 34 1 1.5611 1.9273 -0.8309 35 1 3.0797 1.3444 -0.1082 36 1 0.3591 4.5023 0.8129 37 1 1.6303 6.7065 0.9009 38 1 4.0930 6.4695 1.4649 39 1 3.6624 0.3028 1.2727 40 1 4.2023 1.8728 1.9168 41 1 4.2688 0.9442 4.1956 42 1 5.2628 -0.0561 3.1082 43 1 2.0502 0.0860 4.8414 44 1 1.5472 -1.4927 4.1900 45 1 0.4347 0.4155 3.0134 46 1 1.4497 -0.5530 1.9166 47 1 1.3865 -1.6574 -1.2883 48 1 1.9656 -0.1493 -2.0358 49 1 3.4958 -2.7978 -2.2693 50 1 3.9290 -1.2103 -2.9477 51 1 6.1989 -3.5563 -4.6524 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247030480.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = 41.597414 kcal Electronic energy + Delta-G solvation = -32492.909286 eV Core-core repulsion = 28519.936984 eV Total energy + Delta-G solvation = -3972.972302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.29026 -38.14675 -37.72368 -36.17123 -34.98966 -33.52971 -31.80599 -31.48980 -30.79425 -28.20581 -27.55127 -26.54578 -24.90065 -24.14355 -23.90742 -22.37416 -21.80795 -21.00650 -19.89074 -19.29360 -17.45643 -16.82424 -16.64988 -16.29159 -15.89944 -15.61460 -15.58914 -15.19601 -14.95124 -14.73740 -14.46364 -14.37394 -13.96143 -13.61239 -13.16645 -12.98078 -12.87422 -12.76992 -12.58053 -12.56792 -12.34123 -12.18847 -12.08205 -11.91312 -11.72001 -11.55298 -11.46822 -11.21881 -11.14426 -11.02442 -10.83121 -10.66753 -10.63020 -10.52153 -10.22250 -10.17078 -9.56240 -9.44909 -9.24329 -8.82860 -8.66273 -8.50757 -8.45730 -7.86718 -6.10049 -4.12958 0.93177 1.57704 1.98210 2.64365 3.29955 3.36586 3.39768 3.72568 3.81055 3.85328 3.96114 4.10944 4.40973 4.60864 4.79940 4.90798 4.96147 4.98569 5.08770 5.12514 5.20091 5.25589 5.28427 5.32229 5.35689 5.38557 5.41929 5.48257 5.51878 5.59878 5.61981 5.70717 5.74553 5.75744 5.83366 5.94773 5.96406 6.03513 6.06674 6.19745 6.31071 6.37581 6.40875 6.47729 6.87278 6.97385 6.98984 7.02210 7.37777 7.40457 7.50935 7.85177 8.22633 8.68613 8.91756 9.52659 11.00921 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.009487 B = 0.003497 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.800410 B = 8004.515150 C = 8618.409497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.540 5.540 3 C 0.020 3.980 4 C 0.156 3.844 5 H 0.098 0.902 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.236 4.236 10 S 0.130 5.870 11 N -0.518 5.518 12 C 0.009 3.991 13 C 0.068 3.932 14 O -0.367 6.367 15 C 0.068 3.932 16 C 0.001 3.999 17 C 0.059 3.941 18 C 0.014 3.986 19 H 0.092 0.908 20 C 0.239 3.761 21 N -0.453 5.453 22 C 0.032 3.968 23 C -0.523 4.523 24 H 0.056 0.944 25 C 0.063 3.937 26 N -0.892 5.892 27 Si 0.890 3.110 28 H -0.280 1.280 29 H -0.286 1.286 30 H -0.272 1.272 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.025 0.975 50 H 0.035 0.965 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 16.652 10.079 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.263 5.263 3 C -0.109 4.109 4 C 0.045 3.955 5 H 0.115 0.885 6 C -0.273 4.273 7 C -0.172 4.172 8 C -0.166 4.166 9 C -0.371 4.371 10 S 0.394 5.606 11 N -0.242 5.242 12 C -0.120 4.120 13 C -0.009 4.009 14 O -0.285 6.285 15 C -0.010 4.010 16 C -0.127 4.127 17 C -0.069 4.069 18 C -0.008 4.008 19 H 0.110 0.890 20 C -0.079 4.079 21 N -0.129 5.129 22 C -0.007 4.007 23 C -0.562 4.562 24 H 0.075 0.925 25 C -0.139 4.139 26 N -0.531 5.531 27 Si 0.718 3.282 28 H -0.206 1.206 29 H -0.211 1.211 30 H -0.197 1.197 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.053 0.947 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.820 14.620 12.460 21.574 hybrid contribution -0.616 1.235 -2.151 2.556 sum -10.436 15.855 10.309 21.600 Atomic orbital electron populations 1.22494 0.87520 1.02469 1.00451 1.62139 1.07728 1.12687 1.43756 1.22961 1.02081 0.88861 0.97025 1.20146 0.98911 0.86953 0.89497 0.88456 1.24355 0.96845 0.98261 1.07790 1.19990 1.01021 0.91177 1.05025 1.20057 0.93756 0.98955 1.03839 1.25961 1.00192 1.01420 1.09573 1.84466 1.09038 0.98672 1.68398 1.62538 1.02099 1.23266 1.36317 1.23072 0.89545 0.99530 0.99860 1.22555 0.94902 0.87948 0.95517 1.88132 1.20393 1.30831 1.89102 1.22571 0.83239 0.99413 0.95765 1.23211 0.96245 0.92578 1.00638 1.22307 0.95627 0.97903 0.91051 1.19162 0.95156 0.95007 0.91516 0.89045 1.28700 0.92191 0.93768 0.93216 1.81041 1.09322 1.10822 1.11693 1.19161 0.95895 0.95995 0.89607 1.21108 0.94477 1.39360 1.01216 0.92532 1.24936 0.98511 0.95367 0.95047 1.69936 1.36428 1.41027 1.05700 0.86613 0.85056 0.78974 0.77578 1.20602 1.21137 1.19712 0.95230 0.91065 0.91565 0.93547 0.89362 0.84744 0.84885 0.82466 0.90854 0.90877 0.93045 0.88835 0.93619 0.89197 0.91238 0.88080 0.90068 0.92477 0.95628 0.94696 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.35 60.07 0.50 0.68 16 2 N -0.54 -6.42 1.55 -242.92 -0.38 -6.80 16 3 C 0.02 0.23 3.47 -3.83 -0.01 0.22 16 4 C 0.16 1.65 2.26 -68.86 -0.16 1.50 16 5 H 0.10 0.94 6.12 -51.93 -0.32 0.63 16 6 C -0.15 -1.64 5.45 -36.00 -0.20 -1.84 16 7 C -0.14 -1.37 10.04 -41.21 -0.41 -1.78 16 8 C -0.14 -1.26 10.18 -41.21 -0.42 -1.68 16 9 C -0.24 -2.27 11.23 29.04 0.33 -1.94 16 10 S 0.13 1.40 19.78 -107.50 -2.13 -0.72 16 11 N -0.52 -6.16 4.57 -227.71 -1.04 -7.20 16 12 C 0.01 0.11 4.41 -3.71 -0.02 0.10 16 13 C 0.07 0.95 7.01 37.21 0.26 1.21 16 14 O -0.37 -5.85 10.83 -35.23 -0.38 -6.23 16 15 C 0.07 0.88 7.01 37.21 0.26 1.14 16 16 C 0.00 0.01 4.41 -3.71 -0.02 0.00 16 17 C 0.06 0.84 4.37 -3.83 -0.02 0.82 16 18 C 0.01 0.25 1.78 -93.41 -0.17 0.08 16 19 H 0.09 1.61 5.76 -51.93 -0.30 1.31 16 20 C 0.24 4.81 12.72 -20.76 -0.26 4.55 16 21 N -0.45 -9.89 18.54 42.15 0.78 -9.11 16 22 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 23 C -0.52 -13.82 8.60 -34.44 -0.30 -14.11 16 24 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 25 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 26 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 27 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.07 0.56 5.51 -51.93 -0.29 0.27 16 34 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.09 1.14 4.93 -51.93 -0.26 0.89 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 39 H 0.07 1.11 3.42 -51.93 -0.18 0.93 16 40 H 0.07 0.92 4.39 -31.72 -0.14 0.78 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 1.11 8.14 -51.94 -0.42 0.69 16 45 H 0.07 0.72 7.82 -51.92 -0.41 0.31 16 46 H 0.10 1.39 4.92 -51.93 -0.26 1.13 16 47 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 48 H 0.06 0.76 7.99 -51.92 -0.41 0.34 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -30.24 402.54 -9.77 -40.01 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.56 Total: 1.22 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -0.85 Total: -8.82 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.10 Total: -47.78 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.38 Total: -6.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.13 Total: -0.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.24 -9.77 -40.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247030480.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.606 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds