Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99882 * 2 1 4 4 C 1.53003 * 109.47080 * 293.95386 * 3 2 1 5 5 H 1.09002 * 109.47368 * 54.99831 * 4 3 2 6 6 C 1.47201 * 109.46823 * 294.99934 * 4 3 2 7 7 N 3.66501 * 112.02786 * 284.54376 * 2 1 3 8 8 C 1.52997 * 109.46931 * 175.00084 * 4 3 2 9 9 C 1.50702 * 109.47118 * 184.99940 * 8 4 3 10 10 H 1.08003 * 119.99944 * 359.97438 * 9 8 4 11 11 C 1.37873 * 120.00388 * 179.97438 * 9 8 4 12 12 N 1.31519 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00232 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47154 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46868 * 120.00180 * 13 11 9 16 16 H 1.48500 * 109.47519 * 240.00042 * 13 11 9 17 17 C 1.46900 * 110.99961 * 123.94997 * 2 1 3 18 18 C 1.53003 * 109.46740 * 66.05004 * 17 2 1 19 19 H 1.08996 * 109.47378 * 300.17317 * 18 17 2 20 20 C 1.50703 * 109.47040 * 180.17411 * 18 17 2 21 21 C 1.33387 * 125.20037 * 99.99523 * 20 18 17 22 22 C 1.38425 * 114.92015 * 179.97438 * 21 20 18 23 23 C 1.33389 * 114.92318 * 0.24570 * 22 21 20 24 24 S 1.75882 * 125.20340 * 279.96272 * 20 18 17 25 25 N 1.46904 * 109.47210 * 60.17821 * 18 17 2 26 26 C 1.47011 * 110.99953 * 43.75235 * 25 18 17 27 27 C 1.53103 * 109.25744 * 177.60893 * 26 25 18 28 28 O 1.43015 * 109.25538 * 56.84751 * 27 26 25 29 29 C 1.43014 * 113.74199 * 301.33186 * 28 27 26 30 30 C 1.47013 * 110.99911 * 280.11849 * 25 18 17 31 31 H 1.08998 * 109.47729 * 296.04556 * 1 2 3 32 32 H 1.09006 * 109.47002 * 56.05051 * 1 2 3 33 33 H 1.09007 * 109.47316 * 176.04377 * 1 2 3 34 34 H 1.09000 * 109.47144 * 53.95200 * 3 2 1 35 35 H 1.08996 * 109.47228 * 173.95185 * 3 2 1 36 36 H 1.09001 * 109.47468 * 304.99794 * 8 4 3 37 37 H 1.09002 * 109.47675 * 65.00175 * 8 4 3 38 38 H 0.96996 * 119.99922 * 179.97438 * 12 11 9 39 39 H 1.08992 * 109.47472 * 306.05072 * 17 2 1 40 40 H 1.09001 * 109.46991 * 186.04315 * 17 2 1 41 41 H 1.08000 * 122.54371 * 359.95190 * 21 20 18 42 42 H 1.07998 * 122.53996 * 179.97438 * 22 21 20 43 43 H 1.07992 * 125.20835 * 179.74930 * 23 22 21 44 44 H 1.09001 * 109.50835 * 297.54256 * 26 25 18 45 45 H 1.08998 * 109.50660 * 57.67681 * 26 25 18 46 46 H 1.08997 * 109.50452 * 296.91617 * 27 26 25 47 47 H 1.08993 * 109.54490 * 176.80680 * 27 26 25 48 48 H 1.09009 * 109.50930 * 298.73579 * 29 28 27 49 49 H 1.08993 * 109.54524 * 178.63065 * 29 28 27 50 50 H 1.09004 * 109.50576 * 302.33360 * 30 25 18 51 51 H 1.09004 * 109.50598 * 62.45208 * 30 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 1 0.5531 2.0058 -1.4692 6 6 2.3155 1.3777 -2.4303 7 7 2.8436 0.8532 -3.2886 8 6 2.0699 3.5224 -1.2689 9 6 1.6030 4.2288 -2.5155 10 1 1.0493 3.6869 -3.2680 11 6 1.8827 5.5668 -2.6955 12 7 2.5574 6.2266 -1.7795 13 14 1.3046 6.4422 -4.2411 14 1 0.5728 5.4842 -5.1082 15 1 0.4019 7.5609 -3.8681 16 1 2.4790 6.9777 -4.9755 17 6 1.9954 -0.7659 1.1376 18 6 1.6314 -2.2426 0.9704 19 1 0.5473 -2.3472 0.9292 20 6 2.1678 -3.0277 2.1396 21 6 1.4525 -3.4213 3.1944 22 6 2.1613 -4.1329 4.1470 23 6 3.4532 -4.3129 3.8681 24 16 3.8323 -3.5659 2.3215 25 7 2.2205 -2.7541 -0.2744 26 6 3.6073 -2.2918 -0.4299 27 6 4.2005 -2.8949 -1.7060 28 8 3.3817 -2.5358 -2.8222 29 6 2.0244 -2.9710 -2.7043 30 6 1.4093 -2.3687 -1.4384 31 1 -0.3634 0.4512 0.9232 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3634 -1.0253 -0.0709 34 1 1.5610 1.9274 0.8309 35 1 3.0796 1.3445 0.1083 36 1 1.6329 4.0032 -0.3937 37 1 3.1569 3.5745 -1.2073 38 1 2.7545 7.1678 -1.9063 39 1 1.5611 -0.3872 2.0628 40 1 3.0797 -0.6610 1.1756 41 1 0.4003 -3.2011 3.2977 42 1 1.7039 -4.5100 5.0498 43 1 4.1582 -4.8384 4.4951 44 1 3.6227 -1.2042 -0.5001 45 1 4.1957 -2.6101 0.4307 46 1 4.2345 -3.9804 -1.6138 47 1 5.2094 -2.5106 -1.8561 48 1 1.9951 -4.0588 -2.6412 49 1 1.4589 -2.6417 -3.5759 50 1 0.3931 -2.7430 -1.3138 51 1 1.3895 -1.2823 -1.5246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247030516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = 41.197783 kcal Electronic energy + Delta-G solvation = -31904.116980 eV Core-core repulsion = 27931.127349 eV Total energy + Delta-G solvation = -3972.989631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.29799 -38.22836 -37.81572 -36.30153 -34.97404 -33.51357 -31.85987 -31.42295 -30.87591 -28.24043 -27.50341 -26.74033 -25.10457 -24.10566 -23.93131 -22.33352 -21.70176 -21.11497 -19.94856 -19.37767 -17.53209 -16.83495 -16.61567 -16.35208 -15.97617 -15.74564 -15.63317 -15.24470 -14.99905 -14.88805 -14.46378 -14.40295 -13.90460 -13.63993 -13.21466 -13.08145 -12.97204 -12.82515 -12.65683 -12.52568 -12.40302 -12.20323 -12.14631 -11.89226 -11.71708 -11.59690 -11.51745 -11.23473 -11.17750 -11.05433 -10.85293 -10.73040 -10.67732 -10.52394 -10.31803 -10.17096 -9.58450 -9.51607 -9.24109 -8.89074 -8.72210 -8.59862 -8.47343 -7.90955 -6.11343 -4.14318 0.84521 1.48502 1.88714 2.56689 3.27200 3.35725 3.40114 3.69350 3.74318 3.84049 3.91515 4.03851 4.39872 4.54701 4.74538 4.89236 4.90426 4.94525 5.01592 5.08176 5.17915 5.21541 5.25762 5.27104 5.31494 5.35613 5.42039 5.43008 5.47538 5.54184 5.55872 5.67434 5.69510 5.70626 5.88792 5.89108 5.93365 5.99467 6.01200 6.12242 6.29891 6.31221 6.38184 6.46430 6.82763 6.92549 6.96124 7.01550 7.30603 7.39814 7.50556 7.84074 8.21368 8.64863 8.90747 9.51374 10.99625 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.002720 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.220500 B =10293.275367 C =11264.306063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.539 5.539 3 C 0.062 3.938 4 C 0.012 3.988 5 H 0.098 0.902 6 C 0.239 3.761 7 N -0.456 5.456 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.026 3.974 18 C 0.156 3.844 19 H 0.099 0.901 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.236 4.236 24 S 0.123 5.877 25 N -0.518 5.518 26 C 0.015 3.985 27 C 0.068 3.932 28 O -0.369 6.369 29 C 0.068 3.932 30 C 0.000 4.000 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.092 0.908 48 H 0.046 0.954 49 H 0.092 0.908 50 H 0.071 0.929 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -21.281 12.381 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.263 5.263 3 C -0.067 4.067 4 C -0.010 4.010 5 H 0.116 0.884 6 C -0.078 4.078 7 N -0.133 5.133 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.104 4.104 18 C 0.044 3.956 19 H 0.117 0.883 20 C -0.271 4.271 21 C -0.172 4.172 22 C -0.164 4.164 23 C -0.371 4.371 24 S 0.387 5.613 25 N -0.242 5.242 26 C -0.114 4.114 27 C -0.009 4.009 28 O -0.287 6.287 29 C -0.009 4.009 30 C -0.128 4.128 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.175 0.825 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.110 0.890 48 H 0.064 0.936 49 H 0.110 0.890 50 H 0.089 0.911 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.117 -22.428 9.699 24.435 hybrid contribution -2.141 1.702 1.555 3.146 sum -2.024 -20.726 11.254 23.671 Atomic orbital electron populations 1.22608 0.87358 1.01999 1.01693 1.62155 1.08193 1.14585 1.41335 1.22272 1.00656 0.86652 0.97083 1.19192 0.99109 0.96748 0.85903 0.88388 1.28809 0.93366 0.91653 0.93981 1.81077 1.09767 1.11368 1.11066 1.19158 0.97653 0.85405 0.98434 1.21155 1.35890 0.94752 1.04373 0.92471 1.24952 0.94945 0.97596 0.96493 1.69947 1.39522 1.09563 1.34017 0.86545 0.78597 0.79654 0.83349 1.19660 1.20892 1.20948 1.22854 1.01342 0.93471 0.92750 1.20147 0.99056 0.89905 0.86449 0.88331 1.24362 0.96771 1.05914 1.00016 1.20025 1.01174 1.01654 0.94330 1.20078 0.93656 1.01793 1.00915 1.25934 1.00346 1.08689 1.02116 1.84365 1.09279 1.52189 1.15460 1.62532 1.02106 1.58012 1.01570 1.22949 0.89883 1.00396 0.98147 1.22545 0.94446 0.98662 0.85256 1.88114 1.20297 1.79291 1.40982 1.22582 0.83231 0.97667 0.97439 1.23245 0.96065 1.03955 0.89521 0.94973 0.90225 0.91636 0.92657 0.90430 0.94663 0.95665 0.92864 0.93668 0.90048 0.84612 0.84798 0.82454 0.91505 0.91009 0.93028 0.88951 0.93560 0.89036 0.91070 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.15 60.06 0.49 0.60 16 2 N -0.54 -6.37 1.57 -242.92 -0.38 -6.75 16 3 C 0.06 0.86 4.32 -3.82 -0.02 0.85 16 4 C 0.01 0.22 2.14 -93.41 -0.20 0.02 16 5 H 0.10 1.63 6.26 -51.93 -0.33 1.30 16 6 C 0.24 4.81 13.67 -20.76 -0.28 4.53 16 7 N -0.46 -10.00 18.54 42.15 0.78 -9.22 16 8 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 9 C -0.52 -13.76 8.60 -34.44 -0.30 -14.06 16 10 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 13 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.03 0.27 3.64 -3.82 -0.01 0.26 16 18 C 0.16 1.56 2.26 -68.86 -0.16 1.41 16 19 H 0.10 0.94 6.24 -51.93 -0.32 0.61 16 20 C -0.15 -1.51 5.45 -36.00 -0.20 -1.70 16 21 C -0.14 -1.28 10.04 -41.21 -0.41 -1.70 16 22 C -0.13 -1.15 10.18 -41.21 -0.42 -1.57 16 23 C -0.24 -2.04 11.23 29.04 0.33 -1.71 16 24 S 0.12 1.18 19.82 -107.50 -2.13 -0.95 16 25 N -0.52 -5.85 4.56 -227.72 -1.04 -6.89 16 26 C 0.02 0.18 4.38 -3.71 -0.02 0.16 16 27 C 0.07 0.86 7.01 37.21 0.26 1.12 16 28 O -0.37 -5.65 10.83 -35.23 -0.38 -6.04 16 29 C 0.07 0.87 7.01 37.20 0.26 1.13 16 30 C 0.00 0.00 4.33 -3.72 -0.02 -0.02 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.88 6.21 -51.93 -0.32 0.56 16 33 H 0.06 0.59 5.42 -51.93 -0.28 0.30 16 34 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 39 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 40 H 0.08 0.94 6.18 -51.93 -0.32 0.62 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.07 0.94 6.05 -51.93 -0.31 0.63 16 45 H 0.07 0.79 4.46 -32.70 -0.15 0.64 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 51 H 0.10 1.41 4.83 -51.93 -0.25 1.16 16 LS Contribution 406.34 15.07 6.12 6.12 Total: -1.00 -30.41 406.34 -9.92 -40.34 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.70 Total: 0.29 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -0.91 Total: -8.47 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.10 Total: -47.50 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.38 Total: -6.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.13 Total: -0.95 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.41 -9.92 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247030516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.536 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds