Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99882 * 2 1 4 4 C 1.53003 * 109.47080 * 293.95386 * 3 2 1 5 5 H 1.09002 * 109.47368 * 54.99831 * 4 3 2 6 6 C 1.47201 * 109.46823 * 294.99934 * 4 3 2 7 7 N 3.66501 * 112.02786 * 284.54376 * 2 1 3 8 8 C 1.52997 * 109.46931 * 175.00084 * 4 3 2 9 9 C 1.50702 * 109.47118 * 184.99940 * 8 4 3 10 10 H 1.08003 * 119.99944 * 359.97438 * 9 8 4 11 11 C 1.37873 * 120.00388 * 179.97438 * 9 8 4 12 12 N 1.31519 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00232 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47154 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46868 * 120.00180 * 13 11 9 16 16 H 1.48500 * 109.47519 * 240.00042 * 13 11 9 17 17 C 1.46900 * 110.99961 * 123.94997 * 2 1 3 18 18 C 1.53003 * 109.46740 * 66.05004 * 17 2 1 19 19 H 1.08996 * 109.47378 * 300.17317 * 18 17 2 20 20 C 1.50703 * 109.47040 * 180.17411 * 18 17 2 21 21 C 1.33387 * 125.20037 * 99.99523 * 20 18 17 22 22 C 1.38425 * 114.92015 * 179.97438 * 21 20 18 23 23 C 1.33389 * 114.92318 * 0.24570 * 22 21 20 24 24 S 1.75882 * 125.20340 * 279.96272 * 20 18 17 25 25 N 1.46904 * 109.47210 * 60.17821 * 18 17 2 26 26 C 1.47011 * 110.99953 * 43.75235 * 25 18 17 27 27 C 1.53103 * 109.25744 * 177.60893 * 26 25 18 28 28 O 1.43015 * 109.25538 * 56.84751 * 27 26 25 29 29 C 1.43014 * 113.74199 * 301.33186 * 28 27 26 30 30 C 1.47013 * 110.99911 * 280.11849 * 25 18 17 31 31 H 1.08998 * 109.47729 * 296.04556 * 1 2 3 32 32 H 1.09006 * 109.47002 * 56.05051 * 1 2 3 33 33 H 1.09007 * 109.47316 * 176.04377 * 1 2 3 34 34 H 1.09000 * 109.47144 * 53.95200 * 3 2 1 35 35 H 1.08996 * 109.47228 * 173.95185 * 3 2 1 36 36 H 1.09001 * 109.47468 * 304.99794 * 8 4 3 37 37 H 1.09002 * 109.47675 * 65.00175 * 8 4 3 38 38 H 0.96996 * 119.99922 * 179.97438 * 12 11 9 39 39 H 1.08992 * 109.47472 * 306.05072 * 17 2 1 40 40 H 1.09001 * 109.46991 * 186.04315 * 17 2 1 41 41 H 1.08000 * 122.54371 * 359.95190 * 21 20 18 42 42 H 1.07998 * 122.53996 * 179.97438 * 22 21 20 43 43 H 1.07992 * 125.20835 * 179.74930 * 23 22 21 44 44 H 1.09001 * 109.50835 * 297.54256 * 26 25 18 45 45 H 1.08998 * 109.50660 * 57.67681 * 26 25 18 46 46 H 1.08997 * 109.50452 * 296.91617 * 27 26 25 47 47 H 1.08993 * 109.54490 * 176.80680 * 27 26 25 48 48 H 1.09009 * 109.50930 * 298.73579 * 29 28 27 49 49 H 1.08993 * 109.54524 * 178.63065 * 29 28 27 50 50 H 1.09004 * 109.50576 * 302.33360 * 30 25 18 51 51 H 1.09004 * 109.50598 * 62.45208 * 30 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 1 0.5531 2.0058 -1.4692 6 6 2.3155 1.3777 -2.4303 7 7 2.8436 0.8532 -3.2886 8 6 2.0699 3.5224 -1.2689 9 6 1.6030 4.2288 -2.5155 10 1 1.0493 3.6869 -3.2680 11 6 1.8827 5.5668 -2.6955 12 7 2.5574 6.2266 -1.7795 13 14 1.3046 6.4422 -4.2411 14 1 0.5728 5.4842 -5.1082 15 1 0.4019 7.5609 -3.8681 16 1 2.4790 6.9777 -4.9755 17 6 1.9954 -0.7659 1.1376 18 6 1.6314 -2.2426 0.9704 19 1 0.5473 -2.3472 0.9292 20 6 2.1678 -3.0277 2.1396 21 6 1.4525 -3.4213 3.1944 22 6 2.1613 -4.1329 4.1470 23 6 3.4532 -4.3129 3.8681 24 16 3.8323 -3.5659 2.3215 25 7 2.2205 -2.7541 -0.2744 26 6 3.6073 -2.2918 -0.4299 27 6 4.2005 -2.8949 -1.7060 28 8 3.3817 -2.5358 -2.8222 29 6 2.0244 -2.9710 -2.7043 30 6 1.4093 -2.3687 -1.4384 31 1 -0.3634 0.4512 0.9232 32 1 -0.3633 0.5739 -0.8525 33 1 -0.3634 -1.0253 -0.0709 34 1 1.5610 1.9274 0.8309 35 1 3.0796 1.3445 0.1083 36 1 1.6329 4.0032 -0.3937 37 1 3.1569 3.5745 -1.2073 38 1 2.7545 7.1678 -1.9063 39 1 1.5611 -0.3872 2.0628 40 1 3.0797 -0.6610 1.1756 41 1 0.4003 -3.2011 3.2977 42 1 1.7039 -4.5100 5.0498 43 1 4.1582 -4.8384 4.4951 44 1 3.6227 -1.2042 -0.5001 45 1 4.1957 -2.6101 0.4307 46 1 4.2345 -3.9804 -1.6138 47 1 5.2094 -2.5106 -1.8561 48 1 1.9951 -4.0588 -2.6412 49 1 1.4589 -2.6417 -3.5759 50 1 0.3931 -2.7430 -1.3138 51 1 1.3895 -1.2823 -1.5246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247030516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 23.979556 kcal Electronic energy + Delta-G solvation = -31904.863618 eV Core-core repulsion = 27931.127349 eV Total energy + Delta-G solvation = -3973.736269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.22045 -39.27753 -38.68146 -37.54321 -36.20885 -35.34223 -33.41694 -32.40480 -31.85050 -29.19835 -28.74309 -27.83164 -26.30730 -25.05197 -24.92136 -23.69944 -23.07504 -22.08095 -20.84643 -20.06118 -18.57884 -18.31261 -18.15810 -17.40837 -16.95979 -16.77246 -16.55595 -16.46471 -16.09427 -15.99693 -15.77333 -15.37981 -15.03192 -14.74800 -14.55825 -14.21131 -14.06310 -13.91737 -13.68675 -13.57990 -13.45989 -13.40096 -13.22994 -13.00656 -12.97434 -12.87784 -12.70835 -12.58156 -12.54189 -12.46038 -12.29819 -12.13346 -11.76030 -11.70864 -11.55756 -11.36253 -11.18737 -11.11972 -10.56184 -10.53126 -9.73965 -9.49376 -9.30618 -8.82152 -8.20104 -6.27960 0.16471 0.79603 1.21110 1.38039 1.41573 1.51653 1.91056 2.18132 2.25997 2.40845 2.80648 2.86559 3.07596 3.15736 3.39813 3.73974 3.89893 4.07434 4.09672 4.12845 4.18117 4.25890 4.29163 4.32310 4.34024 4.51070 4.52834 4.56608 4.61978 4.65647 4.68647 4.73335 4.78007 4.80090 4.83222 4.86686 4.93706 4.98970 5.00932 5.17211 5.29029 5.40223 5.45874 5.46740 5.60755 5.65606 5.78652 5.93210 5.95531 6.02947 6.12348 6.20732 6.30964 6.84511 7.03914 7.40749 8.91067 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.002720 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.220500 B =10293.275367 C =11264.306063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.544 5.544 3 C 0.074 3.926 4 C 0.025 3.975 5 H 0.116 0.884 6 C 0.250 3.750 7 N -0.490 5.490 8 C 0.039 3.961 9 C -0.534 4.534 10 H 0.053 0.947 11 C 0.011 3.989 12 N -0.924 5.924 13 Si 0.947 3.053 14 H -0.269 1.269 15 H -0.272 1.272 16 H -0.286 1.286 17 C 0.032 3.968 18 C 0.162 3.838 19 H 0.111 0.889 20 C -0.167 4.167 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.234 4.234 24 S 0.094 5.906 25 N -0.516 5.516 26 C 0.023 3.977 27 C 0.065 3.935 28 O -0.400 6.400 29 C 0.065 3.935 30 C 0.004 3.996 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.032 0.968 37 H -0.003 1.003 38 H 0.263 0.737 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.176 0.824 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 -22.608 13.732 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.268 5.268 3 C -0.055 4.055 4 C 0.003 3.997 5 H 0.134 0.866 6 C -0.067 4.067 7 N -0.167 5.167 8 C 0.001 3.999 9 C -0.572 4.572 10 H 0.072 0.928 11 C -0.188 4.188 12 N -0.564 5.564 13 Si 0.773 3.227 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.213 1.213 17 C -0.097 4.097 18 C 0.052 3.948 19 H 0.128 0.872 20 C -0.285 4.285 21 C -0.169 4.169 22 C -0.171 4.171 23 C -0.369 4.369 24 S 0.358 5.642 25 N -0.240 5.240 26 C -0.106 4.106 27 C -0.012 4.012 28 O -0.319 6.319 29 C -0.012 4.012 30 C -0.124 4.124 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.193 0.807 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.075 0.925 49 H 0.106 0.894 50 H 0.108 0.892 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.577 -23.767 11.055 26.260 hybrid contribution -1.606 2.054 1.190 2.866 sum -3.183 -21.713 12.244 25.130 Atomic orbital electron populations 1.22657 0.86036 1.03067 1.01896 1.62084 1.09370 1.13026 1.42334 1.22026 1.00307 0.88090 0.95065 1.19109 0.99652 0.93853 0.87095 0.86632 1.29240 0.92661 0.91030 0.93748 1.81077 1.10849 1.12480 1.12256 1.18964 0.95686 0.88370 0.96919 1.21547 1.35242 0.95063 1.05358 0.92827 1.25703 0.95310 0.98616 0.99138 1.70040 1.40810 1.09891 1.35669 0.85661 0.78105 0.78811 0.80106 1.19335 1.19774 1.21251 1.22793 1.00615 0.93808 0.92495 1.20121 0.99542 0.89263 0.85904 0.87150 1.24348 0.96757 1.06966 1.00459 1.20308 1.02022 1.00758 0.93825 1.20374 0.93614 1.01528 1.01579 1.26184 1.00942 1.08385 1.01419 1.84423 1.09963 1.52969 1.16888 1.62546 1.01641 1.57861 1.01923 1.22820 0.90710 0.98812 0.98232 1.22649 0.94267 0.99325 0.84973 1.88064 1.21603 1.79914 1.42301 1.22675 0.82317 0.98317 0.97921 1.23172 0.96950 1.02845 0.89383 0.93771 0.91077 0.90016 0.91301 0.91453 0.94968 0.98459 0.92765 0.92715 0.91305 0.82911 0.82687 0.80697 0.93830 0.89983 0.91952 0.88962 0.92484 0.89428 0.89200 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.15 127.69 1.04 1.24 16 2 N -0.54 -12.12 1.57 -922.45 -1.45 -13.57 16 3 C 0.07 2.02 4.32 86.30 0.37 2.39 16 4 C 0.02 0.86 2.14 -12.60 -0.03 0.84 16 5 H 0.12 3.69 6.26 -2.39 -0.01 3.67 16 6 C 0.25 10.12 13.67 89.44 1.22 11.34 16 7 N -0.49 -21.79 18.54 20.01 0.37 -21.42 16 8 C 0.04 1.81 4.42 29.85 0.13 1.94 16 9 C -0.53 -28.17 8.60 25.60 0.22 -27.95 16 10 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 11 C 0.01 0.61 5.46 84.65 0.46 1.07 16 12 N -0.92 -53.08 13.29 21.45 0.28 -52.80 16 13 Si 0.95 43.51 29.54 68.60 2.03 45.53 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 17 C 0.03 0.64 3.64 86.30 0.31 0.95 16 18 C 0.16 2.93 2.26 44.17 0.10 3.03 16 19 H 0.11 1.74 6.24 -2.39 -0.01 1.73 16 20 C -0.17 -2.97 5.45 24.59 0.13 -2.83 16 21 C -0.14 -2.12 10.04 21.22 0.21 -1.90 16 22 C -0.14 -2.01 10.18 21.22 0.22 -1.79 16 23 C -0.23 -3.54 11.23 66.72 0.75 -2.79 16 24 S 0.09 1.69 19.82 -56.49 -1.12 0.57 16 25 N -0.52 -10.96 4.56 -874.36 -3.99 -14.95 16 26 C 0.02 0.55 4.38 86.32 0.38 0.93 16 27 C 0.06 1.64 7.01 72.02 0.50 2.15 16 28 O -0.40 -12.40 10.83 -148.98 -1.61 -14.02 16 29 C 0.06 1.62 7.01 72.01 0.50 2.13 16 30 C 0.00 0.10 4.33 86.31 0.37 0.47 16 31 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.42 6.21 -2.38 -0.01 1.40 16 33 H 0.08 1.21 5.42 -2.38 -0.01 1.20 16 34 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 40 H 0.07 1.55 6.18 -2.39 -0.01 1.53 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.04 1.25 6.05 -2.39 -0.01 1.23 16 45 H 0.08 1.78 4.46 -14.62 -0.07 1.72 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.09 1.66 7.73 -2.38 -0.02 1.64 16 51 H 0.09 2.28 4.83 -2.39 -0.01 2.27 16 Total: -1.00 -65.39 406.34 2.31 -63.08 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.88 Total: 16.37 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 6.91 Total: -8.80 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.78 Total: -102.74 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.61 Total: -14.02 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.12 Total: 0.57 kcal Total: -65.39 2.31 -63.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247030516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.062 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds