Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35946 * 116.99973 * 2 1 4 4 C 1.38078 * 120.00089 * 0.02562 * 3 2 1 5 5 C 1.39981 * 119.83934 * 179.97438 * 4 3 2 6 6 C 1.46966 * 120.07998 * 180.02562 * 5 4 3 7 7 C 1.35019 * 120.00008 * 180.02562 * 6 5 4 8 8 C 1.46258 * 120.00151 * 179.97438 * 7 6 5 9 9 O 1.21723 * 119.99523 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00125 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99929 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47277 * 185.13067 * 11 10 8 13 13 H 1.08998 * 109.46959 * 302.85787 * 12 11 10 14 14 C 1.53001 * 109.47173 * 182.85940 * 12 11 10 15 15 O 1.42899 * 109.47015 * 172.92343 * 14 12 11 16 16 C 1.53001 * 109.47452 * 62.85538 * 12 11 10 17 17 C 1.52998 * 109.47275 * 182.72648 * 16 12 11 18 18 C 1.53004 * 109.46945 * 62.72534 * 16 12 11 19 19 C 1.40034 * 119.84200 * 0.27836 * 5 4 3 20 20 C 1.37648 * 119.99686 * 359.42335 * 19 5 4 21 21 C 1.39060 * 120.16391 * 0.59752 * 20 19 5 22 22 O 1.35613 * 119.92165 * 179.69500 * 21 20 19 23 23 C 1.34758 * 116.99856 * 5.99047 * 22 21 20 24 24 H 1.07995 * 120.00171 * 5.49391 * 23 22 21 25 25 C 1.38710 * 120.00074 * 185.48529 * 23 22 21 26 26 N 1.31511 * 120.00230 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 119.99527 * 0.02562 * 25 23 22 28 28 H 1.48505 * 109.47308 * 89.99767 * 27 25 23 29 29 H 1.48504 * 109.46930 * 209.99479 * 27 25 23 30 30 H 1.48490 * 109.47181 * 329.99624 * 27 25 23 31 31 H 1.09003 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46897 * 299.99368 * 1 2 3 33 33 H 1.08995 * 109.47296 * 59.99723 * 1 2 3 34 34 H 1.07998 * 120.08406 * 359.96210 * 4 3 2 35 35 H 1.07994 * 119.99740 * 359.97438 * 6 5 4 36 36 H 1.08004 * 120.00179 * 359.97438 * 7 6 5 37 37 H 0.96998 * 120.00557 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47489 * 65.12775 * 11 10 8 39 39 H 1.09009 * 109.46783 * 305.12509 * 11 10 8 40 40 H 1.09001 * 109.47219 * 292.91911 * 14 12 11 41 41 H 1.08996 * 109.47398 * 52.92321 * 14 12 11 42 42 H 0.96699 * 114.00125 * 179.97438 * 15 14 12 43 43 H 1.09005 * 109.46935 * 302.72982 * 16 12 11 44 44 H 1.08994 * 109.47188 * 291.82206 * 17 16 12 45 45 H 1.09000 * 109.47082 * 51.82232 * 17 16 12 46 46 H 1.09000 * 109.47061 * 171.82706 * 17 16 12 47 47 H 1.08991 * 109.47200 * 185.23611 * 18 16 12 48 48 H 1.09004 * 109.46999 * 305.24092 * 18 16 12 49 49 H 1.09007 * 109.46827 * 65.23669 * 18 16 12 50 50 H 1.07993 * 119.99962 * 179.72979 * 19 5 4 51 51 H 1.08007 * 119.91531 * 180.30066 * 20 19 5 52 52 H 0.97009 * 120.00052 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3693 0.0005 5 6 1.9332 3.6148 0.0011 6 6 1.1379 4.8507 0.0022 7 6 1.7560 6.0511 0.0022 8 6 0.9646 7.2811 0.0028 9 8 -0.2512 7.2225 0.0028 10 7 1.5815 8.4793 0.0033 11 6 0.7888 9.7113 0.0044 12 6 1.7209 10.9177 -0.1242 13 1 2.4477 10.9035 0.6881 14 6 0.8999 12.2067 -0.0514 15 8 1.7810 13.3308 -0.0055 16 6 2.4541 10.8551 -1.4656 17 6 3.4360 12.0242 -1.5652 18 6 1.4385 10.9435 -2.6065 19 6 3.3320 3.6803 -0.0048 20 6 4.0752 2.5217 0.0009 21 6 3.4405 1.2844 -0.0001 22 8 4.1776 0.1460 -0.0007 23 6 5.5124 0.2815 0.1249 24 1 5.9414 1.2553 0.3090 25 6 6.3354 -0.8300 0.0179 26 7 7.6382 -0.6977 0.1400 27 14 5.5933 -2.5143 -0.3010 28 1 5.5053 -2.7474 -1.7650 29 1 6.4511 -3.5580 0.3157 30 1 4.2337 -2.5767 0.2927 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 0.2156 2.3144 0.0003 35 1 0.0593 4.7987 0.0022 36 1 2.8348 6.1031 0.0018 37 1 2.5504 8.5261 0.0037 38 1 0.2291 9.7824 0.9370 39 1 0.0945 9.6974 -0.8359 40 1 0.2615 12.2812 -0.9318 41 1 0.2812 12.1933 0.8459 42 1 1.3281 14.1839 0.0412 43 1 3.0004 9.9146 -1.5375 44 1 2.8812 12.9594 -1.6395 45 1 4.0668 12.0456 -0.6765 46 1 4.0596 11.9005 -2.4506 47 1 1.9495 10.8057 -3.5593 48 1 0.6845 10.1661 -2.4828 49 1 0.9578 11.9217 -2.5901 50 1 3.8276 4.6398 -0.0088 51 1 5.1540 2.5738 0.0012 52 1 8.2138 -1.4750 0.0648 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253420204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -117.296123 kcal Electronic energy + Delta-G solvation = -31569.431499 eV Core-core repulsion = 27114.523434 eV Total energy + Delta-G solvation = -4454.908065 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.03854 -39.81356 -38.67389 -37.86733 -36.72903 -35.99072 -34.03239 -33.08886 -32.42721 -30.62535 -29.84387 -28.87490 -27.46848 -26.85633 -26.04505 -25.25023 -23.51668 -22.92369 -21.84671 -20.87997 -19.59062 -19.15560 -18.15291 -17.94586 -17.84311 -17.06978 -16.64951 -16.40626 -15.76055 -15.50406 -15.37381 -15.35997 -14.66706 -14.48321 -14.33768 -14.03059 -13.96843 -13.81014 -13.68806 -13.51062 -13.36285 -13.20445 -12.63435 -12.52329 -12.46675 -12.33517 -12.26635 -11.96052 -11.92677 -11.87313 -11.60624 -11.10648 -11.02118 -10.98389 -10.95664 -10.89606 -10.74379 -10.64350 -10.30162 -10.15778 -9.88071 -9.62657 -9.49455 -9.15237 -8.88941 -8.09577 -7.06516 -6.59272 -4.18855 0.92778 1.99511 2.43696 3.07329 3.16212 3.20535 3.38512 3.50559 3.77627 3.85576 4.14526 4.28794 4.36630 4.38815 4.57384 4.60497 4.88617 4.93621 4.96727 4.97505 4.98697 5.07373 5.15195 5.21464 5.27622 5.34879 5.41545 5.43735 5.46518 5.48923 5.57866 5.64813 5.68045 5.70064 5.72052 5.75905 5.87517 5.91524 6.06033 6.08098 6.23709 6.28448 6.33906 6.38126 6.50423 6.75817 6.90226 7.14585 7.17663 7.31405 7.48129 7.49102 7.77452 7.97546 8.27869 8.74405 9.36409 10.46460 Molecular weight = 363.19amu Principal moments of inertia in cm(-1) A = 0.014456 B = 0.001671 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.483612 B =16753.835030 C =18260.286835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.031 3.969 7 C -0.271 4.271 8 C 0.556 3.444 9 O -0.559 6.559 10 N -0.729 5.729 11 C 0.125 3.875 12 C -0.097 4.097 13 H 0.085 0.915 14 C 0.081 3.919 15 O -0.563 6.563 16 C -0.089 4.089 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.063 4.063 20 C -0.209 4.209 21 C 0.154 3.846 22 O -0.189 6.189 23 C -0.387 4.387 24 H 0.110 0.890 25 C 0.067 3.933 26 N -0.865 5.865 27 Si 0.904 3.096 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.253 1.253 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.375 0.625 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.119 0.881 51 H 0.144 0.856 52 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 22.127 -1.653 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.157 4.157 6 C 0.011 3.989 7 C -0.292 4.292 8 C 0.347 3.653 9 O -0.440 6.440 10 N -0.381 5.381 11 C 0.001 3.999 12 C -0.116 4.116 13 H 0.103 0.897 14 C 0.003 3.997 15 O -0.369 6.369 16 C -0.107 4.107 17 C -0.200 4.200 18 C -0.210 4.210 19 C -0.082 4.082 20 C -0.229 4.229 21 C 0.100 3.900 22 O -0.092 6.092 23 C -0.462 4.462 24 H 0.128 0.872 25 C -0.139 4.139 26 N -0.501 5.501 27 Si 0.729 3.271 28 H -0.197 1.197 29 H -0.206 1.206 30 H -0.177 1.177 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.222 0.778 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.137 0.863 51 H 0.161 0.839 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.818 21.050 -1.692 24.704 hybrid contribution -0.176 -0.028 -0.069 0.191 sum -12.994 21.022 -1.761 24.777 Atomic orbital electron populations 1.22936 0.79891 1.03138 1.00664 1.86178 1.19864 1.26368 1.89878 1.18030 0.89252 0.84640 1.07416 1.20895 0.98711 0.90854 1.05111 1.18247 0.92838 0.91485 1.13145 1.22229 0.99177 0.90913 0.86578 1.22515 0.99956 0.91675 1.15074 1.18380 0.87630 0.83872 0.75388 1.90775 1.14244 1.87758 1.51173 1.45793 1.10259 1.05316 1.76755 1.21234 0.93700 0.82669 1.02337 1.21449 0.98027 0.92762 0.99358 0.89697 1.22096 0.91637 0.85862 1.00085 1.86592 1.36485 1.16579 1.97196 1.21082 0.96548 0.99600 0.93518 1.21911 0.98596 0.98840 1.00681 1.21976 0.99179 1.01677 0.98154 1.20990 0.92427 0.97600 0.97138 1.20985 1.01254 0.90519 1.10108 1.18639 0.87743 0.87044 0.96611 1.83605 1.20494 1.27406 1.77646 1.20897 0.77221 0.98550 1.49544 0.87222 1.24523 0.94380 0.99696 0.95283 1.69622 1.02568 1.32360 1.45513 0.86175 0.80365 0.81239 0.79336 1.19679 1.20580 1.17663 0.88943 0.93244 0.93270 0.85660 0.85866 0.85649 0.76419 0.91782 0.90816 0.92852 0.93565 0.77799 0.91184 0.90648 0.92978 0.93774 0.92631 0.92357 0.92570 0.86320 0.83868 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.02 10.28 -34.19 -0.35 -6.37 16 3 C 0.05 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.14 -2.31 8.77 -38.99 -0.34 -2.65 16 5 C -0.16 -2.56 5.87 -105.04 -0.62 -3.18 16 6 C 0.03 0.45 9.45 -37.19 -0.35 0.10 16 7 C -0.27 -3.56 9.41 -37.50 -0.35 -3.91 16 8 C 0.56 7.44 7.74 -13.04 -0.10 7.34 16 9 O -0.56 -9.36 16.23 5.17 0.08 -9.27 16 10 N -0.73 -7.18 5.16 -61.75 -0.32 -7.50 16 11 C 0.12 1.07 4.88 -4.04 -0.02 1.06 16 12 C -0.10 -0.67 2.06 -90.62 -0.19 -0.85 16 13 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 14 C 0.08 0.46 6.12 37.16 0.23 0.69 16 15 O -0.56 -3.22 10.41 -35.23 -0.37 -3.59 16 16 C -0.09 -0.64 2.61 -90.62 -0.24 -0.88 16 17 C -0.14 -1.06 8.14 37.16 0.30 -0.76 16 18 C -0.15 -1.09 8.45 37.16 0.31 -0.77 16 19 C -0.06 -1.08 9.40 -39.12 -0.37 -1.44 16 20 C -0.21 -4.25 9.10 -39.49 -0.36 -4.61 16 21 C 0.15 3.50 6.67 -38.76 -0.26 3.24 16 22 O -0.19 -4.90 8.35 -13.94 -0.12 -5.01 16 23 C -0.39 -10.47 9.89 30.91 0.31 -10.17 16 24 H 0.11 2.97 5.51 -52.49 -0.29 2.68 16 25 C 0.07 1.81 5.49 -17.51 -0.10 1.71 16 26 N -0.87 -23.92 13.96 55.48 0.77 -23.14 16 27 Si 0.90 21.19 28.62 -169.99 -4.86 16.32 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 33 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.13 1.75 6.28 -52.49 -0.33 1.42 16 35 H 0.12 1.76 7.52 -52.49 -0.39 1.36 16 36 H 0.13 1.43 6.06 -52.48 -0.32 1.11 16 37 H 0.40 3.13 7.67 -40.82 -0.31 2.81 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.69 6.24 -51.92 -0.32 0.37 16 40 H 0.05 0.27 6.12 -51.93 -0.32 -0.05 16 41 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.38 0.66 9.12 45.56 0.42 1.08 16 43 H 0.07 0.53 7.09 -51.93 -0.37 0.16 16 44 H 0.07 0.56 5.92 -51.93 -0.31 0.26 16 45 H 0.05 0.41 8.13 -51.93 -0.42 -0.01 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.46 6.19 -51.93 -0.32 0.14 16 49 H 0.06 0.36 6.51 -51.92 -0.34 0.02 16 50 H 0.12 1.67 6.15 -52.49 -0.32 1.35 16 51 H 0.14 2.98 5.70 -52.48 -0.30 2.68 16 52 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 417.58 15.07 6.29 6.29 Total: -1.00 -32.35 417.58 -6.99 -39.34 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.72 Total: 5.87 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.41 Total: -12.94 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.46 Total: -30.64 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.75 Total: -24.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.35 -6.99 -39.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253420204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.954 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds