Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35952 * 116.99598 * 2 1 4 4 C 1.38078 * 120.00370 * 0.02562 * 3 2 1 5 5 C 1.39973 * 119.83609 * 179.97438 * 4 3 2 6 6 C 1.46974 * 120.07584 * 179.97438 * 5 4 3 7 7 C 1.35027 * 119.99917 * 180.02562 * 6 5 4 8 8 C 1.46252 * 120.00067 * 180.02562 * 7 6 5 9 9 O 1.21723 * 119.99609 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00305 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99964 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47044 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47187 * 305.00617 * 12 11 10 14 14 C 1.53005 * 109.46912 * 65.00067 * 12 11 10 15 15 O 1.42900 * 109.47200 * 182.61863 * 14 12 11 16 16 C 1.52995 * 109.47058 * 184.99883 * 12 11 10 17 17 C 1.53001 * 109.47543 * 305.62169 * 16 12 11 18 18 C 1.53003 * 109.47340 * 65.62567 * 16 12 11 19 19 C 1.40028 * 119.84736 * 0.27920 * 5 4 3 20 20 C 1.37646 * 119.99624 * 359.41665 * 19 5 4 21 21 C 1.39059 * 120.16152 * 0.60439 * 20 19 5 22 22 O 1.35612 * 119.91964 * 179.69525 * 21 20 19 23 23 C 1.34756 * 117.00431 * 353.98604 * 22 21 20 24 24 H 1.08004 * 119.99842 * 5.08334 * 23 22 21 25 25 C 1.38711 * 120.00254 * 185.08781 * 23 22 21 26 26 N 1.31522 * 119.99758 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99987 * 359.97438 * 25 23 22 28 28 H 1.48493 * 109.47058 * 90.00441 * 27 25 23 29 29 H 1.48501 * 109.47057 * 210.00379 * 27 25 23 30 30 H 1.48507 * 109.46926 * 329.99998 * 27 25 23 31 31 H 1.09000 * 109.46741 * 60.00267 * 1 2 3 32 32 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46850 * 300.00037 * 1 2 3 34 34 H 1.07999 * 120.07967 * 359.95190 * 4 3 2 35 35 H 1.07999 * 119.99770 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.99853 * 0.02562 * 7 6 5 37 37 H 0.96999 * 119.99642 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47546 * 60.00183 * 11 10 8 39 39 H 1.08997 * 109.47435 * 299.99979 * 11 10 8 40 40 H 1.09005 * 109.47143 * 302.61598 * 14 12 11 41 41 H 1.09004 * 109.47076 * 62.61713 * 14 12 11 42 42 H 0.96694 * 113.99666 * 180.02562 * 15 14 12 43 43 H 1.09006 * 109.47185 * 185.61931 * 16 12 11 44 44 H 1.09002 * 109.46621 * 59.99906 * 17 16 12 45 45 H 1.08998 * 109.47105 * 179.97438 * 17 16 12 46 46 H 1.09007 * 109.46925 * 300.00237 * 17 16 12 47 47 H 1.09004 * 109.46945 * 304.62395 * 18 16 12 48 48 H 1.08992 * 109.47113 * 64.62080 * 18 16 12 49 49 H 1.08996 * 109.47334 * 184.62448 * 18 16 12 50 50 H 1.08004 * 120.00092 * 179.71726 * 19 5 4 51 51 H 1.08004 * 119.91867 * 180.29460 * 20 19 5 52 52 H 0.97000 * 119.99683 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0005 5 6 1.9332 3.6147 0.0011 6 6 1.1379 4.8507 0.0011 7 6 1.7559 6.0512 0.0011 8 6 0.9646 7.2811 0.0016 9 8 -0.2513 7.2225 0.0016 10 7 1.5814 8.4795 0.0022 11 6 0.7887 9.7113 0.0022 12 6 1.7257 10.9209 0.0035 13 1 2.4136 10.8466 0.8456 14 6 2.5210 10.9513 -1.3033 15 8 3.4396 12.0455 -1.2766 16 6 0.9020 12.2040 0.1292 17 6 -0.1582 12.2397 -0.9734 18 6 0.2169 12.2384 1.4968 19 6 3.3319 3.6803 -0.0048 20 6 4.0752 2.5218 0.0010 21 6 3.4405 1.2845 0.0000 22 8 4.1776 0.1462 -0.0005 23 6 5.5125 0.2817 -0.1259 24 1 5.9566 1.2661 -0.1374 25 6 6.3161 -0.8431 -0.2401 26 7 7.6190 -0.7108 -0.3619 27 14 5.5480 -2.5458 -0.2195 28 1 5.2088 -2.9526 -1.6067 29 1 6.5114 -3.5164 0.3594 30 1 4.3134 -2.5219 0.6054 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2156 2.3144 0.0002 35 1 0.0591 4.7987 0.0011 36 1 2.8347 6.1032 0.0007 37 1 2.5503 8.5261 0.0018 38 1 0.1596 9.7387 0.8919 39 1 0.1603 9.7391 -0.8880 40 1 3.0717 10.0172 -1.4154 41 1 1.8361 11.0722 -2.1427 42 1 3.9783 12.1263 -2.0755 43 1 1.5586 13.0685 0.0300 44 1 -0.8147 11.3752 -0.8741 45 1 -0.7452 13.1536 -0.8835 46 1 0.3300 12.2152 -1.9478 47 1 -0.3756 11.3331 1.6292 48 1 0.9724 12.2960 2.2803 49 1 -0.4342 13.1105 1.5552 50 1 3.8276 4.6399 -0.0091 51 1 5.1540 2.5739 0.0012 52 1 8.1809 -1.4974 -0.4422 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253420207.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -120.407145 kcal Electronic energy + Delta-G solvation = -31483.882996 eV Core-core repulsion = 27028.840027 eV Total energy + Delta-G solvation = -4455.042969 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.192 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.04177 -39.81876 -38.58054 -37.87985 -36.73114 -36.11779 -34.31834 -33.09750 -32.43404 -30.28344 -29.84412 -28.87520 -27.65025 -26.87854 -26.15864 -25.32460 -23.57250 -22.86223 -21.86165 -20.93723 -19.88679 -18.93217 -18.15873 -17.95595 -17.84623 -16.94928 -16.68599 -16.10661 -15.86203 -15.54611 -15.38313 -15.29351 -14.70843 -14.59956 -14.51297 -14.18607 -13.98205 -13.82846 -13.76193 -13.48506 -13.30216 -13.21825 -12.94613 -12.54691 -12.49077 -12.34134 -12.22669 -11.96947 -11.96044 -11.75725 -11.61897 -11.28999 -11.11992 -11.00715 -10.90930 -10.85951 -10.78629 -10.76102 -10.31732 -10.29261 -9.87879 -9.62092 -9.50320 -9.16332 -8.89852 -8.10888 -7.07797 -6.60143 -4.19909 0.91228 1.98152 2.42263 3.14956 3.15641 3.20073 3.37407 3.48723 3.73277 3.76622 4.13674 4.27972 4.35623 4.38707 4.54762 4.55293 4.82493 4.88663 4.93789 4.94873 5.00885 5.07335 5.13394 5.19447 5.28074 5.32133 5.35577 5.40712 5.42183 5.47584 5.53600 5.54920 5.59644 5.62610 5.68846 5.71610 5.80170 5.86196 5.98606 6.04493 6.04580 6.27638 6.32508 6.36902 6.48798 6.74115 6.88597 7.12941 7.20278 7.29657 7.46132 7.47906 7.76701 7.96359 8.26171 8.73471 9.35289 10.45537 Molecular weight = 363.19amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.001657 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.934019 B =16892.937763 C =18438.501653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.031 3.969 7 C -0.272 4.272 8 C 0.555 3.445 9 O -0.558 6.558 10 N -0.735 5.735 11 C 0.123 3.877 12 C -0.095 4.095 13 H 0.085 0.915 14 C 0.076 3.924 15 O -0.572 6.572 16 C -0.084 4.084 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.063 4.063 20 C -0.210 4.210 21 C 0.155 3.845 22 O -0.189 6.189 23 C -0.388 4.388 24 H 0.111 0.889 25 C 0.067 3.933 26 N -0.865 5.865 27 Si 0.905 3.095 28 H -0.271 1.271 29 H -0.281 1.281 30 H -0.254 1.254 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.400 0.600 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.380 0.620 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.119 0.881 51 H 0.144 0.856 52 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 20.967 -0.921 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.157 4.157 6 C 0.012 3.988 7 C -0.293 4.293 8 C 0.346 3.654 9 O -0.438 6.438 10 N -0.387 5.387 11 C -0.001 4.001 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.001 4.001 15 O -0.377 6.377 16 C -0.103 4.103 17 C -0.212 4.212 18 C -0.211 4.211 19 C -0.081 4.081 20 C -0.229 4.229 21 C 0.100 3.900 22 O -0.091 6.091 23 C -0.463 4.463 24 H 0.128 0.872 25 C -0.139 4.139 26 N -0.501 5.501 27 Si 0.730 3.270 28 H -0.196 1.196 29 H -0.206 1.206 30 H -0.178 1.178 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.234 0.766 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.227 0.773 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.137 0.863 51 H 0.161 0.839 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.763 20.450 -0.331 24.108 hybrid contribution 0.524 -0.564 -0.606 0.980 sum -12.239 19.886 -0.937 23.369 Atomic orbital electron populations 1.22938 0.79871 1.03151 1.00674 1.86179 1.19882 1.26365 1.89877 1.18038 0.89258 0.84646 1.07390 1.20895 0.98720 0.90850 1.05089 1.18245 0.92836 0.91488 1.13170 1.22240 0.99193 0.90911 0.86500 1.22521 0.99937 0.91706 1.15169 1.18394 0.87653 0.83902 0.75402 1.90778 1.14227 1.87759 1.51049 1.45941 1.10243 1.05612 1.76918 1.21447 0.93687 0.81959 1.02973 1.21420 0.96938 0.94913 0.98104 0.89683 1.22281 0.91390 0.88967 0.97511 1.86450 1.55100 1.51318 1.44866 1.21002 0.96652 0.97174 0.95450 1.21995 0.98723 1.02107 0.98402 1.21949 1.00639 1.02094 0.96396 1.20984 0.92426 0.97583 0.97145 1.20976 1.01246 0.90527 1.10162 1.18622 0.87708 0.87040 0.96616 1.83584 1.20505 1.27545 1.77515 1.20904 0.77242 0.97181 1.50940 0.87184 1.24523 0.94544 0.99757 0.95049 1.69624 1.03210 1.32059 1.45176 0.86162 0.79873 0.81352 0.79626 1.19636 1.20607 1.17762 0.93244 0.88934 0.93249 0.85648 0.85846 0.85673 0.76566 0.90644 0.91108 0.93468 0.93100 0.77293 0.89909 0.92175 0.92564 0.92575 0.92254 0.92583 0.92506 0.86335 0.83876 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -5.99 10.28 -34.20 -0.35 -6.34 16 3 C 0.05 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.14 -2.29 8.77 -38.99 -0.34 -2.63 16 5 C -0.16 -2.54 5.87 -105.04 -0.62 -3.16 16 6 C 0.03 0.45 9.45 -37.19 -0.35 0.10 16 7 C -0.27 -3.52 9.41 -37.51 -0.35 -3.88 16 8 C 0.55 7.37 7.74 -13.04 -0.10 7.27 16 9 O -0.56 -9.30 16.23 5.17 0.08 -9.22 16 10 N -0.73 -7.15 5.25 -61.76 -0.32 -7.47 16 11 C 0.12 1.07 4.26 -4.04 -0.02 1.06 16 12 C -0.09 -0.67 1.92 -90.62 -0.17 -0.85 16 13 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 14 C 0.08 0.50 6.18 37.16 0.23 0.73 16 15 O -0.57 -3.95 13.00 -35.23 -0.46 -4.40 16 16 C -0.08 -0.57 2.63 -90.62 -0.24 -0.81 16 17 C -0.16 -0.99 8.46 37.16 0.31 -0.68 16 18 C -0.15 -1.00 9.06 37.16 0.34 -0.67 16 19 C -0.06 -1.06 9.40 -39.13 -0.37 -1.43 16 20 C -0.21 -4.22 9.14 -39.49 -0.36 -4.58 16 21 C 0.16 3.49 6.67 -38.76 -0.26 3.23 16 22 O -0.19 -4.88 8.35 -13.93 -0.12 -4.99 16 23 C -0.39 -10.44 9.94 30.91 0.31 -10.14 16 24 H 0.11 2.96 5.42 -52.48 -0.28 2.68 16 25 C 0.07 1.80 5.49 -17.51 -0.10 1.71 16 26 N -0.87 -23.83 13.96 55.48 0.77 -23.05 16 27 Si 0.91 21.14 28.62 -169.99 -4.86 16.28 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 31 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.13 1.74 6.28 -52.49 -0.33 1.41 16 35 H 0.12 1.75 7.52 -52.49 -0.39 1.35 16 36 H 0.13 1.40 6.06 -52.48 -0.32 1.08 16 37 H 0.40 3.01 7.63 -40.82 -0.31 2.70 16 38 H 0.08 0.73 6.28 -51.93 -0.33 0.40 16 39 H 0.07 0.67 6.65 -51.93 -0.35 0.32 16 40 H 0.05 0.29 7.12 -51.93 -0.37 -0.08 16 41 H 0.05 0.32 6.47 -51.93 -0.34 -0.02 16 42 H 0.38 1.14 9.12 45.56 0.42 1.55 16 43 H 0.08 0.63 7.60 -51.93 -0.39 0.23 16 44 H 0.06 0.41 6.45 -51.93 -0.34 0.08 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.35 6.53 -51.92 -0.34 0.01 16 47 H 0.06 0.41 6.29 -51.93 -0.33 0.09 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.12 1.64 6.15 -52.48 -0.32 1.32 16 51 H 0.14 2.95 5.62 -52.48 -0.29 2.66 16 52 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 419.44 15.07 6.32 6.32 Total: -1.00 -32.34 419.44 -6.95 -39.29 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.66 Total: 6.18 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -1.36 Total: -12.59 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.45 Total: -30.52 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.84 Total: -24.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.86 Total: 16.28 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.34 -6.95 -39.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253420207.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.117 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds