Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34417 * 125.56117 * 2 1 4 4 C 1.46723 * 106.51795 * 180.21903 * 3 2 1 5 5 C 1.47261 * 126.89015 * 179.77828 * 4 3 2 6 6 O 1.21631 * 120.00075 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99773 * 359.97438 * 5 4 3 8 8 S 1.65602 * 119.99745 * 180.02562 * 7 5 4 9 9 O 1.42098 * 104.27323 * 181.07357 * 8 7 5 10 10 O 1.42102 * 104.27602 * 308.92526 * 8 7 5 11 11 C 1.81391 * 104.45186 * 64.99841 * 8 7 5 12 12 C 1.50694 * 109.47236 * 179.97438 * 11 8 7 13 13 H 1.08003 * 119.99871 * 0.02562 * 12 11 8 14 14 C 1.37880 * 120.00152 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00086 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00051 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47064 * 90.00051 * 16 14 12 18 18 H 1.48499 * 109.47264 * 210.00257 * 16 14 12 19 19 H 1.48498 * 109.46946 * 330.00513 * 16 14 12 20 20 C 1.36738 * 106.22458 * 359.76984 * 4 3 2 21 21 C 1.50702 * 125.85597 * 179.97438 * 20 4 3 22 22 N 1.35515 * 108.28656 * 0.02562 * 20 4 3 23 23 C 1.39776 * 124.95441 * 179.97438 * 22 20 4 24 24 C 1.38949 * 119.68817 * 131.74225 * 23 22 20 25 25 C 1.38415 * 119.10234 * 180.02562 * 24 23 22 26 26 C 1.38806 * 118.48641 * 359.97438 * 25 24 23 27 27 C 1.38111 * 119.29239 * 0.02653 * 26 25 24 28 28 N 1.31901 * 120.84538 * 359.97344 * 27 26 25 29 29 H 1.08993 * 109.46988 * 264.95847 * 1 2 3 30 30 H 1.08994 * 109.47156 * 24.96528 * 1 2 3 31 31 H 1.09005 * 109.46775 * 144.96572 * 1 2 3 32 32 H 1.08003 * 126.74160 * 0.02562 * 3 2 1 33 33 H 0.97002 * 119.99759 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47398 * 300.00218 * 11 8 7 35 35 H 1.09005 * 109.47429 * 59.99952 * 11 8 7 36 36 H 0.97000 * 120.00110 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.47448 * 270.02763 * 21 20 4 38 38 H 1.09004 * 109.46723 * 30.03392 * 21 20 4 39 39 H 1.09008 * 109.46425 * 150.02587 * 21 20 4 40 40 H 1.07991 * 120.45015 * 0.02562 * 24 23 22 41 41 H 1.07998 * 120.75265 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.34966 * 180.02562 * 26 25 24 43 43 H 1.08003 * 119.57447 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2887 1.0935 0.0000 4 6 3.6756 0.6147 -0.0054 5 6 4.8955 1.4396 -0.0119 6 8 5.9893 0.9077 -0.0164 7 7 4.7998 2.7841 -0.0139 8 16 6.1716 3.7117 -0.0219 9 8 5.6907 5.0486 0.0036 10 8 6.9515 3.1932 1.0469 11 6 6.9552 3.3474 -1.6167 12 6 8.2291 4.1423 -1.7438 13 1 8.5368 4.8006 -0.9448 14 6 9.0024 4.0285 -2.8797 15 7 8.6280 3.2266 -3.8524 16 14 10.5819 5.0135 -3.0369 17 1 11.7139 4.2246 -2.4876 18 1 10.8370 5.3148 -4.4684 19 1 10.4504 6.2839 -2.2794 20 6 3.6084 -0.7510 -0.0029 21 6 4.7849 -1.6927 -0.0072 22 7 2.3023 -1.1124 0.0028 23 6 1.8361 -2.4301 0.0063 24 6 0.8526 -2.8097 0.9114 25 6 0.4001 -4.1178 0.9046 26 6 0.9496 -5.0036 -0.0119 27 6 1.9243 -4.5570 -0.8826 28 7 2.3355 -3.3041 -0.8524 29 1 -0.3633 -0.0903 1.0236 30 1 -0.3633 0.9316 -0.4337 31 1 -0.3633 -0.8415 -0.5900 32 1 1.9604 2.1224 0.0004 33 1 3.9275 3.2082 -0.0107 34 1 7.1833 2.2831 -1.6748 35 1 6.2763 3.6180 -2.4255 36 1 9.1718 3.1468 -4.6517 37 1 5.0639 -1.9210 -1.0358 38 1 5.6270 -1.2243 0.5024 39 1 4.5147 -2.6140 0.5090 40 1 0.4467 -2.0939 1.6108 41 1 -0.3637 -4.4416 1.5961 42 1 0.6185 -6.0311 -0.0438 43 1 2.3553 -5.2425 -1.5973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253424866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -22.944742 kcal Electronic energy + Delta-G solvation = -29853.759781 eV Core-core repulsion = 25606.322532 eV Total energy + Delta-G solvation = -4247.437249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.18166 -40.23738 -39.01197 -36.10002 -35.03378 -34.08428 -33.51228 -33.31172 -33.25423 -32.51552 -29.79593 -29.24657 -28.94634 -25.43724 -24.25062 -24.17545 -23.44202 -22.39963 -20.60349 -19.88272 -18.90698 -17.39488 -17.31677 -17.09155 -16.89857 -16.41554 -16.19178 -15.61875 -15.38003 -15.09617 -14.64754 -14.51966 -14.24102 -14.06054 -13.97081 -13.83823 -13.69559 -13.37165 -13.28832 -12.79919 -12.62199 -12.45439 -12.36393 -12.19903 -12.01730 -11.72384 -11.57260 -11.37423 -11.16625 -11.06131 -10.84501 -10.56931 -10.54702 -10.29385 -10.19124 -9.97599 -9.84502 -9.67090 -9.04366 -8.71472 -8.62493 -8.19357 -6.24339 -4.34976 0.28968 0.63147 1.18561 1.63836 2.09565 2.23195 3.14267 3.28024 3.32293 3.37484 3.39167 3.51715 3.91934 4.16250 4.30097 4.30997 4.43174 4.45564 4.54811 4.67220 4.84055 4.90042 4.92967 5.05703 5.09821 5.16287 5.20730 5.30188 5.33846 5.44615 5.49523 5.54066 5.55139 5.67635 5.75981 5.94220 5.97398 6.21980 6.59059 6.67436 6.76234 6.91476 7.03870 7.24734 7.39198 7.51071 7.83358 8.07541 8.66326 9.31542 10.87487 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.002414 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.175223 B =11595.504666 C =12511.029866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.015 3.985 3 C -0.146 4.146 4 C -0.229 4.229 5 C 0.612 3.388 6 O -0.497 6.497 7 N -1.055 6.055 8 S 2.559 3.441 9 O -0.972 6.972 10 O -0.954 6.954 11 C -0.405 4.405 12 C -0.533 4.533 13 H 0.070 0.930 14 C 0.077 3.923 15 N -0.877 5.877 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.141 3.859 21 C -0.092 4.092 22 N -0.397 5.397 23 C 0.336 3.664 24 C -0.164 4.164 25 C -0.058 4.058 26 C -0.175 4.175 27 C 0.125 3.875 28 N -0.482 5.482 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.423 0.577 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.847 -17.171 7.151 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.170 4.170 4 C -0.240 4.240 5 C 0.401 3.599 6 O -0.370 6.370 7 N -0.814 5.814 8 S 2.661 3.339 9 O -0.962 6.962 10 O -0.944 6.944 11 C -0.542 4.542 12 C -0.572 4.572 13 H 0.088 0.912 14 C -0.130 4.130 15 N -0.513 5.513 16 Si 0.732 3.268 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.191 1.191 20 C 0.028 3.972 21 C -0.149 4.149 22 N -0.075 5.075 23 C 0.110 3.890 24 C -0.186 4.186 25 C -0.085 4.085 26 C -0.195 4.195 27 C -0.033 4.033 28 N -0.193 5.193 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.173 0.827 33 H 0.256 0.744 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.264 -17.051 7.150 28.178 hybrid contribution -0.518 0.078 -0.255 0.583 sum -21.782 -16.973 6.895 28.462 Atomic orbital electron populations 1.20396 0.87467 1.03729 1.02520 1.20213 0.93561 0.84251 1.10907 1.21854 0.90533 0.97828 1.06783 1.20094 0.93080 0.91971 1.18888 1.17057 0.88360 0.80962 0.73523 1.90946 1.27714 1.71763 1.46621 1.55240 1.28235 1.16755 1.81131 1.06941 0.73243 0.73152 0.80574 1.93509 1.79338 1.34482 1.88918 1.93521 1.68236 1.79260 1.53373 1.27607 1.07184 1.08216 1.11195 1.20295 1.05169 1.26778 1.04986 0.91181 1.24918 0.98201 0.94928 0.94920 1.69966 1.38514 1.35908 1.06911 0.86358 0.82383 0.80480 0.77626 1.19878 1.20665 1.19098 1.20647 0.83937 0.93882 0.98705 1.20614 0.93834 0.96167 1.04262 1.41054 1.05795 1.02594 1.58050 1.18202 0.93564 0.84693 0.92509 1.21876 0.99235 0.97973 0.99471 1.21550 0.97820 0.92014 0.97070 1.22269 0.98397 1.01613 0.97220 1.22706 0.93154 0.90573 0.96886 1.67218 1.28029 1.03612 1.20461 0.90909 0.89470 0.91872 0.82702 0.74356 0.88225 0.89719 0.92240 0.89375 0.87763 0.92242 0.83919 0.83770 0.83891 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 8.88 36.00 0.32 -0.25 16 2 C 0.01 0.16 6.67 -81.75 -0.55 -0.38 16 3 C -0.15 -1.78 10.43 -37.51 -0.39 -2.17 16 4 C -0.23 -3.61 6.29 -103.35 -0.65 -4.26 16 5 C 0.61 11.58 7.55 -12.59 -0.10 11.49 16 6 O -0.50 -11.03 12.91 -11.87 -0.15 -11.18 16 7 N -1.05 -18.91 5.60 30.40 0.17 -18.74 16 8 S 2.56 58.39 5.03 -107.50 -0.54 57.85 16 9 O -0.97 -23.10 18.08 -57.54 -1.04 -24.14 16 10 O -0.95 -24.69 17.04 -64.79 -1.10 -25.79 16 11 C -0.41 -10.53 5.64 36.00 0.20 -10.32 16 12 C -0.53 -15.38 9.13 -34.44 -0.31 -15.69 16 13 H 0.07 1.97 7.71 -52.48 -0.40 1.56 16 14 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 15 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 16 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 20 C 0.14 2.10 6.84 -81.51 -0.56 1.54 16 21 C -0.09 -1.30 9.05 36.01 0.33 -0.98 16 22 N -0.40 -4.92 2.87 -54.14 -0.16 -5.08 16 23 C 0.34 3.53 6.06 -154.41 -0.94 2.60 16 24 C -0.16 -1.18 8.68 -39.25 -0.34 -1.52 16 25 C -0.06 -0.28 10.17 -39.31 -0.40 -0.68 16 26 C -0.17 -0.82 10.11 -39.42 -0.40 -1.22 16 27 C 0.12 0.87 11.18 -17.57 -0.20 0.67 16 28 N -0.48 -5.14 9.50 -12.30 -0.12 -5.26 16 29 H 0.07 0.37 7.74 -51.93 -0.40 -0.03 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 7.64 -51.93 -0.40 0.03 16 32 H 0.16 1.43 7.69 -52.48 -0.40 1.03 16 33 H 0.42 5.79 7.90 -34.48 -0.27 5.52 16 34 H 0.10 2.71 7.19 -51.92 -0.37 2.34 16 35 H 0.08 2.13 8.14 -51.92 -0.42 1.71 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.10 1.64 6.47 -51.93 -0.34 1.31 16 39 H 0.06 0.74 7.58 -51.92 -0.39 0.34 16 40 H 0.14 0.83 7.15 -52.49 -0.38 0.46 16 41 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 43 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -39.33 381.26 -10.58 -49.91 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.03 Total: 4.16 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -4.07 Total: -19.09 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.63 Total: -54.14 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: -2.30 Total: -61.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 58.39 SS G_CDS: -0.54 Total: 57.85 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.33 -10.58 -49.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253424866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -39.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds