Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46603 * 2 1 4 4 C 1.36704 * 119.99779 * 95.30142 * 3 2 1 5 5 H 1.08000 * 119.99878 * 307.93245 * 4 3 2 6 6 C 1.38884 * 120.00265 * 127.93808 * 4 3 2 7 7 N 1.31517 * 120.00398 * 165.65049 * 6 4 3 8 8 Si 1.86800 * 119.99748 * 345.64197 * 6 4 3 9 9 H 1.48500 * 109.47278 * 95.24767 * 8 6 4 10 10 H 1.48500 * 109.47146 * 215.24506 * 8 6 4 11 11 H 1.48496 * 109.47212 * 335.24566 * 8 6 4 12 12 C 1.38811 * 120.00325 * 275.29573 * 3 2 1 13 13 C 1.39379 * 119.92475 * 359.73241 * 12 3 2 14 14 C 1.36604 * 120.07113 * 179.71869 * 13 12 3 15 15 C 1.39991 * 119.92416 * 0.56979 * 14 13 12 16 16 N 1.36371 * 120.06771 * 179.67615 * 15 14 13 17 17 N 1.28994 * 120.00535 * 0.02814 * 16 15 14 18 18 C 1.36614 * 120.00415 * 180.02562 * 17 16 15 19 19 C 1.39790 * 120.16325 * 359.71609 * 18 17 16 20 20 C 1.37976 * 119.83153 * 179.79029 * 19 18 17 21 21 Cl 1.73602 * 119.91477 * 180.23157 * 20 19 18 22 22 C 1.38556 * 120.17179 * 0.49493 * 20 19 18 23 23 C 1.38316 * 120.33211 * 359.73562 * 22 20 19 24 24 C 1.38075 * 120.16644 * 0.02971 * 23 22 20 25 25 Cl 1.73594 * 120.08464 * 179.97438 * 24 23 22 26 26 C 1.39995 * 119.85743 * 359.70275 * 15 14 13 27 27 C 1.36604 * 119.92185 * 359.97438 * 26 15 14 28 28 H 1.09001 * 109.47251 * 55.03433 * 1 2 3 29 29 H 1.09009 * 109.46793 * 175.03197 * 1 2 3 30 30 H 1.08992 * 109.47741 * 295.03020 * 1 2 3 31 31 H 1.09000 * 109.47451 * 120.00075 * 2 1 3 32 32 H 1.09000 * 109.47284 * 240.00705 * 2 1 3 33 33 H 0.96994 * 120.00430 * 180.02562 * 7 6 4 34 34 H 1.08004 * 119.96179 * 359.97151 * 13 12 3 35 35 H 1.08003 * 120.03353 * 180.25209 * 14 13 12 36 36 H 1.08007 * 120.08170 * 0.02562 * 19 18 17 37 37 H 1.07996 * 119.83347 * 179.71982 * 22 20 19 38 38 H 1.07999 * 119.91410 * 180.02562 * 23 22 20 39 39 H 1.07996 * 120.03459 * 179.97438 * 26 15 14 40 40 H 1.07997 * 119.95796 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3491 1.9892 1.1789 5 1 1.6463 1.9958 1.9989 6 6 3.5889 2.5985 1.3220 7 7 3.8073 3.4169 2.3280 8 14 4.9465 2.2553 0.0855 9 1 4.9475 3.3146 -0.9552 10 1 6.2583 2.2437 0.7813 11 1 4.7128 0.9348 -0.5523 12 6 2.1449 2.0727 -1.1970 13 6 1.8125 1.4495 -2.3985 14 6 1.9306 2.1290 -3.5777 15 6 2.3974 3.4488 -3.5794 16 7 2.5227 4.1276 -4.7554 17 7 2.2104 3.5540 -5.8678 18 6 2.3364 4.2339 -7.0460 19 6 2.7978 5.5535 -7.0496 20 6 2.9266 6.2324 -8.2439 21 17 3.5051 7.8691 -8.2514 22 6 2.5902 5.6129 -9.4368 23 6 2.1285 4.3091 -9.4409 24 6 1.9988 3.6152 -8.2542 25 17 1.4185 1.9792 -8.2618 26 6 2.7358 4.0699 -2.3713 27 6 2.6091 3.3869 -1.1950 28 1 -0.3634 0.5889 -0.8422 29 1 -0.3633 -1.0239 -0.0890 30 1 -0.3634 0.4348 0.9310 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 4.6731 3.8427 2.4278 34 1 1.4573 0.4295 -2.3969 35 1 1.6690 1.6468 -4.5080 36 1 3.0564 6.0391 -6.1202 37 1 2.6889 6.1509 -10.3680 38 1 1.8687 3.8327 -10.3746 39 1 3.0966 5.0878 -2.3693 40 1 2.8696 3.8657 -0.2627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254349337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = 106.498447 kcal Electronic energy + Delta-G solvation = -26320.888498 eV Core-core repulsion = 22381.896690 eV Total energy + Delta-G solvation = -3938.991807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.060 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.70048 -39.37526 -37.42204 -36.72432 -36.14761 -35.41768 -33.17208 -31.93402 -30.73327 -30.60128 -30.17313 -28.30598 -25.79623 -24.66286 -23.04230 -22.32749 -21.91442 -20.99944 -19.81162 -18.45908 -17.51253 -16.70225 -16.04392 -15.84680 -15.70700 -14.98939 -14.79896 -14.39179 -14.13119 -13.97172 -13.77897 -13.63141 -13.26587 -13.23418 -12.89018 -12.79599 -12.62949 -12.39706 -12.29482 -12.06784 -11.79833 -11.71733 -11.57279 -11.13449 -11.06143 -10.94959 -10.82629 -10.73009 -10.63669 -10.35279 -10.18295 -9.70413 -9.20773 -8.78861 -8.40094 -8.34764 -8.24724 -6.93532 -6.54476 -4.49883 0.04905 0.99084 1.65921 1.95766 2.18501 2.28297 2.88607 3.02731 3.10216 3.14385 3.75858 3.84030 3.96954 4.02375 4.43057 4.66297 4.69273 4.88219 5.12480 5.29309 5.30759 5.43919 5.54986 5.58593 5.61174 5.70978 5.80772 5.92208 6.00853 6.02583 6.03210 6.10815 6.19189 6.29041 6.42980 6.48703 6.66106 6.71340 6.95203 7.05263 7.21726 7.27359 7.55430 7.69959 8.12992 8.63602 8.75085 8.87211 10.15078 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.002613 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.567571 B =10714.652880 C =12354.309277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.094 3.906 3 N -0.419 5.419 4 C -0.334 4.334 5 H 0.110 0.890 6 C 0.075 3.925 7 N -0.839 5.839 8 Si 0.873 3.127 9 H -0.244 1.244 10 H -0.284 1.284 11 H -0.263 1.263 12 C 0.241 3.759 13 C -0.239 4.239 14 C -0.013 4.013 15 C -0.074 4.074 16 N -0.164 5.164 17 N -0.335 5.335 18 C 0.134 3.866 19 C -0.128 4.128 20 C -0.019 4.019 21 Cl -0.073 7.073 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.023 4.023 25 Cl -0.054 7.054 26 C 0.010 3.990 27 C -0.209 4.209 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.285 0.715 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.123 0.877 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -0.236 -15.252 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.029 4.029 3 N -0.100 5.100 4 C -0.463 4.463 5 H 0.127 0.873 6 C -0.137 4.137 7 N -0.469 5.469 8 Si 0.697 3.303 9 H -0.168 1.168 10 H -0.211 1.211 11 H -0.187 1.187 12 C 0.117 3.883 13 C -0.264 4.264 14 C -0.038 4.038 15 C -0.195 4.195 16 N -0.034 5.034 17 N -0.210 5.210 18 C 0.027 3.973 19 C -0.152 4.152 20 C -0.047 4.047 21 Cl -0.044 7.044 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.055 4.055 25 Cl -0.024 7.024 26 C -0.015 4.015 27 C -0.233 4.233 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.141 0.859 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.440 -0.250 -14.904 15.105 hybrid contribution 0.808 -0.087 -0.394 0.903 sum -1.633 -0.336 -15.298 15.389 Atomic orbital electron populations 1.22140 0.96016 1.01394 1.02841 1.21843 0.94569 0.83958 1.02507 1.43082 1.53599 1.09368 1.03999 1.19182 1.01200 1.34557 0.91340 0.87267 1.25730 0.97889 0.93840 0.96222 1.69740 1.25051 1.23101 1.29032 0.87015 0.80446 0.81536 0.81302 1.16819 1.21095 1.18691 1.18614 0.91890 0.90827 0.86925 1.20307 1.13681 1.01135 0.91311 1.21316 0.91216 0.93620 0.97648 1.18312 1.17106 0.94408 0.89712 1.71822 1.01433 1.32816 0.97354 1.73088 1.22210 1.30586 0.95134 1.18729 0.96504 0.90358 0.91748 1.21795 1.00973 0.94425 0.98026 1.20895 1.02034 0.86695 0.95046 1.98367 1.87297 1.19790 1.98945 1.20895 1.01865 0.94724 0.97016 1.20788 0.99689 0.93702 0.96753 1.20702 1.04083 0.87734 0.92954 1.98355 1.86729 1.18542 1.98820 1.20453 0.92640 0.98502 0.89880 1.20657 1.09207 0.94292 0.99164 0.92201 0.92292 0.92132 0.89803 0.91443 0.90456 0.86263 0.85432 0.83385 0.84449 0.84011 0.85949 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.12 37.16 0.38 -1.90 16 2 C 0.09 1.50 5.74 -4.04 -0.02 1.48 16 3 N -0.42 -8.36 2.06 -113.11 -0.23 -8.59 16 4 C -0.33 -7.61 9.23 -15.14 -0.14 -7.75 16 5 H 0.11 2.65 8.06 -52.49 -0.42 2.23 16 6 C 0.08 1.77 3.88 -17.45 -0.07 1.70 16 7 N -0.84 -20.76 13.96 55.49 0.77 -19.98 16 8 Si 0.87 18.90 24.48 -169.99 -4.16 14.74 16 9 H -0.24 -5.22 6.00 56.52 0.34 -4.88 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 12 C 0.24 4.81 5.01 -83.85 -0.42 4.39 16 13 C -0.24 -4.33 8.74 -39.75 -0.35 -4.67 16 14 C -0.01 -0.24 9.42 -39.52 -0.37 -0.62 16 15 C -0.07 -1.43 6.68 -84.53 -0.56 -1.99 16 16 N -0.16 -3.12 10.03 32.21 0.32 -2.79 16 17 N -0.33 -6.12 9.45 32.19 0.30 -5.81 16 18 C 0.13 2.18 6.67 -84.54 -0.56 1.61 16 19 C -0.13 -1.92 9.25 -39.10 -0.36 -2.28 16 20 C -0.02 -0.24 6.31 -39.56 -0.25 -0.49 16 21 Cl -0.07 -0.84 28.95 -51.86 -1.50 -2.35 16 22 C -0.12 -1.34 9.82 -39.44 -0.39 -1.73 16 23 C -0.09 -0.99 9.81 -39.61 -0.39 -1.38 16 24 C -0.02 -0.32 6.36 -39.03 -0.25 -0.57 16 25 Cl -0.05 -0.72 28.46 -51.86 -1.48 -2.20 16 26 C 0.01 0.19 9.76 -39.51 -0.39 -0.20 16 27 C -0.21 -4.30 5.79 -39.75 -0.23 -4.53 16 28 H 0.06 0.86 7.76 -51.93 -0.40 0.46 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 32 H 0.07 0.98 6.46 -51.93 -0.34 0.65 16 33 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.12 1.88 6.16 -52.48 -0.32 1.55 16 35 H 0.13 2.25 7.37 -52.48 -0.39 1.86 16 36 H 0.15 2.30 7.38 -52.48 -0.39 1.91 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.15 3.23 5.02 -52.49 -0.26 2.97 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -24.81 365.17 -9.09 -33.90 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.25 Total: 6.52 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -4.37 Total: -18.94 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.17 Total: -37.18 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.16 Total: 14.74 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.98 Total: -4.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -24.81 -9.09 -33.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254349337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.400 kcal (2) G-P(sol) polarization free energy of solvation -24.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds