Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48499 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47004 * 300.00667 * 3 2 1 6 6 H 1.48504 * 109.46739 * 60.00238 * 3 2 1 7 7 C 1.37878 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00204 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00274 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47574 * 179.97438 * 9 7 2 11 11 C 1.34647 * 125.25822 * 124.71619 * 10 9 7 12 12 C 1.36757 * 108.04812 * 179.83642 * 11 10 9 13 13 C 1.47438 * 126.68524 * 180.13372 * 12 11 10 14 14 N 1.29776 * 119.99860 * 4.82904 * 13 12 11 15 15 N 1.40098 * 119.99617 * 185.00312 * 14 13 12 16 16 C 1.34778 * 119.99849 * 174.98524 * 15 14 13 17 17 N 1.34778 * 120.00112 * 5.12954 * 16 15 14 18 18 S 1.71201 * 120.00096 * 185.12589 * 16 15 14 19 19 C 1.46469 * 106.62470 * 0.41907 * 12 11 10 20 20 C 1.48268 * 126.48951 * 179.74112 * 19 12 11 21 21 C 1.39394 * 120.11682 * 318.42639 * 20 19 12 22 22 C 1.37974 * 119.88659 * 179.70259 * 21 20 19 23 23 C 1.38456 * 120.11312 * 0.59339 * 22 21 20 24 24 Cl 1.73597 * 119.88608 * 179.70103 * 23 22 21 25 25 C 1.38443 * 120.22793 * 359.67827 * 23 22 21 26 26 C 1.37991 * 120.11305 * 0.02562 * 25 23 22 27 27 N 1.31531 * 107.01626 * 359.74163 * 19 12 11 28 28 H 0.96992 * 120.00323 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47404 * 59.99439 * 9 7 2 30 30 H 1.09003 * 109.46964 * 300.00265 * 9 7 2 31 31 H 1.08005 * 125.97426 * 359.97072 * 11 10 9 32 32 H 1.07998 * 120.00066 * 184.82225 * 13 12 11 33 33 H 0.96998 * 120.00458 * 354.98757 * 15 14 13 34 34 H 0.97000 * 119.99710 * 5.07595 * 17 16 15 35 35 H 0.96997 * 120.00177 * 185.07532 * 17 16 15 36 36 H 1.08006 * 120.05198 * 359.96739 * 21 20 19 37 37 H 1.08004 * 119.94956 * 180.27100 * 22 21 20 38 38 H 1.08000 * 119.94608 * 180.02562 * 25 23 22 39 39 H 1.07995 * 120.05337 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.2322 -4.6112 0.9002 12 6 3.2539 -5.4560 0.5647 13 6 3.6493 -6.6858 1.2754 14 7 2.9445 -7.1104 2.2789 15 7 3.3769 -8.2180 3.0198 16 6 2.7001 -8.5974 4.1219 17 7 1.5505 -7.9772 4.4536 18 16 3.3008 -9.8673 5.1004 19 6 3.8831 -4.8974 -0.6342 20 6 5.0418 -5.4625 -1.3666 21 6 6.1258 -5.9860 -0.6638 22 6 7.1988 -6.5163 -1.3502 23 6 7.2055 -6.5180 -2.7347 24 17 8.5621 -7.1797 -3.5923 25 6 6.1340 -5.9942 -3.4375 26 6 5.0532 -5.4670 -2.7606 27 7 3.2256 -3.7994 -0.9379 28 1 -0.4850 0.8399 0.0004 29 1 0.6247 -2.5564 -0.8919 30 1 0.6241 -2.5575 0.8880 31 1 1.5640 -4.7260 1.7409 32 1 4.5254 -7.2333 0.9608 33 1 4.1633 -8.7119 2.7396 34 1 1.1716 -7.3089 3.8613 35 1 1.1019 -8.1990 5.2845 36 1 6.1238 -5.9804 0.4163 37 1 8.0373 -6.9262 -0.8066 38 1 6.1438 -5.9982 -4.5175 39 1 4.2177 -5.0590 -3.3098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254845692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 121.030896 kcal Electronic energy + Delta-G solvation = -25679.159410 eV Core-core repulsion = 21775.134235 eV Total energy + Delta-G solvation = -3904.025175 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.062 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.02550 -40.05391 -39.93644 -37.45013 -36.81385 -35.69895 -34.06236 -33.46625 -32.11142 -31.57041 -30.64329 -28.75557 -25.84897 -25.29101 -24.00147 -23.66619 -22.93353 -21.49290 -21.03602 -20.12956 -18.76320 -18.68939 -18.21633 -17.65833 -17.20651 -16.65015 -16.56652 -16.41948 -16.10397 -15.81042 -15.59642 -15.17953 -14.70848 -14.58970 -14.48277 -14.25125 -14.07350 -13.76380 -13.20035 -12.96290 -12.80564 -12.73164 -12.58254 -12.53667 -12.49351 -12.31604 -11.87119 -11.74842 -11.57997 -11.46976 -10.82067 -10.77753 -10.53231 -10.04935 -9.59033 -9.30170 -9.10334 -8.84236 -8.36433 -6.49663 -0.27679 -0.03383 0.31111 0.46535 0.69816 1.14328 1.21944 1.35747 1.39700 1.48939 1.52095 1.70470 2.06396 2.32575 2.39797 2.67482 2.97058 3.28715 3.54429 3.76511 3.89073 3.94464 4.05595 4.23988 4.29363 4.41476 4.61195 4.66733 4.88385 4.89920 4.92698 4.98425 5.08619 5.21737 5.21950 5.46262 5.50592 5.56136 5.60141 5.73250 5.78561 6.05060 6.30924 6.58990 6.75238 6.82667 7.20951 8.71085 Molecular weight = 363.06amu Principal moments of inertia in cm(-1) A = 0.004514 B = 0.003494 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 6201.189835 B = 8012.265392 C =13625.384077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.267 3.733 10 N -0.341 5.341 11 C 0.116 3.884 12 C -0.232 4.232 13 C 0.231 3.769 14 N -0.324 5.324 15 N -0.525 5.525 16 C 0.630 3.370 17 N -0.764 5.764 18 S -0.730 6.730 19 C 0.123 3.877 20 C -0.016 4.016 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.035 4.035 24 Cl -0.067 7.067 25 C -0.109 4.109 26 C -0.088 4.088 27 N -0.298 5.298 28 H 0.272 0.728 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.204 0.796 32 H 0.154 0.846 33 H 0.421 0.579 34 H 0.420 0.580 35 H 0.438 0.562 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 -13.190 -2.361 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.148 3.852 10 N -0.118 5.118 11 C -0.037 4.037 12 C -0.247 4.247 13 C 0.023 3.977 14 N -0.132 5.132 15 N -0.247 5.247 16 C 0.263 3.737 17 N -0.307 5.307 18 S -0.607 6.607 19 C -0.046 4.046 20 C -0.018 4.018 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.062 4.062 24 Cl -0.038 7.038 25 C -0.127 4.127 26 C -0.107 4.107 27 N -0.118 5.118 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.220 0.780 32 H 0.170 0.830 33 H 0.266 0.734 34 H 0.255 0.745 35 H 0.274 0.726 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.632 -12.569 -2.120 15.394 hybrid contribution 0.418 0.879 -0.632 1.161 sum 9.050 -11.690 -2.752 15.038 Atomic orbital electron populations 1.69970 1.07083 1.28701 1.49884 1.25626 0.95717 1.02460 0.93970 0.85408 0.78615 0.78929 0.78167 1.19819 1.20207 1.19725 1.21393 0.93438 0.90833 1.52779 0.92723 1.19452 0.85689 0.81367 0.98681 1.49043 1.23653 1.20065 1.18997 1.23249 0.98199 0.87476 0.94745 1.19102 1.04166 0.99876 1.01587 1.23551 0.94565 0.90854 0.88777 1.74671 1.25293 1.02608 1.10584 1.46015 1.28509 1.27206 1.22971 1.21341 0.83447 0.86220 0.82716 1.42830 1.20502 1.40620 1.26730 1.93976 1.79307 1.31821 1.55631 1.22139 0.95809 0.92453 0.94231 1.17933 0.91776 0.99406 0.92648 1.21293 0.91279 0.96590 1.01175 1.21217 0.99529 0.99695 0.91759 1.21184 0.90515 1.01377 0.93171 1.98380 1.43937 1.84221 1.77301 1.21127 0.91923 0.98237 1.01426 1.21252 0.98606 0.97792 0.93076 1.77520 1.01577 1.17924 1.14795 0.91862 0.95519 0.91928 0.77957 0.82961 0.73421 0.74488 0.72599 0.82813 0.82069 0.83215 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.39 13.29 21.45 0.28 -48.11 16 2 C 0.02 1.19 5.46 84.65 0.46 1.65 16 3 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.55 -27.78 9.21 25.60 0.24 -27.54 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.27 11.93 6.22 85.63 0.53 12.46 16 10 N -0.34 -12.84 3.64 -350.84 -1.28 -14.11 16 11 C 0.12 3.29 11.11 83.91 0.93 4.22 16 12 C -0.23 -5.65 6.23 -19.06 -0.12 -5.77 16 13 C 0.23 3.89 10.32 87.42 0.90 4.80 16 14 N -0.32 -5.52 10.13 -52.19 -0.53 -6.05 16 15 N -0.53 -8.88 6.26 -59.11 -0.37 -9.25 16 16 C 0.63 12.71 8.13 179.05 1.45 14.17 16 17 N -0.76 -10.74 8.81 -59.11 -0.52 -11.26 16 18 S -0.73 -21.62 30.88 -56.49 -1.74 -23.36 16 19 C 0.12 3.54 6.88 44.00 0.30 3.84 16 20 C -0.02 -0.35 5.80 -20.05 -0.12 -0.47 16 21 C -0.08 -1.38 8.64 22.49 0.19 -1.19 16 22 C -0.10 -1.50 9.81 22.26 0.22 -1.28 16 23 C -0.04 -0.59 6.32 22.37 0.14 -0.45 16 24 Cl -0.07 -1.05 28.95 -2.72 -0.08 -1.13 16 25 C -0.11 -1.95 9.81 22.26 0.22 -1.73 16 26 C -0.09 -1.92 9.78 22.49 0.22 -1.70 16 27 N -0.30 -11.26 12.33 -44.56 -0.55 -11.81 16 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 2.72 8.05 -2.39 -0.02 2.70 16 31 H 0.20 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.15 1.65 6.51 -2.91 -0.02 1.63 16 33 H 0.42 6.02 8.64 -213.32 -1.84 4.18 16 34 H 0.42 4.88 7.91 -92.71 -0.73 4.15 16 35 H 0.44 4.95 8.81 -92.71 -0.82 4.13 16 36 H 0.15 1.89 7.03 -2.91 -0.02 1.87 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 39 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -67.22 382.32 0.58 -66.63 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -2.24 Total: 14.57 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.58 Total: 1.01 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -2.96 Total: -100.59 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: -21.62 SS G_CDS: -1.74 Total: -23.36 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -67.22 0.58 -66.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254845692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.664 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds