Wall clock time and date at job start Tue Mar 31 2020 06:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99806 * 2 1 4 4 H 1.48502 * 109.47171 * 240.00058 * 3 2 1 5 5 H 1.48503 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46816 * 120.00203 * 3 2 1 7 7 C 1.37873 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.34375 * 119.13826 * 89.99478 * 10 9 7 12 12 O 1.21822 * 119.55441 * 0.02562 * 11 10 9 13 13 C 1.46229 * 120.88837 * 179.97438 * 11 10 9 14 14 C 1.46817 * 120.47417 * 180.02562 * 13 11 10 15 15 O 1.21677 * 119.99614 * 75.41373 * 14 13 11 16 16 N 1.34771 * 119.99889 * 255.41277 * 14 13 11 17 17 C 1.46500 * 119.99782 * 185.12605 * 16 14 13 18 18 C 1.53006 * 109.47159 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47016 * 180.02562 * 18 17 16 20 20 Cl 1.80312 * 109.46759 * 180.02562 * 19 18 17 21 21 C 1.39680 * 119.04859 * 0.02562 * 13 11 10 22 22 O 1.34938 * 120.86486 * 179.97438 * 21 13 11 23 23 C 1.46656 * 118.27495 * 359.97438 * 21 13 11 24 24 C 1.39971 * 120.58857 * 180.02562 * 23 21 13 25 25 C 1.36586 * 119.82058 * 179.25229 * 24 23 21 26 26 C 1.38804 * 120.49422 * 0.73696 * 25 24 23 27 27 C 1.37784 * 120.65737 * 359.49378 * 26 25 24 28 28 C 1.37974 * 119.13283 * 269.72866 * 10 9 7 29 29 H 0.96993 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46832 * 299.99931 * 9 7 2 31 31 H 1.08998 * 109.47319 * 59.99906 * 9 7 2 32 32 H 0.96999 * 120.00431 * 5.12882 * 16 14 13 33 33 H 1.08998 * 109.47046 * 299.99818 * 17 16 14 34 34 H 1.08994 * 109.47210 * 60.00107 * 17 16 14 35 35 H 1.08995 * 109.47139 * 300.00330 * 18 17 16 36 36 H 1.09004 * 109.46940 * 59.99884 * 18 17 16 37 37 H 1.08998 * 109.47102 * 299.99728 * 19 18 17 38 38 H 1.08994 * 109.47297 * 60.00104 * 19 18 17 39 39 H 0.96699 * 113.99889 * 5.17118 * 22 21 13 40 40 H 1.07997 * 120.08494 * 359.97438 * 24 23 21 41 41 H 1.08009 * 119.74840 * 180.23038 * 25 24 23 42 42 H 1.07995 * 119.67171 * 179.51581 * 26 25 24 43 43 H 1.07997 * 120.05105 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6284 -4.1099 1.1732 12 8 2.2167 -3.6290 2.2140 13 6 3.5777 -5.2212 1.2178 14 6 4.0359 -5.7578 2.5053 15 8 3.2992 -6.4656 3.1662 16 7 5.2725 -5.4664 2.9551 17 6 5.7713 -6.0907 4.1830 18 6 7.1895 -5.5925 4.4687 19 6 7.7106 -6.2450 5.7507 20 17 9.3816 -5.6573 6.0878 21 6 4.0424 -5.7649 0.0180 22 8 4.9193 -6.7905 0.0164 23 6 3.5525 -5.1920 -1.2400 24 6 3.9859 -5.6999 -2.4703 25 6 3.5078 -5.1646 -3.6324 26 6 2.6061 -4.1097 -3.6034 27 6 2.1698 -3.5911 -2.4038 28 6 2.6353 -4.1269 -1.2057 29 1 -0.4849 0.8400 0.0004 30 1 0.6248 -2.5570 0.8897 31 1 0.6241 -2.5567 -0.8902 32 1 5.8322 -4.8432 2.4660 33 1 5.1192 -5.8268 5.0156 34 1 5.7841 -7.1737 4.0606 35 1 7.8418 -5.8560 3.6362 36 1 7.1763 -4.5094 4.5913 37 1 7.0584 -5.9819 6.5834 38 1 7.7239 -7.3279 5.6277 39 1 5.1151 -7.1419 0.8958 40 1 4.6874 -6.5204 -2.5005 41 1 3.8401 -5.5598 -4.5811 42 1 2.2426 -3.6915 -4.5304 43 1 1.4684 -2.7700 -2.3927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299738196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:09 Heat of formation + Delta-G solvation = -86.135302 kcal Electronic energy + Delta-G solvation = -30141.401990 eV Core-core repulsion = 25791.462224 eV Total energy + Delta-G solvation = -4349.939766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11451 -39.61833 -38.56493 -37.88343 -36.73111 -35.58448 -35.19801 -33.40511 -32.64797 -32.19136 -30.23704 -29.41188 -27.58965 -26.47578 -24.34200 -23.70925 -22.68739 -22.18058 -21.24833 -20.86203 -18.95733 -18.56691 -18.04041 -16.82069 -16.41692 -16.27944 -16.18121 -15.79181 -15.25512 -14.98659 -14.71429 -14.54413 -14.44861 -14.14316 -14.08503 -13.97704 -13.81150 -13.45881 -13.32984 -13.05750 -12.81691 -12.65477 -12.35142 -11.94003 -11.68221 -11.55800 -11.49529 -11.22005 -10.97868 -10.93513 -10.74968 -10.67155 -10.45457 -10.27025 -10.08211 -9.61346 -9.41430 -9.30930 -9.24795 -8.59684 -8.22241 -7.50085 -6.22107 -4.28819 0.55719 1.48388 1.80978 1.98137 2.42466 3.01299 3.20070 3.23735 3.28658 3.31054 3.47003 3.52178 4.17902 4.33036 4.33218 4.35167 4.44318 4.61693 4.73212 4.90818 4.93762 4.96131 5.03597 5.13152 5.14773 5.26442 5.43506 5.55448 5.57493 5.59328 5.68197 5.82323 6.01533 6.21953 6.29641 6.43116 6.58347 6.75995 6.93304 7.02891 7.11522 7.20729 7.32213 7.71856 7.91580 7.96057 8.13046 8.62641 8.75593 9.36590 10.86167 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.002938 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.469898 B = 9528.969382 C =11522.268616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.225 3.775 10 N -0.503 5.503 11 C 0.565 3.435 12 O -0.517 6.517 13 C -0.357 4.357 14 C 0.591 3.409 15 O -0.519 6.519 16 N -0.728 5.728 17 C 0.119 3.881 18 C -0.145 4.145 19 C -0.028 4.028 20 Cl -0.184 7.184 21 C 0.266 3.734 22 O -0.453 6.453 23 C -0.154 4.154 24 C -0.043 4.043 25 C -0.171 4.171 26 C -0.058 4.058 27 C -0.154 4.154 28 C 0.239 3.761 29 H 0.268 0.732 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.405 0.595 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.403 0.597 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 -14.310 -1.254 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.216 5.216 11 C 0.359 3.641 12 O -0.394 6.394 13 C -0.366 4.366 14 C 0.377 3.623 15 O -0.394 6.394 16 N -0.383 5.383 17 C -0.005 4.005 18 C -0.183 4.183 19 C -0.092 4.092 20 Cl -0.157 7.157 21 C 0.213 3.787 22 O -0.254 6.254 23 C -0.158 4.158 24 C -0.062 4.062 25 C -0.190 4.190 26 C -0.077 4.077 27 C -0.174 4.174 28 C 0.132 3.868 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.257 0.743 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.639 -14.286 -0.605 19.761 hybrid contribution 0.885 1.175 0.485 1.549 sum 14.524 -13.111 -0.120 19.567 Atomic orbital electron populations 1.69910 1.06001 1.27643 1.49142 1.24894 0.94923 0.99306 0.94490 0.86478 0.79526 0.82194 0.78848 1.19967 1.20964 1.20040 1.21175 0.93349 0.89797 1.52844 0.92141 1.19866 0.87528 0.81569 1.00240 1.45900 1.40652 1.31844 1.03172 1.16973 0.81338 0.82174 0.83632 1.90894 1.57134 1.60406 1.31008 1.21752 1.13700 1.09219 0.91912 1.17362 0.80688 0.79619 0.84667 1.90809 1.53575 1.37497 1.57509 1.46068 1.16879 1.48106 1.27214 1.21270 0.93589 0.97762 0.87892 1.22111 0.96000 1.02584 0.97583 1.24200 0.83828 1.01339 0.99790 1.98734 1.29804 1.90950 1.96257 1.20380 0.83062 0.83301 0.91939 1.84599 1.57896 1.45749 1.37155 1.17762 1.05382 1.01725 0.90935 1.20721 0.97155 0.97877 0.90426 1.20690 1.01032 0.99316 0.97994 1.21208 0.94573 0.94257 0.97640 1.21230 1.03678 1.02690 0.89773 1.17955 0.91091 0.90322 0.87389 0.92269 0.92223 0.93167 0.76006 0.90778 0.91040 0.89799 0.89593 0.88379 0.88472 0.74314 0.85034 0.85713 0.85252 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.42 9.38 -34.44 -0.32 -14.74 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.23 5.69 4.52 -5.19 -0.02 5.66 16 10 N -0.50 -11.10 2.62 -116.37 -0.30 -11.40 16 11 C 0.57 12.87 7.57 -13.23 -0.10 12.77 16 12 O -0.52 -13.86 16.05 5.08 0.08 -13.78 16 13 C -0.36 -6.39 5.80 -102.68 -0.60 -6.99 16 14 C 0.59 9.71 5.45 -12.79 -0.07 9.64 16 15 O -0.52 -10.25 17.12 5.21 0.09 -10.16 16 16 N -0.73 -8.45 5.50 -61.58 -0.34 -8.78 16 17 C 0.12 1.04 5.68 -4.04 -0.02 1.02 16 18 C -0.14 -0.92 5.45 -26.73 -0.15 -1.06 16 19 C -0.03 -0.16 6.66 37.16 0.25 0.09 16 20 Cl -0.18 -1.48 29.15 -51.86 -1.51 -2.99 16 21 C 0.27 3.94 7.13 -35.65 -0.25 3.69 16 22 O -0.45 -4.98 12.91 -16.53 -0.21 -5.19 16 23 C -0.15 -2.40 5.88 -104.96 -0.62 -3.01 16 24 C -0.04 -0.54 9.60 -39.53 -0.38 -0.92 16 25 C -0.17 -1.93 9.97 -39.97 -0.40 -2.33 16 26 C -0.06 -0.73 10.01 -39.54 -0.40 -1.12 16 27 C -0.15 -2.53 9.16 -39.37 -0.36 -2.89 16 28 C 0.24 4.38 6.53 -83.83 -0.55 3.83 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.06 1.71 7.33 -51.93 -0.38 1.33 16 31 H 0.05 1.22 6.07 -51.93 -0.31 0.91 16 32 H 0.40 4.05 8.46 -40.82 -0.35 3.70 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 3.38 7.42 45.56 0.34 3.72 16 40 H 0.13 1.33 7.68 -52.49 -0.40 0.92 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 43 H 0.15 2.75 6.06 -52.49 -0.32 2.44 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -35.07 385.83 -9.10 -44.17 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.35 Total: 5.34 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -4.08 Total: 5.36 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.09 Total: -44.55 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.04 Total: -29.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -1.51 Total: -2.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.07 -9.10 -44.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299738196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.962 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds