Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 112.99762 * 2 1 4 4 N 1.46499 * 109.46889 * 48.18122 * 3 2 1 5 5 C 1.34872 * 125.68874 * 125.31330 * 4 3 2 6 6 C 1.36815 * 106.05287 * 180.16448 * 5 4 3 7 7 C 1.47804 * 126.95699 * 179.84891 * 6 5 4 8 8 O 1.35242 * 119.99806 * 179.71506 * 7 6 5 9 9 N 1.30108 * 119.99770 * 359.71723 * 7 6 5 10 10 C 1.46504 * 119.99642 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46954 * 114.99657 * 10 9 7 12 12 C 1.53076 * 109.45095 * 64.79057 * 11 10 9 13 13 C 1.53183 * 109.29478 * 181.24164 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45824 * 184.99714 * 11 10 9 25 25 N 1.34722 * 106.08274 * 359.59315 * 6 5 4 26 26 N 1.28623 * 108.68544 * 0.26056 * 25 6 5 27 27 C 1.54035 * 113.92973 * 131.93631 * 2 1 3 28 28 O 1.44179 * 85.51842 * 91.65993 * 27 2 1 29 29 C 1.44177 * 93.33865 * 24.19257 * 28 27 2 30 30 H 1.09000 * 109.47491 * 59.99878 * 1 2 3 31 31 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47109 * 299.99275 * 1 2 3 33 33 H 1.08999 * 109.47373 * 288.17141 * 3 2 1 34 34 H 1.09001 * 109.46653 * 168.17582 * 3 2 1 35 35 H 1.08001 * 126.97357 * 0.02562 * 5 4 3 36 36 H 0.96701 * 114.00167 * 0.02562 * 8 7 6 37 37 H 1.08997 * 109.47204 * 355.00230 * 10 9 7 38 38 H 1.08997 * 109.47276 * 234.99458 * 10 9 7 39 39 H 1.08990 * 109.46253 * 304.97651 * 11 10 9 40 40 H 1.09005 * 109.39190 * 61.36070 * 12 11 10 41 41 H 1.09004 * 109.62337 * 301.25863 * 12 11 10 42 42 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 43 43 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 44 44 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 46 46 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 47 47 H 1.09003 * 109.49897 * 58.66711 * 24 11 10 48 48 H 1.09004 * 109.50093 * 298.57181 * 24 11 10 49 49 H 1.08999 * 113.86461 * 205.80820 * 27 2 1 50 50 H 1.09000 * 113.86338 * 337.51321 * 27 2 1 51 51 H 1.09001 * 113.86157 * 221.65927 * 29 28 27 52 52 H 1.09004 * 113.97827 * 89.96886 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1277 1.4084 0.0000 4 7 1.4707 2.2177 1.0294 5 6 2.0938 2.8867 2.0210 6 6 1.1060 3.4971 2.7445 7 6 1.2774 4.3490 3.9401 8 8 0.1958 4.8896 4.5459 9 7 2.4689 4.5790 4.4096 10 6 2.6388 5.4239 5.5943 11 6 3.2032 4.5847 6.7425 12 6 4.6096 4.1025 6.3780 13 6 5.1589 3.2372 7.5165 14 7 5.0854 3.9987 8.7709 15 6 6.1966 4.1616 9.5544 16 1 6.2906 5.0345 10.1833 17 6 7.2021 3.2047 9.5403 18 7 6.9624 2.0053 9.0541 19 14 8.8954 3.6193 10.2114 20 1 8.9055 5.0228 10.6965 21 1 9.2197 2.7051 11.3357 22 1 9.9068 3.4595 9.1359 23 6 3.7968 4.5817 9.1688 24 6 3.2638 5.4349 8.0135 25 7 -0.0541 3.1691 2.1431 26 7 0.2037 2.4130 1.1350 27 6 2.1547 -0.9409 1.0474 28 8 2.1471 -1.9296 -0.0020 29 6 2.1519 -0.9397 -1.0502 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.9747 1.8681 -0.9764 34 1 3.1956 1.3498 0.2106 35 1 3.1567 2.9297 2.2075 36 1 -0.6449 4.6623 4.1256 37 1 1.6738 5.8375 5.8870 38 1 3.3281 6.2365 5.3653 39 1 2.5589 3.7222 6.9128 40 1 5.2604 4.9642 6.2292 41 1 4.5687 3.5143 5.4612 42 1 6.1963 2.9752 7.3084 43 1 4.5633 2.3287 7.6050 44 1 7.6649 1.3365 9.0446 45 1 3.0880 3.7841 9.3913 46 1 3.9349 5.2046 10.0525 47 1 2.2645 5.7952 8.2582 48 1 3.9277 6.2841 7.8519 49 1 3.1538 -0.6442 1.3665 50 1 1.4917 -1.1764 1.8799 51 1 1.4867 -1.1741 -1.8812 52 1 3.1494 -0.6414 -1.3732 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329523486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = 59.337172 kcal Electronic energy + Delta-G solvation = -32770.971518 eV Core-core repulsion = 28388.308350 eV Total energy + Delta-G solvation = -4382.663168 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.46019 -41.69792 -40.06437 -39.15413 -36.28531 -36.13299 -34.53613 -33.02289 -32.86466 -31.81517 -31.44273 -28.70899 -28.48067 -27.60150 -26.76325 -26.16634 -24.50373 -23.74614 -23.04417 -22.51047 -21.39904 -20.64593 -20.28630 -19.28716 -18.68556 -18.10113 -17.65715 -17.02387 -16.96562 -16.81161 -16.69438 -16.49387 -15.89991 -15.66324 -15.41301 -15.27414 -15.21477 -14.74246 -14.67023 -14.32696 -14.10920 -14.09488 -13.84722 -13.65186 -13.33556 -13.13855 -13.00873 -12.85165 -12.80681 -12.57857 -12.52271 -12.33196 -12.17347 -12.07713 -11.92583 -11.86316 -11.70310 -11.66796 -11.27532 -11.18610 -11.06951 -10.82825 -10.64141 -10.58677 -10.45112 -9.73715 -8.65648 -7.85099 -5.31257 0.25762 0.67329 1.20788 1.46736 1.47889 1.59248 2.01629 2.45744 2.52604 2.64258 2.95410 3.01217 3.28761 3.29988 3.71194 3.72385 3.75697 3.81371 3.97489 4.01435 4.11671 4.14691 4.18299 4.31336 4.37359 4.41182 4.55008 4.55933 4.58123 4.64750 4.71147 4.76171 4.81015 4.82473 4.83345 4.91142 4.92196 5.00770 5.05420 5.09507 5.14987 5.24482 5.27476 5.36362 5.39313 5.44714 5.54601 5.57368 5.68702 5.80972 6.41455 6.55331 6.80250 7.16870 7.25211 7.88437 8.41283 9.21259 Molecular weight = 363.21amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.002132 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.022270 B =13129.611981 C =15261.158519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 C 0.111 3.889 4 N -0.277 5.277 5 C 0.035 3.965 6 C -0.043 4.043 7 C 0.420 3.580 8 O -0.512 6.512 9 N -0.531 5.531 10 C 0.065 3.935 11 C -0.060 4.060 12 C -0.107 4.107 13 C 0.179 3.821 14 N -0.612 5.612 15 C -0.261 4.261 16 H 0.066 0.934 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.288 1.288 23 C 0.141 3.859 24 C -0.115 4.115 25 N -0.275 5.275 26 N -0.076 5.076 27 C 0.034 3.966 28 O -0.406 6.406 29 C 0.056 3.944 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.146 0.854 35 H 0.226 0.774 36 H 0.419 0.581 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.052 0.948 43 H -0.015 1.015 44 H 0.249 0.751 45 H 0.006 0.994 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.108 0.892 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 0.028 -25.886 28.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.007 4.007 4 N -0.068 5.068 5 C -0.119 4.119 6 C -0.180 4.180 7 C 0.192 3.808 8 O -0.309 6.309 9 N -0.268 5.268 10 C -0.064 4.064 11 C -0.079 4.079 12 C -0.146 4.146 13 C 0.053 3.947 14 N -0.336 5.336 15 C -0.391 4.391 16 H 0.084 0.916 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.796 3.204 20 H -0.191 1.191 21 H -0.220 1.220 22 H -0.215 1.215 23 C 0.015 3.985 24 C -0.155 4.155 25 N -0.144 5.144 26 N -0.056 5.056 27 C -0.043 4.043 28 O -0.325 6.325 29 C -0.020 4.020 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.164 0.836 35 H 0.242 0.758 36 H 0.276 0.724 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.003 0.997 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.119 0.881 50 H 0.094 0.906 51 H 0.126 0.874 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.958 -0.550 -26.175 29.212 hybrid contribution 0.696 0.090 1.244 1.429 sum -12.261 -0.460 -24.931 27.787 Atomic orbital electron populations 1.21730 0.91300 1.01992 1.03853 1.24008 0.98596 0.93423 0.97776 1.22873 0.98701 0.88589 0.90586 1.47437 1.05283 1.32489 1.21624 1.24052 1.02321 0.96073 0.89479 1.20187 0.91234 1.06795 0.99817 1.20773 0.84093 0.88330 0.87600 1.84879 1.18900 1.70672 1.56419 1.72811 1.16109 1.21564 1.16293 1.21862 1.00390 0.95116 0.88988 1.20900 0.96157 0.97097 0.93781 1.21875 0.95476 0.99410 0.97843 1.20580 0.98758 0.90758 0.84582 1.44372 1.05503 1.62267 1.21447 1.19566 0.96669 1.02069 1.20821 0.91615 1.25839 1.03205 0.94452 1.01396 1.70214 1.32773 1.03439 1.51866 0.85190 0.80035 0.77868 0.77258 1.19061 1.21958 1.21462 1.21040 0.86727 0.94647 0.96056 1.21895 1.00741 0.98046 0.94778 1.75276 1.23874 1.11031 1.04243 1.78139 0.97376 1.14655 1.15385 1.24283 1.01312 0.86589 0.92111 1.89728 1.95910 1.28807 1.18092 1.24264 1.02190 0.84064 0.91506 0.90360 0.92531 0.91810 0.84725 0.83573 0.75754 0.72436 0.92508 0.89817 0.93912 0.93366 0.91396 0.92983 0.99655 0.94161 0.97604 0.92660 0.90471 0.92077 0.88090 0.90568 0.87376 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.21 71.98 0.59 -0.92 16 2 C -0.14 -1.07 1.23 -51.48 -0.06 -1.13 16 3 C 0.11 0.47 6.03 86.38 0.52 0.99 16 4 N -0.28 -3.49 3.41 -346.86 -1.18 -4.67 16 5 C 0.04 0.54 11.31 83.89 0.95 1.49 16 6 C -0.04 -0.90 7.07 40.90 0.29 -0.61 16 7 C 0.42 10.31 7.98 87.48 0.70 11.01 16 8 O -0.51 -11.70 12.00 -85.25 -1.02 -12.72 16 9 N -0.53 -14.79 9.73 -455.55 -4.43 -19.23 16 10 C 0.07 1.93 5.73 86.38 0.49 2.43 16 11 C -0.06 -2.12 2.35 -10.75 -0.03 -2.15 16 12 C -0.11 -4.28 5.27 30.68 0.16 -4.12 16 13 C 0.18 9.11 5.30 86.36 0.46 9.57 16 14 N -0.61 -32.36 3.00 -699.11 -2.09 -34.45 16 15 C -0.26 -14.87 9.58 84.03 0.81 -14.07 16 16 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 17 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 18 N -0.94 -56.97 11.20 21.65 0.24 -56.73 16 19 Si 0.97 45.76 29.59 68.60 2.03 47.79 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.14 6.19 6.52 86.36 0.56 6.75 16 24 C -0.12 -4.07 5.36 30.67 0.16 -3.90 16 25 N -0.27 -5.89 11.99 -49.49 -0.59 -6.48 16 26 N -0.08 -1.37 9.73 37.02 0.36 -1.01 16 27 C 0.03 0.41 8.36 72.27 0.60 1.02 16 28 O -0.41 -6.31 12.37 -148.98 -1.84 -8.15 16 29 C 0.06 0.34 8.36 72.27 0.60 0.95 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.06 1.04 5.68 -2.39 -0.01 1.02 16 33 H 0.13 -0.02 8.14 -2.39 -0.02 -0.03 16 34 H 0.15 -0.19 7.85 -2.39 -0.02 -0.21 16 35 H 0.23 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.42 6.69 8.44 -74.06 -0.62 6.07 16 37 H 0.06 1.62 6.74 -2.39 -0.02 1.61 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.07 2.52 7.72 -2.38 -0.02 2.51 16 42 H 0.05 2.97 6.06 -2.38 -0.01 2.95 16 43 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 46 H 0.05 2.35 7.93 -2.39 -0.02 2.33 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.10 0.93 7.96 -2.39 -0.02 0.91 16 50 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 51 H 0.11 0.44 8.10 -2.39 -0.02 0.42 16 52 H 0.11 0.08 8.10 -2.39 -0.02 0.06 16 Total: -1.00 -77.19 416.19 -1.00 -78.18 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.31 Total: 12.84 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 7.23 Total: 4.64 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -7.70 Total: -122.57 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -2.87 Total: -20.88 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.19 -1.00 -78.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329523486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.520 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds