Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40429 * 107.86663 * 179.88433 * 3 2 1 5 5 N 1.40063 * 125.97416 * 180.12995 * 4 3 2 6 6 C 1.34778 * 120.00055 * 0.27623 * 5 4 3 7 7 O 1.21532 * 119.99947 * 359.97438 * 6 5 4 8 8 C 1.48087 * 119.99709 * 179.97438 * 6 5 4 9 9 C 1.39354 * 119.71236 * 179.71957 * 8 6 5 10 10 C 1.38526 * 119.07307 * 179.77125 * 9 8 6 11 11 C 1.38748 * 118.48125 * 0.49949 * 10 9 8 12 12 Br 1.89103 * 120.33125 * 179.77122 * 11 10 9 13 13 C 1.38675 * 119.33438 * 359.74401 * 11 10 9 14 14 N 1.31497 * 120.88689 * 0.02562 * 13 11 10 15 15 N 1.31234 * 108.04785 * 0.38170 * 4 3 2 16 16 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 17 17 C 1.46504 * 125.97291 * 359.94308 * 16 2 1 18 18 C 1.50697 * 109.47107 * 90.00283 * 17 16 2 19 19 H 1.07999 * 120.00119 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99897 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99773 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99822 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47259 * 90.00221 * 22 20 18 24 24 H 1.48502 * 109.46751 * 210.00204 * 22 20 18 25 25 H 1.48510 * 109.47158 * 329.99961 * 22 20 18 26 26 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 29 29 H 1.08004 * 126.06330 * 359.97438 * 3 2 1 30 30 H 0.97001 * 119.99807 * 180.26925 * 5 4 3 31 31 H 1.08007 * 120.46239 * 0.02562 * 9 8 6 32 32 H 1.08003 * 120.76184 * 180.22846 * 10 9 8 33 33 H 1.07997 * 119.55619 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46648 * 210.00190 * 17 16 2 35 35 H 1.08999 * 109.47233 * 329.99910 * 17 16 2 36 36 H 0.97005 * 119.99683 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7729 1.4743 0.0061 6 6 4.6361 2.8151 0.0128 7 8 3.5273 3.3128 0.0152 8 6 5.8368 3.6818 0.0170 9 6 5.6885 5.0674 0.0179 10 6 6.8207 5.8655 0.0267 11 6 8.0642 5.2500 0.0236 12 35 9.6441 6.2892 0.0288 13 6 8.1367 3.8652 0.0174 14 7 7.0451 3.1321 0.0138 15 7 3.6337 -0.6578 -0.0041 16 7 2.3016 -1.0910 -0.0059 17 6 1.8499 -2.4846 -0.0123 18 6 1.6939 -2.9556 -1.4353 19 1 1.9093 -2.2840 -2.2531 20 6 1.2752 -4.2438 -1.6931 21 7 1.1386 -4.6547 -2.9349 22 14 0.9020 -5.4053 -0.2785 23 1 -0.5286 -5.2810 0.0998 24 1 1.1837 -6.8019 -0.6974 25 1 1.7543 -5.0564 0.8865 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5186 28 1 -0.3633 0.8928 -0.5090 29 1 1.9718 2.1210 -0.0004 30 1 5.6578 1.0770 0.0039 31 1 4.7046 5.5128 0.0159 32 1 6.7374 6.9424 0.0313 33 1 9.1028 3.3824 0.0146 34 1 2.5849 -3.1071 0.4980 35 1 0.8917 -2.5583 0.5020 36 1 0.8444 -5.5610 -3.1163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348825249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = 91.135344 kcal Electronic energy + Delta-G solvation = -22773.264359 eV Core-core repulsion = 19113.043596 eV Total energy + Delta-G solvation = -3660.220763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.028 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22947 -40.57292 -39.01225 -35.09064 -33.86136 -33.24768 -32.54158 -31.60568 -31.17368 -30.19895 -27.27410 -26.45919 -25.03480 -24.21266 -22.66440 -21.63556 -19.87880 -19.68973 -17.89552 -17.33362 -17.13130 -16.25441 -16.05789 -15.63802 -15.44610 -15.27177 -14.67681 -14.32798 -14.20621 -13.83287 -13.76343 -13.25516 -12.63797 -12.58492 -12.44777 -12.34752 -12.05144 -11.84548 -11.59428 -11.25914 -11.08292 -10.83210 -10.62946 -10.40871 -10.40295 -10.07314 -9.98858 -9.78182 -9.60760 -9.49242 -8.79859 -8.05365 -7.55203 -6.27540 -4.30994 -0.09092 0.59106 0.89484 2.13310 2.52788 2.72887 3.13699 3.21990 3.22400 3.22851 3.47417 3.69474 3.80388 4.13151 4.20417 4.23662 4.36682 4.56549 5.00301 5.13075 5.21841 5.24540 5.38205 5.59997 5.82411 5.83422 5.99893 6.11009 6.32956 6.38210 6.48279 6.55410 6.68790 7.08573 7.26894 7.30227 7.50192 7.81039 8.03740 8.29238 8.51228 8.77918 9.27356 10.84858 Molecular weight = 364.03amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.001764 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.166652 B =15868.800401 C =16544.662084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.286 4.286 4 C 0.264 3.736 5 N -0.608 5.608 6 C 0.576 3.424 7 O -0.504 6.504 8 C 0.103 3.897 9 C -0.102 4.102 10 C -0.050 4.050 11 C -0.131 4.131 12 Br -0.025 7.025 13 C 0.135 3.865 14 N -0.448 5.448 15 N -0.311 5.311 16 N -0.314 5.314 17 C 0.231 3.769 18 C -0.542 4.542 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.885 5.885 22 Si 0.872 3.128 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.263 1.263 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.422 0.578 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.174 0.826 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.620 24.279 8.231 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.317 4.317 4 C 0.011 3.989 5 N -0.254 5.254 6 C 0.359 3.641 7 O -0.377 6.377 8 C -0.036 4.036 9 C -0.124 4.124 10 C -0.078 4.078 11 C -0.213 4.213 12 Br 0.060 6.940 13 C -0.027 4.027 14 N -0.160 5.160 15 N -0.141 5.141 16 N -0.096 5.096 17 C 0.112 3.888 18 C -0.580 4.580 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.522 5.522 22 Si 0.698 3.302 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.188 1.188 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.179 0.821 30 H 0.259 0.741 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.072 22.745 8.102 28.464 hybrid contribution -0.410 0.372 0.466 0.724 sum 14.663 23.118 8.568 28.685 Atomic orbital electron populations 1.20416 0.87695 1.04280 1.02531 1.21073 0.94990 0.86904 1.00553 1.21265 0.89593 0.99911 1.20937 1.18926 0.87043 0.89606 1.03311 1.42188 1.08403 1.04586 1.70257 1.17630 0.87546 0.81345 0.77553 1.90757 1.24713 1.74021 1.48170 1.21211 0.91516 0.92291 0.98535 1.22190 1.00897 0.92733 0.96581 1.21643 0.90062 1.01549 0.94510 1.23260 0.93942 0.96343 1.07725 1.96814 1.30397 1.69429 1.97406 1.22904 0.97745 0.88473 0.93559 1.67745 0.97906 1.39980 1.10341 1.77301 0.99391 1.08503 1.28929 1.48569 1.01205 1.07116 1.52728 1.20022 0.95348 0.73647 0.99783 1.21172 1.47455 0.99086 0.90303 0.90071 1.24811 0.94471 0.97452 0.95792 1.69874 1.45526 1.18341 1.18487 0.86905 0.79429 0.81032 0.82798 1.19598 1.20480 1.18777 0.91003 0.89769 0.90289 0.82070 0.74081 0.82033 0.82794 0.80889 0.93120 0.93561 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.89 36.01 0.36 -1.12 16 2 C 0.10 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.71 9.52 -39.83 -0.38 -6.09 16 4 C 0.26 5.34 8.10 -154.46 -1.25 4.09 16 5 N -0.61 -9.90 5.43 -11.93 -0.06 -9.96 16 6 C 0.58 8.50 7.78 -12.22 -0.10 8.40 16 7 O -0.50 -8.36 13.45 5.34 0.07 -8.29 16 8 C 0.10 1.18 6.75 -83.01 -0.56 0.62 16 9 C -0.10 -0.90 9.63 -39.06 -0.38 -1.27 16 10 C -0.05 -0.34 9.93 -39.29 -0.39 -0.73 16 11 C -0.13 -0.95 6.26 -39.23 -0.25 -1.19 16 12 Br -0.03 -0.16 33.73 -68.01 -2.29 -2.45 16 13 C 0.13 1.10 10.94 -17.53 -0.19 0.91 16 14 N -0.45 -4.78 9.54 -9.78 -0.09 -4.87 16 15 N -0.31 -7.10 12.59 31.43 0.40 -6.70 16 16 N -0.31 -7.23 3.59 -58.33 -0.21 -7.44 16 17 C 0.23 5.51 4.88 -5.19 -0.03 5.49 16 18 C -0.54 -15.08 9.94 -34.44 -0.34 -15.42 16 19 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 22 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.47 7.71 -51.93 -0.40 1.07 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 30 H 0.42 6.13 8.15 -40.82 -0.33 5.80 16 31 H 0.16 1.25 7.64 -52.48 -0.40 0.85 16 32 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.05 1.22 7.20 -51.93 -0.37 0.85 16 35 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -32.75 338.98 -8.62 -41.36 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -3.47 Total: 6.19 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -4.17 Total: -2.85 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.80 Total: -54.39 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.29 Total: -2.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.75 -8.62 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348825249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.498 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds