Wall clock time and date at job start Tue Mar 31 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76198 * 103.00241 * 2 1 4 4 C 1.38996 * 120.07966 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.92194 * 179.97438 * 4 3 2 6 6 C 1.38319 * 120.07847 * 0.26146 * 5 4 3 7 7 C 1.38286 * 120.16156 * 359.48348 * 6 5 4 8 8 C 1.50697 * 119.96141 * 180.25904 * 7 6 5 9 9 H 1.09001 * 109.47563 * 200.25324 * 8 7 6 10 10 N 1.46494 * 109.47228 * 320.25548 * 8 7 6 11 11 C 1.34778 * 120.00265 * 204.99773 * 10 8 7 12 12 O 1.21694 * 119.99599 * 0.02562 * 11 10 8 13 13 C 1.46372 * 120.00361 * 179.97438 * 11 10 8 14 14 H 1.08007 * 119.99919 * 359.97438 * 13 11 10 15 15 C 1.40049 * 120.00396 * 180.02562 * 13 11 10 16 16 N 1.30678 * 119.99736 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00300 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47016 * 90.00034 * 17 15 13 19 19 H 1.48503 * 109.47012 * 210.00154 * 17 15 13 20 20 H 1.48498 * 109.47033 * 330.00067 * 17 15 13 21 21 C 1.50709 * 109.47120 * 80.25434 * 8 7 6 22 22 C 1.38251 * 119.96291 * 99.99951 * 21 8 7 23 23 C 1.38220 * 120.06928 * 180.02562 * 22 21 8 24 24 C 1.38416 * 119.99816 * 359.97438 * 23 22 21 25 25 F 1.35095 * 120.03398 * 180.02562 * 24 23 22 26 26 C 1.38647 * 119.92949 * 0.02562 * 24 23 22 27 27 F 1.35101 * 120.03469 * 179.97438 * 26 24 23 28 28 C 1.38212 * 119.96118 * 279.72578 * 21 8 7 29 29 C 1.38101 * 120.07687 * 0.51017 * 7 6 5 30 30 H 1.09003 * 109.47239 * 299.99871 * 1 2 3 31 31 H 1.09001 * 109.47195 * 59.99995 * 1 2 3 32 32 H 1.09001 * 109.47101 * 180.02562 * 1 2 3 33 33 H 1.07999 * 120.03859 * 359.95859 * 4 3 2 34 34 H 1.08002 * 119.95807 * 179.97438 * 5 4 3 35 35 H 1.07998 * 119.91905 * 179.74712 * 6 5 4 36 36 H 0.96998 * 120.00310 * 25.00031 * 10 8 7 37 37 H 0.96994 * 119.99641 * 179.97438 * 16 15 13 38 38 H 1.07998 * 119.97007 * 359.97438 * 22 21 8 39 39 H 1.08002 * 120.00160 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.00584 * 359.97438 * 28 21 8 41 41 H 1.08008 * 120.03867 * 179.71985 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0005 5 6 1.5095 4.0106 0.0011 6 6 2.8328 4.4131 -0.0044 7 6 3.8455 3.4714 0.0004 8 6 5.2857 3.9150 0.0003 9 1 5.9172 3.0993 -0.3516 10 7 5.4408 5.0703 -0.8870 11 6 6.6381 5.3343 -1.4467 12 8 7.5902 4.6126 -1.2153 13 6 6.7929 6.4883 -2.3338 14 1 5.9476 7.1280 -2.5402 15 6 8.0369 6.7623 -2.9158 16 7 9.0594 5.9873 -2.6673 17 14 8.2343 8.2345 -4.0484 18 1 8.6244 9.4244 -3.2501 19 1 9.2875 7.9469 -5.0552 20 1 6.9481 8.5027 -4.7404 21 6 5.6934 4.2982 1.3997 22 6 6.4131 3.4097 2.1769 23 6 6.7878 3.7586 3.4608 24 6 6.4428 4.9989 3.9694 25 9 6.8090 5.3408 5.2240 26 6 5.7210 5.8898 3.1900 27 9 5.3827 7.1007 3.6845 28 6 5.3523 5.5395 1.9026 29 6 3.5386 2.1250 0.0000 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.1617 2.3526 0.0003 34 1 0.7212 4.7488 0.0011 35 1 3.0758 5.4654 -0.0081 36 1 4.6818 5.6453 -1.0718 37 1 9.9209 6.1769 -3.0707 38 1 6.6823 2.4417 1.7807 39 1 7.3503 3.0639 4.0668 40 1 4.7942 6.2345 1.2928 41 1 4.3300 1.3900 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356766483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:36 Heat of formation + Delta-G solvation = -76.459059 kcal Electronic energy + Delta-G solvation = -29408.482836 eV Core-core repulsion = 25015.344766 eV Total energy + Delta-G solvation = -4393.138070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.085 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.25411 -48.33238 -40.00977 -38.49019 -37.14016 -34.33485 -32.49534 -31.26369 -30.89272 -30.58782 -30.18977 -29.05097 -26.72669 -25.13131 -23.27952 -22.74071 -22.27338 -21.06149 -19.61040 -17.98748 -17.81907 -17.17084 -16.79315 -16.60550 -16.33408 -16.08541 -15.51755 -15.19658 -14.88079 -14.75805 -14.71665 -14.32782 -14.25740 -14.09090 -13.89784 -13.80599 -13.66900 -13.23103 -12.84800 -12.73997 -12.67649 -12.38415 -12.11254 -11.95125 -11.64362 -11.44606 -11.22168 -11.10535 -11.00060 -10.90456 -10.53743 -10.38195 -10.27561 -9.78826 -8.97838 -8.89260 -8.81394 -8.40252 -7.79539 -7.71404 -7.53025 -6.25877 -4.71959 1.05201 1.17573 1.24758 1.32815 1.35498 2.22216 3.10937 3.18221 3.20899 3.53264 3.64535 4.00072 4.04437 4.46838 4.50646 4.52850 4.72848 4.75563 4.76067 4.81212 4.83284 4.97986 5.05444 5.22640 5.30386 5.33408 5.39876 5.47565 5.58032 5.73566 5.88532 5.92152 5.95838 6.06419 6.10010 6.15220 6.24091 6.35525 6.50191 6.67779 6.83129 6.96090 7.36930 7.73970 7.91358 8.22001 8.95674 9.36634 10.50387 10.68330 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.006782 B = 0.003758 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4127.449663 B = 7449.409452 C =10143.427002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.121 6.121 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.098 4.098 6 C -0.111 4.111 7 C -0.055 4.055 8 C 0.231 3.769 9 H 0.103 0.897 10 N -0.757 5.757 11 C 0.556 3.444 12 O -0.573 6.573 13 C -0.543 4.543 14 H 0.068 0.932 15 C 0.089 3.911 16 N -0.764 5.764 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.051 4.051 22 C -0.085 4.085 23 C -0.126 4.126 24 C 0.055 3.945 25 F -0.136 7.136 26 C 0.064 3.936 27 F -0.134 7.134 28 C -0.102 4.102 29 C -0.086 4.086 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.382 0.618 37 H 0.269 0.731 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -7.696 7.798 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.120 5.880 3 C -0.195 4.195 4 C -0.161 4.161 5 C -0.117 4.117 6 C -0.131 4.131 7 C -0.057 4.057 8 C 0.124 3.876 9 H 0.120 0.880 10 N -0.412 5.412 11 C 0.361 3.639 12 O -0.455 6.455 13 C -0.580 4.580 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.393 5.393 17 Si 0.731 3.269 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.053 4.053 22 C -0.104 4.104 23 C -0.145 4.145 24 C 0.035 3.965 25 F -0.115 7.115 26 C 0.044 3.956 27 F -0.112 7.112 28 C -0.121 4.121 29 C -0.109 4.109 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.215 0.785 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.057 -9.280 7.970 18.634 hybrid contribution -1.045 2.537 -0.311 2.761 sum -15.102 -6.743 7.660 18.226 Atomic orbital electron populations 1.23652 0.95107 1.06913 1.05600 1.85527 1.06035 1.03532 1.92868 1.21606 0.96523 0.96157 1.05229 1.21089 0.97879 0.93275 1.03880 1.20988 0.96419 0.95188 0.99149 1.21044 0.92276 0.99755 1.00034 1.19910 0.95087 0.92875 0.97869 1.18281 0.90791 0.92518 0.86052 0.87957 1.46405 1.14159 1.29208 1.51446 1.18250 0.79905 0.85895 0.79885 1.90614 1.38452 1.51693 1.64726 1.20835 0.96506 1.11347 1.29287 0.91396 1.25685 0.95333 0.96550 0.95602 1.70005 1.00609 1.33655 1.35006 0.86382 0.78732 0.81695 0.80047 1.19722 1.20419 1.18879 1.20302 0.95725 0.92937 0.96365 1.20943 0.96596 1.00312 0.92511 1.20975 1.01841 0.94700 0.97015 1.17634 1.02539 0.95319 0.81007 1.91484 1.90009 1.92576 1.37387 1.17624 1.02340 0.81873 0.93807 1.91496 1.90642 1.41368 1.87715 1.20834 1.01105 0.97767 0.92412 1.20592 0.94331 0.95387 1.00638 0.89832 0.89774 0.87557 0.86132 0.85654 0.85556 0.78490 0.92020 0.84326 0.83964 0.83997 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.15 101.05 0.92 -0.04 16 2 S -0.12 -1.26 22.56 -107.50 -2.43 -3.69 16 3 C -0.08 -1.00 6.11 -39.04 -0.24 -1.24 16 4 C -0.14 -1.49 9.36 -39.37 -0.37 -1.85 16 5 C -0.10 -1.07 10.04 -39.62 -0.40 -1.46 16 6 C -0.11 -1.40 8.87 -39.53 -0.35 -1.75 16 7 C -0.05 -0.78 4.94 -104.66 -0.52 -1.30 16 8 C 0.23 3.97 2.38 -70.23 -0.17 3.81 16 9 H 0.10 1.95 7.29 -51.93 -0.38 1.57 16 10 N -0.76 -15.22 4.25 -57.48 -0.24 -15.46 16 11 C 0.56 14.67 7.70 -12.99 -0.10 14.57 16 12 O -0.57 -17.27 14.68 5.19 0.08 -17.20 16 13 C -0.54 -14.60 9.54 -35.63 -0.34 -14.94 16 14 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 15 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 16 N -0.76 -22.20 11.83 55.55 0.66 -21.55 16 17 Si 0.91 19.67 29.56 -169.99 -5.02 14.64 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.05 -0.85 4.90 -104.62 -0.51 -1.36 16 22 C -0.08 -1.27 9.66 -39.58 -0.38 -1.66 16 23 C -0.13 -1.79 10.02 -39.52 -0.40 -2.19 16 24 C 0.06 0.88 7.31 -39.36 -0.29 0.59 16 25 F -0.14 -2.16 17.18 2.25 0.04 -2.12 16 26 C 0.06 1.06 7.31 -39.36 -0.29 0.77 16 27 F -0.13 -2.26 17.18 2.25 0.04 -2.22 16 28 C -0.10 -1.69 9.11 -39.52 -0.36 -2.05 16 29 C -0.09 -1.15 9.41 -39.37 -0.37 -1.52 16 30 H 0.08 0.50 7.75 -51.92 -0.40 0.10 16 31 H 0.08 0.52 7.75 -51.92 -0.40 0.11 16 32 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.12 1.01 5.88 -52.49 -0.31 0.70 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.49 6.47 -52.49 -0.34 1.15 16 36 H 0.38 6.74 6.83 -40.82 -0.28 6.46 16 37 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 38 H 0.14 1.80 8.03 -52.49 -0.42 1.38 16 39 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.14 2.20 7.28 -52.49 -0.38 1.82 16 41 H 0.13 1.65 8.04 -52.48 -0.42 1.23 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -33.24 375.62 -9.62 -42.86 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.15 Total: 8.40 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -4.25 Total: -9.33 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.41 Total: -37.01 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.08 Total: -17.20 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.43 Total: -3.69 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.24 -9.62 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356766483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.601 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds