Wall clock time and date at job start Tue Mar 31 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34230 * 116.99773 * 2 1 4 4 O 1.20823 * 119.99987 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99816 * 179.97438 * 3 2 1 6 6 N 1.46900 * 112.84798 * 323.46838 * 5 3 2 7 7 C 1.46904 * 110.99910 * 188.62194 * 6 5 3 8 8 C 1.50700 * 109.46805 * 276.53753 * 7 6 5 9 9 O 1.21276 * 120.00709 * 352.25383 * 8 7 6 10 10 N 1.34777 * 119.99578 * 172.26229 * 8 7 6 11 11 C 1.46504 * 120.00078 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46760 * 89.99987 * 11 10 8 13 13 H 1.07999 * 120.00088 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99718 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00017 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99692 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47278 * 90.00312 * 16 14 12 18 18 H 1.48505 * 109.46731 * 209.99797 * 16 14 12 19 19 H 1.48502 * 109.47368 * 329.99749 * 16 14 12 20 20 C 1.46504 * 120.00427 * 359.97438 * 10 8 7 21 21 C 1.52996 * 109.46831 * 89.99831 * 20 10 8 22 22 C 1.47201 * 109.47152 * 180.02562 * 21 20 10 23 23 N 9.56166 * 157.36772 * 67.82679 * 2 1 3 24 24 C 1.46898 * 111.00356 * 312.57560 * 6 5 3 25 25 C 1.52997 * 117.49839 * 249.07978 * 24 6 5 26 26 C 1.52995 * 117.50089 * 180.41981 * 24 6 5 27 27 C 1.53779 * 113.61137 * 192.16313 * 5 3 2 28 28 C 1.53782 * 87.08134 * 220.01862 * 27 5 3 29 29 C 1.53782 * 113.61086 * 94.66667 * 5 3 2 30 30 H 1.09003 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47063 * 300.00008 * 1 2 3 32 32 H 1.08997 * 109.46996 * 60.00282 * 1 2 3 33 33 H 1.08999 * 109.46748 * 36.52989 * 7 6 5 34 34 H 1.08992 * 109.47341 * 156.53177 * 7 6 5 35 35 H 1.08998 * 109.47688 * 209.99740 * 11 10 8 36 36 H 1.08997 * 109.47004 * 330.00267 * 11 10 8 37 37 H 0.97001 * 120.00100 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.47422 * 209.99669 * 20 10 8 39 39 H 1.08996 * 109.46516 * 330.00455 * 20 10 8 40 40 H 1.09004 * 109.47628 * 300.00030 * 21 20 10 41 41 H 1.09004 * 109.47354 * 60.00770 * 21 20 10 42 42 H 1.09006 * 115.54835 * 34.74618 * 24 6 5 43 43 H 1.09001 * 117.50290 * 0.02562 * 25 24 6 44 44 H 1.09003 * 117.49874 * 145.02062 * 25 24 6 45 45 H 1.09005 * 117.50055 * 214.98131 * 26 24 6 46 46 H 1.09001 * 117.49706 * 359.97438 * 26 24 6 47 47 H 1.08996 * 113.61731 * 334.56842 * 27 5 3 48 48 H 1.09001 * 113.61187 * 105.47377 * 27 5 3 49 49 H 1.09001 * 113.61631 * 270.88572 * 28 27 5 50 50 H 1.08998 * 113.61905 * 139.98053 * 28 27 5 51 51 H 1.09003 * 113.61065 * 254.52222 * 29 5 3 52 52 H 1.09001 * 113.61734 * 25.43301 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1926 0.2187 0.8069 7 6 5.6364 0.4502 0.9480 8 6 6.3524 -0.0900 -0.2630 9 8 5.7444 -0.7386 -1.0879 10 7 7.6686 0.1477 -0.4293 11 6 8.3649 -0.3779 -1.6063 12 6 8.2986 0.6329 -2.7221 13 1 7.7884 1.5726 -2.5699 14 6 8.8883 0.3576 -3.9376 15 7 9.5091 -0.7869 -4.1231 16 14 8.8055 1.6102 -5.3209 17 1 9.9783 2.5173 -5.2381 18 1 8.8161 0.9055 -6.6280 19 1 7.5563 2.4035 -5.1963 20 6 8.4031 0.9316 0.5669 21 6 8.9684 -0.0047 1.6367 22 6 9.7059 0.7829 2.6380 23 7 10.2774 1.3887 3.4074 24 6 3.5465 0.1067 2.1214 25 6 4.3558 0.5397 3.3455 26 6 4.0910 -0.9459 3.0889 27 6 4.1092 2.6827 0.2974 28 6 5.1715 2.4152 -0.7819 29 6 4.1760 1.4213 -1.4036 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 5.8259 1.5201 1.0349 34 1 6.0001 -0.0570 1.8415 35 1 9.4073 -0.5734 -1.3547 36 1 7.8885 -1.3044 -1.9266 37 1 9.9243 -0.9804 -4.9781 38 1 9.2209 1.4629 0.0802 39 1 7.7289 1.6503 1.0325 40 1 8.1505 -0.5361 2.1236 41 1 9.6426 -0.7235 1.1711 42 1 2.4730 0.2957 2.1352 43 1 5.3675 0.9080 3.1755 44 1 3.8147 1.0131 4.1648 45 1 3.3758 -1.4494 3.7395 46 1 4.9284 -1.5558 2.7499 47 1 3.4150 3.4821 0.0381 48 1 4.5229 2.7887 1.3003 49 1 6.0760 1.9441 -0.3971 50 1 5.3788 3.2785 -1.4141 51 1 4.6436 0.5090 -1.7739 52 1 3.5000 1.8758 -2.1279 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408522541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:26 Heat of formation + Delta-G solvation = 14.730602 kcal Electronic energy + Delta-G solvation = -35664.711023 eV Core-core repulsion = 31247.820818 eV Total energy + Delta-G solvation = -4416.890205 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84166 -40.01344 -38.42073 -37.43653 -36.90082 -36.24512 -35.26994 -32.95880 -32.09133 -30.89403 -29.73400 -27.92044 -26.76499 -25.70130 -24.76008 -24.05180 -22.94181 -22.46195 -21.77228 -20.60296 -19.58944 -18.34061 -17.99666 -17.72435 -17.15799 -16.80163 -16.52661 -16.43731 -15.96435 -15.63992 -15.19930 -14.98607 -14.74402 -14.28764 -14.06063 -14.01758 -13.64359 -13.50865 -13.33972 -12.91458 -12.78726 -12.52882 -12.44264 -12.41887 -12.31199 -12.14342 -12.08471 -11.86388 -11.63847 -11.61723 -11.36121 -11.29737 -11.15824 -11.01431 -10.93224 -10.86014 -10.69535 -10.63520 -10.32681 -10.32235 -10.14781 -10.03996 -9.67939 -8.94736 -8.48433 -8.17400 -7.81779 -6.10047 -4.14427 2.07794 2.66604 2.69596 2.78139 3.11488 3.25108 3.27349 3.35418 3.38679 3.61228 3.80802 4.18044 4.30225 4.40470 4.55434 4.63815 4.71538 4.77406 4.83114 4.88444 4.93127 4.98170 4.99603 5.05382 5.07232 5.15007 5.20914 5.26341 5.29450 5.38436 5.43420 5.47284 5.60328 5.65517 5.76218 5.76782 5.81495 5.94224 5.98144 6.01076 6.12880 6.29476 6.30636 6.62298 6.71639 6.90415 6.97887 7.35038 7.42197 7.53160 7.72814 7.86181 8.15369 8.21467 8.83341 8.98175 9.51344 10.98009 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.008050 B = 0.004264 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.547576 B = 6565.057703 C = 8853.408923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.336 6.336 3 C 0.488 3.512 4 O -0.511 6.511 5 C 0.099 3.901 6 N -0.446 5.446 7 C 0.004 3.996 8 C 0.509 3.491 9 O -0.499 6.499 10 N -0.599 5.599 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.114 3.886 21 C -0.051 4.051 22 C 0.216 3.784 23 N -0.443 5.443 24 C 0.024 3.976 25 C -0.225 4.225 26 C -0.163 4.163 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.139 4.139 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.263 0.737 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.138 0.862 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 1.496 13.529 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.251 6.251 3 C 0.331 3.669 4 O -0.399 6.399 5 C 0.008 3.992 6 N -0.167 5.167 7 C -0.126 4.126 8 C 0.295 3.705 9 O -0.374 6.374 10 N -0.332 5.332 11 C 0.128 3.872 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.013 4.013 21 C -0.093 4.093 22 C -0.102 4.102 23 N -0.121 5.121 24 C -0.086 4.086 25 C -0.264 4.264 26 C -0.201 4.201 27 C -0.191 4.191 28 C -0.193 4.193 29 C -0.176 4.176 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.096 0.904 51 H 0.155 0.845 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.321 1.748 13.785 17.923 hybrid contribution -0.339 1.258 -0.631 1.448 sum -11.660 3.006 13.154 17.833 Atomic orbital electron populations 1.23283 0.77223 1.03683 1.02164 1.86712 1.22441 1.32790 1.83197 1.23303 0.90918 0.81352 0.71371 1.90643 1.66463 1.36618 1.46130 1.22252 0.85794 0.91508 0.99638 1.61402 1.01390 1.41709 1.12237 1.22889 0.88416 1.02135 0.99182 1.19951 0.82223 0.81340 0.86949 1.90554 1.64687 1.38293 1.43838 1.48259 1.08051 1.53079 1.23792 1.19355 0.91717 0.95676 0.80479 1.21389 1.35187 1.02915 0.97015 0.92240 1.24885 0.95179 0.95389 0.98354 1.69911 1.35932 1.22451 1.24864 0.86577 0.78393 0.81294 0.81650 1.20747 1.21195 1.19832 1.21347 0.98121 0.92645 0.89152 1.19912 0.99612 0.97631 0.92141 1.29010 0.93534 0.93820 0.93863 1.81121 1.09957 1.09749 1.11227 1.22653 0.97321 1.04590 0.83990 1.23699 1.02465 0.98765 1.01520 1.23095 1.03869 0.91647 1.01441 1.23610 0.99316 0.96163 1.00055 1.23372 0.97689 1.00361 0.97909 1.23647 0.97719 1.03769 0.92507 0.88056 0.92276 0.92026 0.89521 0.87961 0.94791 0.93427 0.92704 0.88471 0.91027 0.87731 0.86279 0.86580 0.88157 0.88651 0.88195 0.88015 0.88012 0.90783 0.88077 0.90413 0.84465 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.34 -4.59 9.53 -39.26 -0.37 -4.96 16 3 C 0.49 7.13 5.69 36.01 0.20 7.33 16 4 O -0.51 -8.08 15.65 -18.75 -0.29 -8.37 16 5 C 0.10 1.42 1.18 -131.94 -0.16 1.26 16 6 N -0.45 -6.03 4.19 -212.91 -0.89 -6.92 16 7 C 0.00 0.05 2.45 -4.97 -0.01 0.04 16 8 C 0.51 8.49 4.97 -10.99 -0.05 8.44 16 9 O -0.50 -10.56 12.92 5.56 0.07 -10.49 16 10 N -0.60 -9.85 2.24 -175.06 -0.39 -10.24 16 11 C 0.25 5.42 5.16 -5.19 -0.03 5.39 16 12 C -0.53 -13.12 9.39 -34.44 -0.32 -13.44 16 13 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 16 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 C 0.11 1.37 4.93 -4.04 -0.02 1.35 16 21 C -0.05 -0.48 6.03 -29.52 -0.18 -0.66 16 22 C 0.22 2.42 15.43 -20.83 -0.32 2.09 16 23 N -0.44 -6.17 18.52 42.07 0.78 -5.39 16 24 C 0.02 0.26 5.58 -67.72 -0.38 -0.12 16 25 C -0.23 -1.98 9.56 -26.70 -0.26 -2.23 16 26 C -0.16 -1.50 9.88 -26.70 -0.26 -1.77 16 27 C -0.15 -1.93 6.61 -25.92 -0.17 -2.10 16 28 C -0.16 -2.25 7.06 -25.91 -0.18 -2.43 16 29 C -0.14 -2.27 6.78 -25.91 -0.18 -2.44 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.09 0.99 2.96 -51.93 -0.15 0.83 16 34 H 0.10 1.04 4.42 -51.93 -0.23 0.81 16 35 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.07 0.71 5.90 -51.93 -0.31 0.40 16 40 H 0.10 0.78 7.47 -51.93 -0.39 0.39 16 41 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.12 1.33 6.22 -51.93 -0.32 1.01 16 43 H 0.10 0.83 6.08 -51.93 -0.32 0.51 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 0.98 7.44 -51.93 -0.39 0.59 16 47 H 0.10 1.32 7.35 -51.93 -0.38 0.94 16 48 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 49 H 0.10 1.48 2.87 -51.93 -0.15 1.33 16 50 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.14 2.71 4.50 -51.97 -0.23 2.48 16 52 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -32.14 410.98 -7.92 -40.06 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.38 Total: 4.80 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.34 Total: 3.66 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.23 Total: -46.46 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.60 Total: -23.82 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.14 -7.92 -40.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408522541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.793 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds