Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.35662 * 120.00456 * 333.20284 * 3 2 1 5 5 C 1.46810 * 119.99716 * 353.01685 * 4 3 2 6 6 C 1.39938 * 120.22401 * 322.89681 * 5 4 3 7 7 C 1.37787 * 119.88581 * 180.29865 * 6 5 4 8 8 C 1.38608 * 120.34744 * 359.70185 * 7 6 5 9 9 C 1.38112 * 120.45493 * 0.02562 * 8 7 6 10 10 C 1.38708 * 120.10825 * 359.97438 * 9 8 7 11 11 O 1.35558 * 120.17713 * 180.02562 * 10 9 8 12 12 C 1.34788 * 117.00013 * 354.24316 * 11 10 9 13 13 H 1.08004 * 120.00011 * 5.11468 * 12 11 10 14 14 C 1.38629 * 120.00041 * 184.82899 * 12 11 10 15 15 N 1.31560 * 120.00006 * 355.21853 * 14 12 11 16 16 Si 1.86796 * 119.99915 * 175.21858 * 14 12 11 17 17 H 1.48504 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47361 * 120.00224 * 16 14 12 19 19 H 1.48499 * 109.47256 * 240.00105 * 16 14 12 20 20 S 1.76201 * 119.99863 * 153.19965 * 3 2 1 21 21 C 1.76201 * 99.99957 * 295.26915 * 20 3 2 22 22 N 1.31041 * 125.08276 * 4.74940 * 21 20 3 23 23 C 1.35826 * 109.62837 * 179.97438 * 22 21 20 24 24 C 1.39747 * 133.37952 * 180.02562 * 23 22 21 25 25 C 1.37675 * 119.77836 * 179.97438 * 24 23 22 26 26 C 1.38711 * 120.50419 * 0.02562 * 25 24 23 27 27 C 1.37971 * 120.43488 * 359.95482 * 26 25 24 28 28 C 1.38672 * 119.85205 * 0.04505 * 27 26 25 29 29 N 1.36666 * 125.08233 * 184.43608 * 21 20 3 30 30 H 0.96997 * 126.37963 * 0.02562 * 29 21 20 31 31 H 1.07999 * 120.00717 * 173.02050 * 4 3 2 32 32 H 1.07997 * 120.05761 * 0.02562 * 6 5 4 33 33 H 1.07991 * 119.82873 * 179.72173 * 7 6 5 34 34 H 1.07995 * 119.76928 * 180.02562 * 8 7 6 35 35 H 1.08003 * 119.94655 * 180.02562 * 9 8 7 36 36 H 0.97003 * 120.00147 * 185.00043 * 15 14 12 37 37 H 1.08008 * 120.10971 * 359.97438 * 24 23 22 38 38 H 1.08001 * 119.74898 * 179.97438 * 25 24 23 39 39 H 1.07994 * 119.78366 * 179.97438 * 26 25 24 40 40 H 1.07991 * 120.07613 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2468 -1.0477 0.5296 5 6 2.5214 -2.1090 1.2387 6 6 1.4177 -1.7942 2.0393 7 6 0.7458 -2.7951 2.7066 8 6 1.1534 -4.1142 2.5844 9 6 2.2373 -4.4416 1.7936 10 6 2.9275 -3.4491 1.1135 11 8 3.9912 -3.7690 0.3365 12 6 4.4022 -5.0525 0.3598 13 1 3.8396 -5.7896 0.9136 14 6 5.5437 -5.4275 -0.3317 15 7 6.1727 -4.5526 -1.0865 16 14 6.1886 -7.1750 -0.1918 17 1 5.3077 -7.9567 0.7128 18 1 6.2038 -7.8062 -1.5359 19 1 7.5672 -7.1512 0.3595 20 16 3.4483 1.3631 -0.6880 21 6 2.9598 1.2224 -2.3751 22 7 2.0871 0.3611 -2.8372 23 6 1.9478 0.5274 -4.1781 24 6 1.1680 -0.1080 -5.1482 25 6 1.2477 0.2961 -6.4619 26 6 2.0967 1.3293 -6.8304 27 6 2.8729 1.9671 -5.8848 28 6 2.8056 1.5733 -4.5569 29 7 3.4300 1.9993 -3.3964 30 1 4.0815 2.7142 -3.3226 31 1 4.3208 -1.1016 0.4298 32 1 1.0959 -0.7680 2.1376 33 1 -0.1030 -2.5506 3.3278 34 1 0.6197 -4.8914 3.1113 35 1 2.5476 -5.4723 1.7040 36 1 6.9281 -4.8326 -1.6268 37 1 0.5051 -0.9134 -4.8683 38 1 0.6451 -0.1955 -7.2113 39 1 2.1503 1.6366 -7.8643 40 1 3.5316 2.7710 -6.1781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408598431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = 121.761496 kcal Electronic energy + Delta-G solvation = -27737.550437 eV Core-core repulsion = 23803.697041 eV Total energy + Delta-G solvation = -3933.853396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.078 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85873 -39.43143 -37.17956 -37.10622 -36.00515 -33.63278 -33.09281 -32.54015 -29.96602 -29.63927 -29.33148 -28.92156 -25.60735 -24.17667 -23.39266 -22.36393 -21.61911 -21.48383 -20.98238 -18.75999 -18.24694 -18.06924 -17.20731 -16.76649 -16.22501 -15.48464 -15.27019 -14.93463 -14.58811 -14.37459 -14.33896 -14.19286 -13.92230 -13.87278 -13.72493 -13.36864 -12.89509 -12.61747 -12.37917 -12.09932 -12.00553 -11.93963 -11.85891 -11.57140 -11.56175 -11.31280 -11.08305 -10.87088 -10.76696 -10.68036 -10.57024 -9.91881 -9.76548 -9.58672 -9.10489 -9.03883 -8.29138 -8.14463 -7.56719 -7.26593 -6.69297 -4.26357 0.67157 0.87831 1.34634 1.49721 1.91833 2.17201 2.34303 2.70180 3.00327 3.02456 3.06512 3.07961 3.54468 3.76786 3.85348 3.89437 4.36198 4.43032 4.52917 4.84337 4.87840 4.92354 4.99414 5.26810 5.28040 5.29302 5.42989 5.46056 5.58863 5.69797 5.82598 5.91169 6.01054 6.09467 6.29219 6.29856 6.43830 6.47364 6.51100 6.56415 6.82849 6.86436 6.98921 7.11288 7.13655 7.16364 7.54133 7.73077 7.78725 8.10059 8.73869 9.36001 10.45468 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.008150 B = 0.003267 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3434.804063 B = 8568.167589 C =10466.255238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.285 3.715 3 C -0.171 4.171 4 C 0.127 3.873 5 C -0.192 4.192 6 C -0.034 4.034 7 C -0.216 4.216 8 C -0.048 4.048 9 C -0.232 4.232 10 C 0.183 3.817 11 O -0.155 6.155 12 C -0.393 4.393 13 H 0.098 0.902 14 C 0.045 3.955 15 N -0.846 5.846 16 Si 0.944 3.056 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.273 1.273 20 S 0.130 5.870 21 C 0.245 3.755 22 N -0.472 5.472 23 C 0.059 3.941 24 C -0.062 4.062 25 C -0.130 4.130 26 C -0.105 4.105 27 C -0.113 4.113 28 C 0.053 3.947 29 N -0.587 5.587 30 H 0.424 0.576 31 H 0.155 0.845 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.275 0.725 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 10.785 -3.685 11.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.031 4.031 3 C -0.287 4.287 4 C 0.101 3.899 5 C -0.196 4.196 6 C -0.053 4.053 7 C -0.235 4.235 8 C -0.067 4.067 9 C -0.251 4.251 10 C 0.125 3.875 11 O -0.056 6.056 12 C -0.469 4.469 13 H 0.116 0.884 14 C -0.162 4.162 15 N -0.478 5.478 16 Si 0.768 3.232 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.198 1.198 20 S 0.367 5.633 21 C -0.128 4.128 22 N -0.195 5.195 23 C -0.062 4.062 24 C -0.082 4.082 25 C -0.151 4.151 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.058 4.058 29 N -0.202 5.202 30 H 0.263 0.737 31 H 0.172 0.828 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.983 11.170 -2.994 11.942 hybrid contribution 0.655 -0.981 -1.120 1.626 sum -2.328 10.189 -4.114 11.232 Atomic orbital electron populations 1.81101 1.11718 1.08169 1.10421 1.25079 0.92086 0.93384 0.92551 1.19126 0.88056 1.03968 1.17543 1.22843 1.00172 0.84762 0.82159 1.17932 1.02214 0.90317 1.09158 1.20993 0.91550 0.98793 0.93944 1.20549 1.03351 0.92985 1.06571 1.20987 0.94559 0.95864 0.95294 1.21151 0.99873 1.00103 1.04004 1.19298 0.87910 0.91678 0.88586 1.83870 1.38196 1.30546 1.52949 1.21501 1.09083 0.82275 1.33992 0.88422 1.25362 0.94893 1.00422 0.95549 1.70018 1.20107 1.34324 1.23392 0.85598 0.79183 0.79659 0.78783 1.18858 1.19930 1.19816 1.84138 1.56938 1.34043 0.88154 1.26218 0.96994 0.92504 0.97113 1.71099 1.17604 1.22302 1.08512 1.19138 0.99162 0.96910 0.90942 1.20353 0.97883 0.99019 0.90962 1.20870 1.00422 0.98397 0.95378 1.20844 0.96491 0.96483 0.98714 1.19887 1.02471 1.02164 0.88896 1.18946 0.98938 0.99401 0.88512 1.42884 1.39168 1.32835 1.05294 0.73666 0.82792 0.86633 0.87023 0.86886 0.84842 0.91509 0.85302 0.85379 0.85385 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.88 18.33 41.84 0.77 -8.11 16 2 C 0.28 5.42 10.95 -22.48 -0.25 5.17 16 3 C -0.17 -2.92 5.13 -38.58 -0.20 -3.11 16 4 C 0.13 2.29 9.12 -37.04 -0.34 1.95 16 5 C -0.19 -3.80 5.45 -104.91 -0.57 -4.37 16 6 C -0.03 -0.62 8.27 -39.11 -0.32 -0.94 16 7 C -0.22 -3.69 10.02 -39.61 -0.40 -4.09 16 8 C -0.05 -0.84 10.03 -39.49 -0.40 -1.23 16 9 C -0.23 -4.66 9.16 -39.45 -0.36 -5.02 16 10 C 0.18 4.05 6.67 -38.52 -0.26 3.79 16 11 O -0.16 -3.98 9.22 0.76 0.01 -3.97 16 12 C -0.39 -9.99 9.48 30.88 0.29 -9.70 16 13 H 0.10 2.29 5.21 -52.48 -0.27 2.02 16 14 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 15 N -0.85 -22.78 13.67 55.48 0.76 -22.02 16 16 Si 0.94 18.95 29.56 -169.99 -5.02 13.93 16 17 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 S 0.13 1.80 22.29 -107.50 -2.40 -0.60 16 21 C 0.25 3.95 8.13 -88.42 -0.72 3.23 16 22 N -0.47 -9.04 9.89 -10.90 -0.11 -9.14 16 23 C 0.06 1.02 7.22 -84.69 -0.61 0.41 16 24 C -0.06 -0.93 10.10 -39.22 -0.40 -1.33 16 25 C -0.13 -1.52 10.01 -39.61 -0.40 -1.92 16 26 C -0.11 -1.11 10.03 -39.50 -0.40 -1.50 16 27 C -0.11 -1.29 10.06 -39.52 -0.40 -1.69 16 28 C 0.05 0.77 7.29 -83.85 -0.61 0.16 16 29 N -0.59 -7.69 6.28 -10.57 -0.07 -7.76 16 30 H 0.42 3.84 8.96 -40.82 -0.37 3.48 16 31 H 0.15 2.65 8.06 -52.49 -0.42 2.22 16 32 H 0.12 1.97 6.27 -52.49 -0.33 1.64 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 35 H 0.13 2.62 5.64 -52.48 -0.30 2.33 16 36 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 37 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.87 373.97 -10.21 -42.08 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.36 Total: 9.12 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -6.42 Total: -19.17 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.35 Total: -47.03 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.01 Total: -3.97 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.40 Total: -0.60 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.87 -10.21 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408598431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.838 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds