Wall clock time and date at job start Tue Mar 31 2020 06:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 116.99745 * 2 1 4 4 C 1.38900 * 119.89682 * 180.02562 * 3 2 1 5 5 C 1.37811 * 120.09995 * 179.97438 * 4 3 2 6 6 C 1.39737 * 119.89801 * 0.02562 * 5 4 3 7 7 C 1.47582 * 120.10008 * 179.97438 * 6 5 4 8 8 C 1.35057 * 124.36777 * 179.97438 * 7 6 5 9 9 C 1.47253 * 106.47186 * 179.97438 * 8 7 6 10 10 C 1.38213 * 127.83800 * 179.97438 * 9 8 7 11 11 C 1.46289 * 119.99898 * 7.30711 * 10 9 8 12 12 C 1.40340 * 120.12733 * 29.64926 * 11 10 9 13 13 C 1.36527 * 119.86532 * 179.97438 * 12 11 10 14 14 C 1.39283 * 120.13393 * 0.02562 * 13 12 11 15 15 O 1.35500 * 119.87529 * 179.97438 * 14 13 12 16 16 C 1.34753 * 117.00014 * 7.51508 * 15 14 13 17 17 H 1.08004 * 120.00058 * 354.86538 * 16 15 14 18 18 C 1.38722 * 119.99949 * 174.85942 * 16 15 14 19 19 N 1.31507 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99985 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47422 * 179.97438 * 20 18 16 22 22 H 1.48505 * 109.47427 * 59.99900 * 20 18 16 23 23 H 1.48500 * 109.47066 * 299.99941 * 20 18 16 24 24 C 1.39280 * 120.25199 * 0.25449 * 14 13 12 25 25 C 1.36526 * 120.13111 * 359.48467 * 24 14 13 26 26 C 1.47534 * 104.32070 * 0.26135 * 9 8 7 27 27 O 1.21673 * 126.71293 * 179.71475 * 26 9 8 28 28 O 1.34531 * 106.57503 * 359.57345 * 26 9 8 29 29 C 1.39732 * 119.80230 * 0.24444 * 6 5 4 30 30 C 1.37808 * 119.89649 * 359.50223 * 29 6 5 31 31 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46889 * 299.99627 * 1 2 3 33 33 H 1.08999 * 109.47505 * 59.99689 * 1 2 3 34 34 H 1.07998 * 119.95229 * 359.95663 * 4 3 2 35 35 H 1.07998 * 120.05404 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.76299 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.99830 * 187.29440 * 10 9 8 38 38 H 1.07997 * 120.06748 * 359.96447 * 12 11 10 39 39 H 1.08008 * 119.93267 * 179.97438 * 13 12 11 40 40 H 0.96991 * 119.99636 * 359.97438 * 19 18 16 41 41 H 1.08000 * 119.93956 * 179.71950 * 24 14 13 42 42 H 1.08004 * 120.07026 * 180.25791 * 25 24 14 43 43 H 1.07994 * 120.04984 * 179.72412 * 29 6 5 44 44 H 1.08000 * 119.94677 * 180.25310 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 3.4329 1.2808 -0.0005 5 6 4.0629 2.5065 -0.0011 6 6 3.3038 3.6797 -0.0005 7 6 3.9738 4.9947 -0.0005 8 6 3.3266 6.1801 -0.0005 9 6 4.3659 7.2233 0.0001 10 6 4.1911 8.5943 -0.0002 11 6 2.8519 9.1609 0.1600 12 6 1.8790 8.4710 0.8996 13 6 0.6310 9.0050 1.0461 14 6 0.3225 10.2316 0.4628 15 8 -0.9179 10.7565 0.6111 16 6 -1.7529 10.1232 1.4582 17 1 -1.4523 9.1937 1.9187 18 6 -2.9986 10.6653 1.7389 19 7 -3.3649 11.7969 1.1779 20 14 -4.1558 9.7878 2.9137 21 1 -5.4133 10.5670 3.0443 22 1 -3.5099 9.6648 4.2452 23 1 -4.4642 8.4344 2.3862 24 6 1.2822 10.9180 -0.2772 25 6 2.5351 10.3963 -0.4260 26 6 5.6361 6.4729 -0.0061 27 8 6.7585 6.9427 -0.0125 28 8 5.3107 5.1675 0.0000 29 6 1.9086 3.6042 0.0057 30 6 1.2872 2.3742 0.0009 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 4.0188 0.3735 -0.0002 35 1 5.1415 2.5603 -0.0011 36 1 2.2575 6.3328 -0.0001 37 1 5.0431 9.2473 -0.1184 38 1 2.1169 7.5196 1.3519 39 1 -0.1187 8.4748 1.6147 40 1 -2.7638 12.2527 0.5681 41 1 1.0361 11.8665 -0.7311 42 1 3.2798 10.9314 -0.9966 43 1 1.3181 4.5084 0.0107 44 1 0.2089 2.3148 0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408740978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:26 Heat of formation + Delta-G solvation = -41.108849 kcal Electronic energy + Delta-G solvation = -30180.927958 eV Core-core repulsion = 25803.080784 eV Total energy + Delta-G solvation = -4377.847174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.03094 -40.32007 -39.55860 -38.00277 -37.35386 -37.27558 -34.13054 -32.69336 -31.99732 -31.26645 -30.77877 -29.85502 -28.15443 -27.02442 -25.57821 -24.90672 -23.08626 -22.58817 -22.17793 -21.69250 -20.63874 -19.26634 -18.82145 -18.49064 -17.28083 -17.23998 -16.52260 -16.38852 -16.23440 -16.05768 -15.48070 -15.14864 -14.72006 -14.52018 -14.34879 -14.20737 -14.11347 -13.89981 -13.70114 -13.44627 -13.27223 -13.19767 -12.93214 -12.68156 -12.55178 -12.23880 -12.12894 -11.84443 -11.52973 -11.47603 -11.34106 -11.11663 -11.07444 -10.63751 -10.50120 -10.45171 -10.12102 -9.78075 -9.33724 -9.23421 -8.95625 -8.69333 -7.97102 -7.19364 -7.09926 -4.41012 0.04412 0.94777 1.07528 1.95148 1.99478 2.48886 2.78507 2.93383 3.04098 3.05700 3.16299 3.24977 3.60309 3.80554 4.08720 4.25672 4.43100 4.48931 4.59517 4.65897 4.77107 4.81623 4.82261 4.98315 5.03841 5.10662 5.15901 5.17393 5.25401 5.33392 5.37546 5.43902 5.69775 5.74378 5.80105 5.90313 5.97118 6.01801 6.15372 6.23063 6.23197 6.38724 6.42227 6.52312 6.75021 6.87475 6.97358 7.03690 7.16822 7.19360 7.33821 7.53162 7.96454 8.44844 9.11482 10.23573 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.006917 B = 0.002674 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4047.052634 B =10467.704533 C =14182.074183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.131 3.869 4 C -0.150 4.150 5 C -0.059 4.059 6 C -0.059 4.059 7 C 0.064 3.936 8 C -0.164 4.164 9 C -0.280 4.280 10 C 0.108 3.892 11 C -0.214 4.214 12 C -0.028 4.028 13 C -0.241 4.241 14 C 0.172 3.828 15 O -0.176 6.176 16 C -0.465 4.465 17 H 0.093 0.907 18 C 0.015 3.985 19 N -0.857 5.857 20 Si 1.095 2.905 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.200 4.200 25 C -0.030 4.030 26 C 0.513 3.487 27 O -0.463 6.463 28 O -0.270 6.270 29 C -0.055 4.055 30 C -0.204 4.204 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.287 0.713 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -16.820 -1.918 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.086 3.914 4 C -0.169 4.169 5 C -0.077 4.077 6 C -0.059 4.059 7 C 0.021 3.979 8 C -0.183 4.183 9 C -0.282 4.282 10 C 0.089 3.911 11 C -0.215 4.215 12 C -0.046 4.046 13 C -0.260 4.260 14 C 0.114 3.886 15 O -0.077 6.077 16 C -0.539 4.539 17 H 0.111 0.889 18 C -0.194 4.194 19 N -0.485 5.485 20 Si 0.918 3.082 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.219 4.219 25 C -0.048 4.048 26 C 0.361 3.639 27 O -0.352 6.352 28 O -0.182 6.182 29 C -0.073 4.073 30 C -0.222 4.222 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.633 -16.639 -1.306 17.616 hybrid contribution 1.281 0.083 -0.709 1.467 sum 6.915 -16.556 -2.014 18.055 Atomic orbital electron populations 1.23107 0.78086 1.04093 1.01714 1.86059 1.21652 1.26915 1.88395 1.19196 0.92364 0.84214 0.95623 1.20345 0.91273 0.98580 1.06694 1.21130 1.00343 0.90452 0.95819 1.17840 0.92416 0.89117 1.06560 1.19574 0.79688 0.93673 1.05012 1.22826 0.99689 0.90185 1.05574 1.21442 0.92978 0.94229 1.19535 1.22632 0.96058 0.91935 0.80460 1.18390 0.93823 0.98512 1.10777 1.21074 0.91745 0.97209 0.94563 1.20876 0.98277 0.98185 1.08711 1.19553 0.84703 0.91710 0.92621 1.83551 1.18548 1.50470 1.55095 1.22499 0.98371 1.08860 1.24213 0.88935 1.26804 0.95579 0.96772 1.00236 1.70567 1.39163 1.13801 1.24977 0.83108 0.75550 0.75098 0.74464 1.19401 1.20258 1.20287 1.19914 0.92907 1.02076 1.07050 1.20655 0.95484 0.92914 0.95785 1.20789 0.89312 0.79874 0.73955 1.90920 1.25272 1.70736 1.48228 1.84311 1.23827 1.30473 1.79559 1.20931 0.92503 0.97882 0.96025 1.21145 1.00373 0.91768 1.08946 0.88155 0.92354 0.92378 0.84766 0.84491 0.81897 0.84834 0.85969 0.84913 0.90284 0.86018 0.86061 0.84733 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.98 10.49 -19.30 -0.20 -3.18 16 3 C 0.13 1.33 6.69 -39.09 -0.26 1.07 16 4 C -0.15 -1.50 9.97 -39.49 -0.39 -1.90 16 5 C -0.06 -0.64 9.69 -39.18 -0.38 -1.02 16 6 C -0.06 -0.70 5.87 -104.97 -0.62 -1.32 16 7 C 0.06 0.87 6.91 -36.90 -0.26 0.62 16 8 C -0.16 -2.23 8.32 -37.05 -0.31 -2.54 16 9 C -0.28 -4.13 6.12 -102.45 -0.63 -4.75 16 10 C 0.11 1.50 9.96 -36.36 -0.36 1.14 16 11 C -0.21 -3.29 5.71 -105.08 -0.60 -3.89 16 12 C -0.03 -0.45 8.08 -39.41 -0.32 -0.77 16 13 C -0.24 -4.55 9.09 -39.81 -0.36 -4.92 16 14 C 0.17 3.61 6.66 -38.81 -0.26 3.35 16 15 O -0.18 -4.38 9.14 1.03 0.01 -4.37 16 16 C -0.46 -11.56 9.48 30.91 0.29 -11.26 16 17 H 0.09 2.12 5.20 -52.48 -0.27 1.85 16 18 C 0.01 0.36 5.49 -17.51 -0.10 0.27 16 19 N -0.86 -23.10 13.69 55.48 0.76 -22.34 16 20 Si 1.10 20.95 29.92 -169.99 -5.09 15.86 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 24 C -0.20 -3.62 9.93 -39.81 -0.40 -4.02 16 25 C -0.03 -0.46 9.75 -39.40 -0.38 -0.84 16 26 C 0.51 8.34 8.80 34.52 0.30 8.65 16 27 O -0.46 -8.49 18.05 -18.94 -0.34 -8.83 16 28 O -0.27 -4.14 10.15 -20.46 -0.21 -4.35 16 29 C -0.06 -0.58 9.52 -39.18 -0.37 -0.96 16 30 C -0.20 -1.95 9.02 -39.49 -0.36 -2.31 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 33 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.37 7.83 -52.49 -0.41 0.96 16 36 H 0.16 2.03 5.18 -52.49 -0.27 1.75 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 1.74 5.62 -52.49 -0.30 1.45 16 39 H 0.13 2.50 5.64 -52.48 -0.30 2.20 16 40 H 0.29 7.87 7.97 -40.82 -0.33 7.55 16 41 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.13 1.26 6.82 -52.49 -0.36 0.91 16 44 H 0.14 1.00 6.28 -52.49 -0.33 0.68 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -29.60 383.87 -8.31 -37.91 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.26 Total: 7.77 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -4.76 Total: -24.26 kcal Atomic # 7 Polarization: -23.10 SS G_CDS: 0.76 Total: -22.34 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.74 Total: -20.73 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.09 Total: 15.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.60 -8.31 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408740978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.203 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds