Wall clock time and date at job start Tue Mar 31 2020 06:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 116.99745 * 2 1 4 4 C 1.38900 * 119.89682 * 180.02562 * 3 2 1 5 5 C 1.37811 * 120.09995 * 179.97438 * 4 3 2 6 6 C 1.39737 * 119.89801 * 0.02562 * 5 4 3 7 7 C 1.47582 * 120.10008 * 179.97438 * 6 5 4 8 8 C 1.35057 * 124.36777 * 179.97438 * 7 6 5 9 9 C 1.47253 * 106.47186 * 179.97438 * 8 7 6 10 10 C 1.38213 * 127.83800 * 179.97438 * 9 8 7 11 11 C 1.46289 * 119.99898 * 7.30711 * 10 9 8 12 12 C 1.40340 * 120.12733 * 29.64926 * 11 10 9 13 13 C 1.36527 * 119.86532 * 179.97438 * 12 11 10 14 14 C 1.39283 * 120.13393 * 0.02562 * 13 12 11 15 15 O 1.35500 * 119.87529 * 179.97438 * 14 13 12 16 16 C 1.34753 * 117.00014 * 7.51508 * 15 14 13 17 17 H 1.08004 * 120.00058 * 354.86538 * 16 15 14 18 18 C 1.38722 * 119.99949 * 174.85942 * 16 15 14 19 19 N 1.31507 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99985 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47422 * 179.97438 * 20 18 16 22 22 H 1.48505 * 109.47427 * 59.99900 * 20 18 16 23 23 H 1.48500 * 109.47066 * 299.99941 * 20 18 16 24 24 C 1.39280 * 120.25199 * 0.25449 * 14 13 12 25 25 C 1.36526 * 120.13111 * 359.48467 * 24 14 13 26 26 C 1.47534 * 104.32070 * 0.26135 * 9 8 7 27 27 O 1.21673 * 126.71293 * 179.71475 * 26 9 8 28 28 O 1.34531 * 106.57503 * 359.57345 * 26 9 8 29 29 C 1.39732 * 119.80230 * 0.24444 * 6 5 4 30 30 C 1.37808 * 119.89649 * 359.50223 * 29 6 5 31 31 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46889 * 299.99627 * 1 2 3 33 33 H 1.08999 * 109.47505 * 59.99689 * 1 2 3 34 34 H 1.07998 * 119.95229 * 359.95663 * 4 3 2 35 35 H 1.07998 * 120.05404 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.76299 * 0.02562 * 8 7 6 37 37 H 1.08000 * 119.99830 * 187.29440 * 10 9 8 38 38 H 1.07997 * 120.06748 * 359.96447 * 12 11 10 39 39 H 1.08008 * 119.93267 * 179.97438 * 13 12 11 40 40 H 0.96991 * 119.99636 * 359.97438 * 19 18 16 41 41 H 1.08000 * 119.93956 * 179.71950 * 24 14 13 42 42 H 1.08004 * 120.07026 * 180.25791 * 25 24 14 43 43 H 1.07994 * 120.04984 * 179.72412 * 29 6 5 44 44 H 1.08000 * 119.94677 * 180.25310 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 3.4329 1.2808 -0.0005 5 6 4.0629 2.5065 -0.0011 6 6 3.3038 3.6797 -0.0005 7 6 3.9738 4.9947 -0.0005 8 6 3.3266 6.1801 -0.0005 9 6 4.3659 7.2233 0.0001 10 6 4.1911 8.5943 -0.0002 11 6 2.8519 9.1609 0.1600 12 6 1.8790 8.4710 0.8996 13 6 0.6310 9.0050 1.0461 14 6 0.3225 10.2316 0.4628 15 8 -0.9179 10.7565 0.6111 16 6 -1.7529 10.1232 1.4582 17 1 -1.4523 9.1937 1.9187 18 6 -2.9986 10.6653 1.7389 19 7 -3.3649 11.7969 1.1779 20 14 -4.1558 9.7878 2.9137 21 1 -5.4133 10.5670 3.0443 22 1 -3.5099 9.6648 4.2452 23 1 -4.4642 8.4344 2.3862 24 6 1.2822 10.9180 -0.2772 25 6 2.5351 10.3963 -0.4260 26 6 5.6361 6.4729 -0.0061 27 8 6.7585 6.9427 -0.0125 28 8 5.3107 5.1675 0.0000 29 6 1.9086 3.6042 0.0057 30 6 1.2872 2.3742 0.0009 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 4.0188 0.3735 -0.0002 35 1 5.1415 2.5603 -0.0011 36 1 2.2575 6.3328 -0.0001 37 1 5.0431 9.2473 -0.1184 38 1 2.1169 7.5196 1.3519 39 1 -0.1187 8.4748 1.6147 40 1 -2.7638 12.2527 0.5681 41 1 1.0361 11.8665 -0.7311 42 1 3.2798 10.9314 -0.9966 43 1 1.3181 4.5084 0.0107 44 1 0.2089 2.3148 0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408740978.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:25 Heat of formation + Delta-G solvation = -54.818310 kcal Electronic energy + Delta-G solvation = -30181.522445 eV Core-core repulsion = 25803.080784 eV Total energy + Delta-G solvation = -4378.441660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.25255 -41.08370 -41.05032 -39.12319 -38.81527 -38.28095 -35.44502 -34.31667 -33.01701 -32.18404 -32.07057 -31.03785 -29.06303 -27.90451 -27.12540 -26.20739 -24.08376 -23.84269 -23.19919 -22.96374 -21.86781 -20.41245 -20.37399 -19.24239 -18.82133 -18.41324 -17.78476 -17.43495 -17.14257 -16.96545 -16.67168 -16.42212 -15.89897 -15.76006 -15.70130 -15.49886 -15.37371 -14.98243 -14.78670 -14.50994 -14.45881 -14.28914 -13.99027 -13.87774 -13.52320 -13.25794 -13.13638 -12.98331 -12.80611 -12.76832 -12.53028 -12.19636 -12.17869 -11.94438 -11.79923 -11.68249 -11.41682 -11.35001 -10.81582 -10.13172 -10.06645 -10.05913 -9.18661 -9.00656 -8.35184 -6.29340 -1.11706 -0.02196 0.29604 0.52893 0.65202 1.40541 1.50864 1.60612 1.61403 1.79095 1.88702 2.31029 2.31626 2.74415 2.77129 2.86998 3.05078 3.22388 3.39386 3.74054 3.83874 3.86748 3.91704 3.97990 4.07990 4.17963 4.25188 4.31660 4.38222 4.41200 4.46362 4.48685 4.58535 4.71417 4.76401 4.84317 4.87840 4.95577 5.08460 5.12537 5.20423 5.23312 5.28043 5.37357 5.45873 5.55895 5.61476 5.63412 5.88185 5.99887 6.17274 6.22433 6.34976 6.75494 7.48481 8.42972 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.006917 B = 0.002674 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4047.052634 B =10467.704533 C =14182.074183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.132 3.868 4 C -0.157 4.157 5 C -0.061 4.061 6 C -0.084 4.084 7 C 0.077 3.923 8 C -0.179 4.179 9 C -0.268 4.268 10 C 0.114 3.886 11 C -0.189 4.189 12 C -0.027 4.027 13 C -0.246 4.246 14 C 0.144 3.856 15 O -0.232 6.232 16 C -0.487 4.487 17 H 0.101 0.899 18 C -0.037 4.037 19 N -0.908 5.908 20 Si 1.141 2.859 21 H -0.277 1.277 22 H -0.260 1.260 23 H -0.256 1.256 24 C -0.209 4.209 25 C -0.019 4.019 26 C 0.512 3.488 27 O -0.484 6.484 28 O -0.276 6.276 29 C -0.054 4.054 30 C -0.206 4.206 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.165 0.835 43 H 0.145 0.855 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.783 -19.845 -2.018 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.086 3.914 4 C -0.176 4.176 5 C -0.079 4.079 6 C -0.085 4.085 7 C 0.033 3.967 8 C -0.198 4.198 9 C -0.270 4.270 10 C 0.095 3.905 11 C -0.189 4.189 12 C -0.044 4.044 13 C -0.265 4.265 14 C 0.092 3.908 15 O -0.137 6.137 16 C -0.562 4.562 17 H 0.118 0.882 18 C -0.235 4.235 19 N -0.541 5.541 20 Si 0.956 3.044 21 H -0.201 1.201 22 H -0.184 1.184 23 H -0.180 1.180 24 C -0.228 4.228 25 C -0.037 4.037 26 C 0.360 3.640 27 O -0.374 6.374 28 O -0.188 6.188 29 C -0.072 4.072 30 C -0.224 4.224 31 H 0.138 0.862 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.144 0.856 42 H 0.182 0.818 43 H 0.163 0.837 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.899 -19.723 -1.419 21.293 hybrid contribution 1.280 0.537 -0.849 1.627 sum 9.179 -19.186 -2.268 21.389 Atomic orbital electron populations 1.23402 0.76223 1.05791 1.02508 1.86055 1.23614 1.26562 1.88026 1.19395 0.92624 0.84790 0.94605 1.20542 0.91700 0.98850 1.06464 1.21228 1.00616 0.90567 0.95527 1.17934 0.93077 0.88576 1.08892 1.19952 0.78855 0.94672 1.03178 1.22925 1.00103 0.89699 1.07058 1.21571 0.92642 0.94777 1.17977 1.22784 0.95907 0.91925 0.79848 1.18691 0.94100 0.97866 1.08277 1.21318 0.90666 0.98050 0.94405 1.20976 0.99406 0.97608 1.08522 1.20190 0.84678 0.92729 0.93253 1.83568 1.20199 1.52225 1.57730 1.22717 0.98921 1.09351 1.25242 0.88187 1.28379 0.97400 0.96705 1.01058 1.70697 1.39200 1.16166 1.28042 0.82629 0.73447 0.74873 0.73411 1.20143 1.18440 1.17983 1.20211 0.93487 1.02449 1.06680 1.21088 0.94956 0.92735 0.94900 1.20985 0.89362 0.80290 0.73315 1.90912 1.26195 1.71303 1.48971 1.84317 1.24996 1.30115 1.79374 1.21108 0.92031 0.98781 0.95311 1.21392 1.01548 0.91193 1.08279 0.86200 0.91534 0.91532 0.83331 0.84155 0.80628 0.81968 0.83609 0.85451 0.92710 0.85644 0.81786 0.83688 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.33 10.49 -91.97 -0.96 -6.30 16 3 C 0.13 2.34 6.69 22.59 0.15 2.49 16 4 C -0.16 -2.79 9.97 22.33 0.22 -2.57 16 5 C -0.06 -1.21 9.69 22.53 0.22 -0.99 16 6 C -0.08 -1.81 5.87 -20.09 -0.12 -1.93 16 7 C 0.08 1.88 6.91 24.01 0.17 2.05 16 8 C -0.18 -4.27 8.32 23.91 0.20 -4.07 16 9 C -0.27 -6.88 6.12 -18.46 -0.11 -6.99 16 10 C 0.11 2.63 9.96 24.36 0.24 2.87 16 11 C -0.19 -5.07 5.71 -20.16 -0.12 -5.19 16 12 C -0.03 -0.79 8.08 22.38 0.18 -0.61 16 13 C -0.25 -9.19 9.09 22.12 0.20 -8.99 16 14 C 0.14 6.22 6.66 22.77 0.15 6.37 16 15 O -0.23 -12.34 9.14 -19.22 -0.18 -12.52 16 16 C -0.49 -25.70 9.48 67.94 0.64 -25.05 16 17 H 0.10 4.81 5.20 -2.91 -0.02 4.79 16 18 C -0.04 -1.96 5.49 84.86 0.47 -1.50 16 19 N -0.91 -52.93 13.69 21.62 0.30 -52.64 16 20 Si 1.14 43.72 29.92 68.60 2.05 45.77 16 21 H -0.28 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 24 C -0.21 -7.42 9.93 22.12 0.22 -7.20 16 25 C -0.02 -0.52 9.75 22.39 0.22 -0.30 16 26 C 0.51 15.17 8.80 70.27 0.62 15.79 16 27 O -0.48 -16.48 18.05 18.83 0.34 -16.14 16 28 O -0.28 -7.81 10.15 13.38 0.14 -7.67 16 29 C -0.05 -1.00 9.52 22.53 0.21 -0.79 16 30 C -0.21 -3.36 9.02 22.33 0.20 -3.16 16 31 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.49 7.65 -2.38 -0.02 0.47 16 33 H 0.07 0.49 7.65 -2.39 -0.02 0.47 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.57 7.83 -2.91 -0.02 2.54 16 36 H 0.18 3.75 5.18 -2.91 -0.02 3.73 16 37 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.15 3.64 5.62 -2.91 -0.02 3.63 16 39 H 0.13 4.85 5.64 -2.91 -0.02 4.84 16 40 H 0.26 15.99 7.97 -92.71 -0.74 15.25 16 41 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.15 2.30 6.82 -2.91 -0.02 2.28 16 44 H 0.16 1.81 6.28 -2.91 -0.02 1.79 16 Total: -1.00 -69.48 383.87 7.87 -61.61 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 1.11 Total: 26.42 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 5.08 Total: -38.53 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.30 Total: -52.64 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.66 Total: -42.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.05 Total: 45.77 kcal Total: -69.48 7.87 -61.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408740978.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.787 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds