Wall clock time and date at job start Tue Mar 31 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 C 1.53005 * 109.47149 * 119.99800 * 2 1 3 5 5 N 1.46502 * 109.47217 * 65.00006 * 4 2 1 6 6 C 1.38993 * 124.29572 * 269.98636 * 5 4 2 7 7 C 1.39058 * 131.69671 * 0.03515 * 6 5 4 8 8 C 1.38014 * 120.12530 * 179.97438 * 7 6 5 9 9 C 1.38504 * 120.62496 * 359.97438 * 8 7 6 10 10 C 1.38021 * 120.08640 * 0.04476 * 9 8 7 11 11 C 1.39102 * 119.72852 * 359.62344 * 10 9 8 12 12 C 1.48043 * 133.25214 * 179.59932 * 11 10 9 13 13 C 1.36587 * 127.49567 * 0.79614 * 12 11 10 14 14 C 1.46434 * 120.00486 * 187.29418 * 13 12 11 15 15 C 1.40136 * 120.24414 * 41.62231 * 14 13 12 16 16 C 1.37675 * 119.87516 * 180.02562 * 15 14 13 17 17 C 1.38679 * 120.38070 * 359.97262 * 16 15 14 18 18 C 1.38058 * 120.49677 * 0.02562 * 17 16 15 19 19 C 1.38769 * 120.11454 * 0.29201 * 18 17 16 20 20 O 1.35468 * 120.19038 * 179.70312 * 19 18 17 21 21 C 1.34765 * 117.00080 * 5.76077 * 20 19 18 22 22 H 1.08004 * 119.99369 * 5.44719 * 21 20 19 23 23 C 1.38728 * 120.00306 * 185.45316 * 21 20 19 24 24 N 1.31490 * 120.00523 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99703 * 359.97438 * 23 21 20 26 26 H 1.48492 * 109.47292 * 90.00360 * 25 23 21 27 27 H 1.48505 * 109.47075 * 210.00251 * 25 23 21 28 28 H 1.48497 * 109.47189 * 329.99928 * 25 23 21 29 29 C 1.34388 * 124.29775 * 90.02413 * 5 4 2 30 30 O 1.21762 * 126.01488 * 359.97438 * 29 5 4 31 31 H 1.09002 * 109.47433 * 299.99710 * 1 2 3 32 32 H 1.08996 * 109.47433 * 60.00527 * 1 2 3 33 33 H 1.09012 * 109.47024 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47508 * 239.99338 * 2 1 3 35 35 H 1.08996 * 109.47018 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.46832 * 299.99611 * 3 2 1 37 37 H 1.09002 * 109.46716 * 59.99851 * 3 2 1 38 38 H 1.09001 * 109.47226 * 305.00344 * 4 2 1 39 39 H 1.08992 * 109.47323 * 185.00148 * 4 2 1 40 40 H 1.08003 * 119.94400 * 359.97438 * 7 6 5 41 41 H 1.07995 * 119.68608 * 180.02562 * 8 7 6 42 42 H 1.08002 * 119.95399 * 180.02562 * 9 8 7 43 43 H 1.08003 * 120.14039 * 180.02562 * 10 9 8 44 44 H 1.08001 * 119.99227 * 7.29904 * 13 12 11 45 45 H 1.08001 * 120.05860 * 359.97172 * 15 14 13 46 46 H 1.08000 * 119.80583 * 179.97438 * 16 15 14 47 47 H 1.08001 * 119.75112 * 180.02562 * 17 16 15 48 48 H 1.07997 * 119.94176 * 180.02562 * 18 17 16 49 49 H 0.96995 * 120.00478 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.4642 -2.6407 1.7027 7 6 -0.5998 -2.0263 2.3540 8 6 -1.6830 -2.7741 2.7687 9 6 -1.7256 -4.1399 2.5427 10 6 -0.6788 -4.7676 1.8983 11 6 0.4144 -4.0216 1.4701 12 6 1.6728 -4.3735 0.7743 13 6 2.0701 -5.6092 0.3489 14 6 3.4213 -5.8015 -0.1817 15 6 4.5173 -5.1864 0.4382 16 6 5.7843 -5.3720 -0.0675 17 6 5.9832 -6.1652 -1.1875 18 6 4.9147 -6.7786 -1.8104 19 6 3.6281 -6.6002 -1.3221 20 8 2.5778 -7.1965 -1.9357 21 6 2.8595 -8.0460 -2.9432 22 1 3.8862 -8.2926 -3.1704 23 6 1.8309 -8.6035 -3.6887 24 7 2.1058 -9.4327 -4.6714 25 14 0.0552 -8.1773 -3.2953 26 1 -0.3540 -6.9863 -4.0821 27 1 -0.8187 -9.3259 -3.6451 28 1 -0.0733 -7.8811 -1.8458 29 6 2.4010 -3.1012 0.6358 30 8 3.4891 -2.9524 0.1100 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0278 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1299 1.4425 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6053 -0.2617 2.1370 39 1 3.1262 -0.6443 1.2953 40 1 -0.5785 -0.9619 2.5356 41 1 -2.5057 -2.2896 3.2735 42 1 -2.5788 -4.7146 2.8716 43 1 -0.7112 -5.8325 1.7212 44 1 1.3876 -6.4443 0.4040 45 1 4.3681 -4.5672 1.3104 46 1 6.6281 -4.8970 0.4109 47 1 6.9816 -6.3042 -1.5753 48 1 5.0800 -7.3947 -2.6818 49 1 1.3866 -9.8228 -5.1924 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409110810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:06 Heat of formation + Delta-G solvation = 19.648577 kcal Electronic energy + Delta-G solvation = -32530.263595 eV Core-core repulsion = 28388.602818 eV Total energy + Delta-G solvation = -4141.660777 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50701 -39.32309 -38.17227 -37.00974 -36.43386 -35.07502 -33.65488 -32.54413 -31.13066 -30.00529 -29.30198 -28.08827 -27.35379 -26.98777 -25.36111 -24.20945 -22.34231 -21.92144 -21.29175 -20.97149 -20.24267 -18.98163 -17.98446 -17.50493 -16.90491 -16.60386 -15.83913 -15.70606 -15.23380 -14.99699 -14.87538 -14.35379 -14.24172 -14.05838 -13.95552 -13.88570 -13.64764 -13.52569 -13.35255 -13.05873 -12.77825 -12.50350 -12.45082 -12.39061 -12.27469 -12.19654 -11.90167 -11.58058 -11.49060 -11.24397 -11.04686 -10.94340 -10.91535 -10.85553 -10.76253 -10.31823 -10.22172 -10.06185 -9.70416 -9.50156 -8.99931 -8.68558 -8.01996 -7.63195 -7.22845 -6.55917 -4.20246 0.53571 1.32132 1.74392 2.31313 2.37519 2.80378 3.13903 3.19334 3.29876 3.48790 3.88098 4.11890 4.41387 4.45285 4.53463 4.64519 4.66341 4.69915 4.79734 4.86302 4.97534 4.98129 5.15160 5.16862 5.30036 5.33794 5.43243 5.48348 5.49285 5.56711 5.60227 5.65798 5.71090 5.72069 5.81548 5.89243 5.94890 6.03578 6.08189 6.10861 6.18686 6.24110 6.43404 6.44573 6.49940 6.55259 6.68253 6.76109 6.86271 7.08412 7.12906 7.23488 7.26642 7.51660 7.67889 7.90159 8.23907 8.77870 9.38094 10.50802 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.003556 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.404752 B = 7871.842605 C = 9286.034547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.120 3.880 5 N -0.547 5.547 6 C 0.146 3.854 7 C -0.140 4.140 8 C -0.097 4.097 9 C -0.144 4.144 10 C -0.073 4.073 11 C -0.084 4.084 12 C -0.221 4.221 13 C 0.095 3.905 14 C -0.187 4.187 15 C 0.003 3.997 16 C -0.213 4.213 17 C -0.052 4.052 18 C -0.229 4.229 19 C 0.188 3.812 20 O -0.203 6.203 21 C -0.390 4.390 22 H 0.110 0.890 23 C 0.068 3.932 24 N -0.869 5.869 25 Si 0.902 3.098 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.257 1.257 29 C 0.557 3.443 30 O -0.493 6.493 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 15.717 14.472 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.201 4.201 4 C -0.001 4.001 5 N -0.268 5.268 6 C 0.049 3.951 7 C -0.161 4.161 8 C -0.116 4.116 9 C -0.163 4.163 10 C -0.092 4.092 11 C -0.087 4.087 12 C -0.225 4.225 13 C 0.076 3.924 14 C -0.188 4.188 15 C -0.015 4.015 16 C -0.232 4.232 17 C -0.070 4.070 18 C -0.248 4.248 19 C 0.134 3.866 20 O -0.106 6.106 21 C -0.465 4.465 22 H 0.127 0.873 23 C -0.137 4.137 24 N -0.506 5.506 25 Si 0.727 3.273 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.181 1.181 29 C 0.350 3.650 30 O -0.369 6.369 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.154 0.846 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.592 15.772 13.970 21.564 hybrid contribution -0.744 0.184 -0.212 0.795 sum -5.337 15.956 13.758 21.734 Atomic orbital electron populations 1.21940 0.94722 1.02388 1.01543 1.21535 0.96648 0.96514 0.98814 1.21754 1.01240 0.95080 1.01979 1.21663 1.01355 0.78703 0.98412 1.45488 1.17798 1.08396 1.55104 1.18234 0.87570 0.92464 0.96871 1.20197 0.93178 0.99725 1.03033 1.20809 0.97268 0.93965 0.99519 1.20913 0.98873 0.94726 1.01755 1.20584 0.91882 0.99767 0.96927 1.18993 0.95150 0.92647 1.01937 1.20426 0.96467 0.93674 1.11925 1.22153 0.93240 0.93995 0.83031 1.17912 0.92772 1.08356 0.99774 1.20781 0.91294 0.92101 0.97326 1.20541 0.96592 1.05682 1.00372 1.20984 0.97840 0.94171 0.94017 1.21190 0.91989 1.07293 1.04342 1.19196 0.87366 0.89317 0.90703 1.83461 1.30661 1.51914 1.44613 1.20836 0.96993 1.20088 1.08605 0.87291 1.24489 0.99931 0.95156 0.94136 1.69603 1.34457 1.28324 1.18171 0.86232 0.82327 0.78351 0.80396 1.19704 1.20489 1.18107 1.18387 0.84225 0.84728 0.77633 1.90903 1.18754 1.84698 1.42521 0.92726 0.92641 0.92077 0.90467 0.92357 0.92231 0.92582 0.90061 0.89319 0.86146 0.85789 0.85766 0.85578 0.84690 0.86910 0.87237 0.87001 0.84612 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.10 37.16 0.30 -1.18 16 2 C -0.12 -1.23 3.13 -90.62 -0.28 -1.51 16 3 C -0.14 -1.18 9.19 37.16 0.34 -0.83 16 4 C 0.12 1.34 5.22 -4.04 -0.02 1.32 16 5 N -0.55 -7.81 2.55 -114.63 -0.29 -8.10 16 6 C 0.15 1.97 5.40 -83.60 -0.45 1.52 16 7 C -0.14 -1.51 8.43 -39.36 -0.33 -1.84 16 8 C -0.10 -0.94 10.01 -39.57 -0.40 -1.34 16 9 C -0.14 -1.51 10.04 -39.56 -0.40 -1.91 16 10 C -0.07 -0.94 10.09 -39.34 -0.40 -1.34 16 11 C -0.08 -1.26 6.30 -104.85 -0.66 -1.92 16 12 C -0.22 -3.86 6.02 -102.81 -0.62 -4.48 16 13 C 0.09 1.76 9.39 -36.88 -0.35 1.41 16 14 C -0.19 -3.83 5.35 -104.94 -0.56 -4.39 16 15 C 0.00 0.06 7.04 -39.08 -0.27 -0.22 16 16 C -0.21 -3.83 10.02 -39.62 -0.40 -4.22 16 17 C -0.05 -0.96 10.03 -39.48 -0.40 -1.35 16 18 C -0.23 -4.93 9.12 -39.45 -0.36 -5.29 16 19 C 0.19 4.32 6.67 -38.44 -0.26 4.06 16 20 O -0.20 -5.15 8.04 1.10 0.01 -5.15 16 21 C -0.39 -10.59 9.90 30.91 0.31 -10.29 16 22 H 0.11 3.03 5.53 -52.48 -0.29 2.73 16 23 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 24 N -0.87 -24.29 13.96 55.48 0.77 -23.52 16 25 Si 0.90 20.93 28.62 -169.99 -4.86 16.06 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 29 C 0.56 9.80 7.26 -12.78 -0.09 9.71 16 30 O -0.49 -9.80 13.89 5.13 0.07 -9.73 16 31 H 0.05 0.45 7.57 -51.93 -0.39 0.05 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.73 5.94 -51.92 -0.31 0.42 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.72 7.75 -51.93 -0.40 0.31 16 39 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 40 H 0.12 1.04 7.00 -52.48 -0.37 0.67 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 44 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 45 H 0.11 2.02 6.60 -52.49 -0.35 1.67 16 46 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 48 H 0.14 3.01 5.71 -52.49 -0.30 2.71 16 49 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -30.17 402.02 -10.24 -40.41 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.61 Total: 6.30 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -5.39 Total: -22.35 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.48 Total: -31.62 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.08 Total: -14.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.17 -10.24 -40.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409110810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.059 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds