Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47157 * 2 1 4 4 N 1.46497 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.33790 * 120.24182 * 269.72531 * 4 3 2 6 6 O 1.21637 * 126.55697 * 359.97438 * 5 4 3 7 7 S 1.77230 * 106.89509 * 179.91016 * 5 4 3 8 8 C 1.77488 * 94.56536 * 0.29180 * 7 5 4 9 9 C 1.35794 * 127.96225 * 179.81510 * 8 7 5 10 10 C 1.46771 * 120.00111 * 352.61957 * 9 8 7 11 11 C 1.40121 * 120.08812 * 337.94339 * 10 9 8 12 12 C 1.37626 * 119.99232 * 179.73842 * 11 10 9 13 13 C 1.39080 * 120.16545 * 0.51299 * 12 11 10 14 14 O 1.35614 * 119.90746 * 179.74218 * 13 12 11 15 15 C 1.34750 * 117.00442 * 6.03802 * 14 13 12 16 16 H 1.08004 * 119.99908 * 354.90414 * 15 14 13 17 17 C 1.38689 * 120.00063 * 174.89871 * 15 14 13 18 18 N 1.31536 * 119.99851 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46951 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47080 * 120.00063 * 19 17 15 22 22 H 1.48498 * 109.46529 * 239.99814 * 19 17 15 23 23 C 1.39637 * 120.17490 * 359.76207 * 13 12 11 24 24 O 1.35956 * 119.99499 * 180.02562 * 23 13 12 25 25 C 1.42898 * 116.99997 * 179.97438 * 24 23 13 26 26 C 1.38051 * 120.00968 * 359.97438 * 23 13 12 27 27 C 1.32260 * 120.23878 * 89.99657 * 4 3 2 28 28 O 1.21706 * 122.52643 * 359.95758 * 27 4 3 29 29 H 1.09004 * 109.46741 * 300.00092 * 1 2 3 30 30 H 1.09004 * 109.46844 * 59.99982 * 1 2 3 31 31 H 1.08997 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47486 * 240.00022 * 2 1 3 33 33 H 1.09003 * 109.47346 * 119.99868 * 2 1 3 34 34 H 1.08993 * 109.46947 * 300.00123 * 3 2 1 35 35 H 1.08997 * 109.46718 * 60.00150 * 3 2 1 36 36 H 1.07996 * 119.99513 * 172.62274 * 9 8 7 37 37 H 1.08004 * 119.99970 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.91473 * 180.27263 * 12 11 10 39 39 H 0.97000 * 119.99694 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47226 * 179.97438 * 25 24 23 41 41 H 1.09005 * 109.47075 * 299.99625 * 25 24 23 42 42 H 1.09004 * 109.47399 * 59.99268 * 25 24 23 43 43 H 1.08002 * 120.08597 * 180.02562 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.4483 1.1567 6 8 3.6987 1.4542 2.2745 7 16 5.9029 1.4436 0.7483 8 6 5.6327 1.4429 -1.0059 9 6 6.5637 1.4432 -1.9944 10 6 7.9844 1.6075 -1.6646 11 6 8.3599 2.2100 -0.4565 12 6 9.6927 2.3582 -0.1467 13 6 10.6694 1.9209 -1.0350 14 8 11.9812 2.0743 -0.7268 15 6 12.2700 2.5409 0.5039 16 1 11.4738 2.8519 1.1641 17 6 13.5896 2.6218 0.9228 18 7 14.5593 2.2434 0.1186 19 14 13.9899 3.2680 2.6292 20 1 12.7310 3.6253 3.3311 21 1 14.7068 2.2204 3.3997 22 1 14.8503 4.4728 2.5128 23 6 10.3031 1.3248 -2.2434 24 8 11.2609 0.8982 -3.1088 25 6 10.8145 0.2972 -4.3259 26 6 8.9683 1.1676 -2.5590 27 6 4.1715 1.4423 -1.1417 28 8 3.6150 1.4413 -2.2241 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 6.2587 1.3226 -3.0234 37 1 7.6035 2.5545 0.2332 38 1 9.9807 2.8187 0.7867 39 1 15.4823 2.3003 0.4115 40 1 11.6771 0.0031 -4.9237 41 1 10.2133 -0.5830 -4.0974 42 1 10.2122 1.0132 -4.8852 43 1 8.6836 0.7063 -3.4931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409305592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -72.490634 kcal Electronic energy + Delta-G solvation = -29128.845184 eV Core-core repulsion = 24846.966713 eV Total energy + Delta-G solvation = -4281.878471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.61999 -39.91890 -38.75393 -37.89117 -36.82093 -36.09696 -34.37141 -33.18216 -32.44798 -29.94178 -29.30784 -27.75375 -26.56935 -25.76496 -24.87704 -23.66864 -22.29017 -21.86348 -20.99413 -19.59047 -18.82986 -18.42518 -17.73821 -17.32280 -16.76521 -16.24237 -15.74291 -15.64643 -15.38444 -15.32460 -15.13526 -14.83189 -14.40003 -14.21106 -14.17777 -13.82788 -13.78594 -13.68901 -13.39363 -12.64473 -12.58552 -12.47979 -12.08818 -12.00350 -11.94838 -11.80769 -11.47336 -11.44887 -11.29321 -11.08878 -11.06623 -10.93689 -10.62758 -10.53207 -10.35218 -10.01351 -9.86634 -9.69163 -9.17816 -8.39745 -8.00542 -7.08185 -6.83513 -4.29505 0.27064 0.85303 1.50430 1.68804 1.99119 2.30000 2.62710 2.89657 2.96733 2.99983 3.03804 3.68438 3.78839 4.09817 4.22079 4.55777 4.58464 4.69567 4.77650 4.81182 5.03454 5.08253 5.12026 5.24164 5.31952 5.37932 5.42614 5.43140 5.46145 5.64001 5.67793 5.69113 5.73739 5.78326 5.92997 6.02564 6.09977 6.28265 6.55315 6.61819 6.76833 6.86562 6.89184 7.01767 7.27152 7.46960 7.57528 7.90809 8.58775 9.24672 10.30739 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.002461 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.167746 B =11372.457481 C =13245.975272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.097 3.903 4 N -0.571 5.571 5 C 0.507 3.493 6 O -0.452 6.452 7 S 0.002 5.998 8 C -0.300 4.300 9 C 0.123 3.877 10 C -0.191 4.191 11 C -0.046 4.046 12 C -0.222 4.222 13 C 0.153 3.847 14 O -0.133 6.133 15 C -0.384 4.384 16 H 0.104 0.896 17 C 0.042 3.958 18 N -0.832 5.832 19 Si 0.948 3.052 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.056 3.944 24 O -0.302 6.302 25 C 0.029 3.971 26 C -0.127 4.127 27 C 0.565 3.435 28 O -0.492 6.492 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.278 0.722 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.816 -2.472 -3.038 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.027 4.027 4 N -0.316 5.316 5 C 0.190 3.810 6 O -0.327 6.327 7 S 0.240 5.760 8 C -0.415 4.415 9 C 0.097 3.903 10 C -0.193 4.193 11 C -0.066 4.066 12 C -0.242 4.242 13 C 0.094 3.906 14 O -0.032 6.032 15 C -0.458 4.458 16 H 0.121 0.879 17 C -0.167 4.167 18 N -0.462 5.462 19 Si 0.772 3.228 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.197 1.197 23 C 0.010 3.990 24 O -0.216 6.216 25 C -0.067 4.067 26 C -0.147 4.147 27 C 0.357 3.643 28 O -0.368 6.368 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.600 -2.519 -2.275 15.965 hybrid contribution -1.165 0.243 -0.111 1.196 sum -16.765 -2.275 -2.386 17.086 Atomic orbital electron populations 1.21661 0.94275 1.02319 1.02164 1.21832 0.96994 0.95813 1.03053 1.21939 0.76747 0.99067 1.04918 1.46405 1.10381 1.66781 1.08005 1.23120 0.94297 0.77907 0.85690 1.90868 1.72871 1.48181 1.20768 1.86711 1.02076 1.86412 1.00801 1.23111 0.94281 1.27894 0.96238 1.21814 0.90350 0.81042 0.97077 1.18026 0.90347 1.12852 0.98049 1.21161 0.95584 0.95758 0.94142 1.20784 0.91504 1.09700 1.02210 1.18918 0.85655 0.94566 0.91512 1.83964 1.18188 1.67983 1.33047 1.21744 0.93834 1.41411 0.88851 0.87890 1.25529 0.94223 0.96420 1.00529 1.70057 1.00546 1.39740 1.35888 0.85520 0.79508 0.78735 0.79085 1.18472 1.19644 1.19693 1.17997 0.87427 1.02620 0.90913 1.86246 1.31867 1.74793 1.28702 1.22945 1.01360 0.96852 0.85500 1.20793 0.90481 1.03568 0.99814 1.17518 0.87734 0.75715 0.83326 1.90842 1.72813 1.47170 1.26013 0.92327 0.92274 0.92074 0.91168 0.91358 0.88444 0.88757 0.83657 0.85558 0.84096 0.91190 0.88849 0.93314 0.93321 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.10 1.03 5.27 -4.04 -0.02 1.01 16 4 N -0.57 -7.47 2.48 -121.08 -0.30 -7.77 16 5 C 0.51 7.20 8.40 53.62 0.45 7.65 16 6 O -0.45 -7.14 17.38 5.24 0.09 -7.05 16 7 S 0.00 0.03 19.07 -107.50 -2.05 -2.02 16 8 C -0.30 -4.18 6.33 -37.02 -0.23 -4.42 16 9 C 0.12 1.64 9.82 -37.01 -0.36 1.27 16 10 C -0.19 -2.98 5.79 -105.06 -0.61 -3.59 16 11 C -0.05 -0.77 8.59 -39.10 -0.34 -1.11 16 12 C -0.22 -4.33 9.14 -39.49 -0.36 -4.69 16 13 C 0.15 3.37 6.67 -38.75 -0.26 3.11 16 14 O -0.13 -3.49 9.52 -13.92 -0.13 -3.62 16 15 C -0.38 -9.66 9.48 30.90 0.29 -9.36 16 16 H 0.10 2.35 5.19 -52.48 -0.27 2.07 16 17 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 18 N -0.83 -22.31 13.67 55.48 0.76 -21.55 16 19 Si 0.95 18.51 29.55 -169.99 -5.02 13.49 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 C 0.06 1.09 6.70 -39.13 -0.26 0.82 16 24 O -0.30 -5.89 10.28 -34.22 -0.35 -6.24 16 25 C 0.03 0.38 9.81 101.05 0.99 1.37 16 26 C -0.13 -2.01 8.78 -38.97 -0.34 -2.36 16 27 C 0.57 7.95 7.61 -13.93 -0.11 7.85 16 28 O -0.49 -7.59 16.85 5.18 0.09 -7.50 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.97 7.51 -51.93 -0.39 0.58 16 35 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 36 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 1.96 4.71 -29.87 -0.14 1.82 16 38 H 0.14 2.68 5.62 -52.49 -0.29 2.39 16 39 H 0.28 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 42 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 43 H 0.13 1.60 6.28 -52.49 -0.33 1.27 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -29.66 381.68 -6.94 -36.60 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.72 Total: 3.56 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.05 Total: -3.66 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.46 Total: -29.32 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.31 Total: -24.41 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.05 Total: -2.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.66 -6.94 -36.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409305592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.891 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds