Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47157 * 2 1 4 4 N 1.46497 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.33790 * 120.24182 * 269.72531 * 4 3 2 6 6 O 1.21637 * 126.55697 * 359.97438 * 5 4 3 7 7 S 1.77230 * 106.89509 * 179.91016 * 5 4 3 8 8 C 1.77488 * 94.56536 * 0.29180 * 7 5 4 9 9 C 1.35794 * 127.96225 * 179.81510 * 8 7 5 10 10 C 1.46771 * 120.00111 * 352.61957 * 9 8 7 11 11 C 1.40121 * 120.08812 * 337.94339 * 10 9 8 12 12 C 1.37626 * 119.99232 * 179.73842 * 11 10 9 13 13 C 1.39080 * 120.16545 * 0.51299 * 12 11 10 14 14 O 1.35614 * 119.90746 * 179.74218 * 13 12 11 15 15 C 1.34750 * 117.00442 * 6.03802 * 14 13 12 16 16 H 1.08004 * 119.99908 * 354.90414 * 15 14 13 17 17 C 1.38689 * 120.00063 * 174.89871 * 15 14 13 18 18 N 1.31536 * 119.99851 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99895 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46951 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47080 * 120.00063 * 19 17 15 22 22 H 1.48498 * 109.46529 * 239.99814 * 19 17 15 23 23 C 1.39637 * 120.17490 * 359.76207 * 13 12 11 24 24 O 1.35956 * 119.99499 * 180.02562 * 23 13 12 25 25 C 1.42898 * 116.99997 * 179.97438 * 24 23 13 26 26 C 1.38051 * 120.00968 * 359.97438 * 23 13 12 27 27 C 1.32260 * 120.23878 * 89.99657 * 4 3 2 28 28 O 1.21706 * 122.52643 * 359.95758 * 27 4 3 29 29 H 1.09004 * 109.46741 * 300.00092 * 1 2 3 30 30 H 1.09004 * 109.46844 * 59.99982 * 1 2 3 31 31 H 1.08997 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47486 * 240.00022 * 2 1 3 33 33 H 1.09003 * 109.47346 * 119.99868 * 2 1 3 34 34 H 1.08993 * 109.46947 * 300.00123 * 3 2 1 35 35 H 1.08997 * 109.46718 * 60.00150 * 3 2 1 36 36 H 1.07996 * 119.99513 * 172.62274 * 9 8 7 37 37 H 1.08004 * 119.99970 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.91473 * 180.27263 * 12 11 10 39 39 H 0.97000 * 119.99694 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47226 * 179.97438 * 25 24 23 41 41 H 1.09005 * 109.47075 * 299.99625 * 25 24 23 42 42 H 1.09004 * 109.47399 * 59.99268 * 25 24 23 43 43 H 1.08002 * 120.08597 * 180.02562 * 26 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.4483 1.1567 6 8 3.6987 1.4542 2.2745 7 16 5.9029 1.4436 0.7483 8 6 5.6327 1.4429 -1.0059 9 6 6.5637 1.4432 -1.9944 10 6 7.9844 1.6075 -1.6646 11 6 8.3599 2.2100 -0.4565 12 6 9.6927 2.3582 -0.1467 13 6 10.6694 1.9209 -1.0350 14 8 11.9812 2.0743 -0.7268 15 6 12.2700 2.5409 0.5039 16 1 11.4738 2.8519 1.1641 17 6 13.5896 2.6218 0.9228 18 7 14.5593 2.2434 0.1186 19 14 13.9899 3.2680 2.6292 20 1 12.7310 3.6253 3.3311 21 1 14.7068 2.2204 3.3997 22 1 14.8503 4.4728 2.5128 23 6 10.3031 1.3248 -2.2434 24 8 11.2609 0.8982 -3.1088 25 6 10.8145 0.2972 -4.3259 26 6 8.9683 1.1676 -2.5590 27 6 4.1715 1.4423 -1.1417 28 8 3.6150 1.4413 -2.2241 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 6.2587 1.3226 -3.0234 37 1 7.6035 2.5545 0.2332 38 1 9.9807 2.8187 0.7867 39 1 15.4823 2.3003 0.4115 40 1 11.6771 0.0031 -4.9237 41 1 10.2133 -0.5830 -4.0974 42 1 10.2122 1.0132 -4.8852 43 1 8.6836 0.7063 -3.4931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409305592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -90.120699 kcal Electronic energy + Delta-G solvation = -29129.609681 eV Core-core repulsion = 24846.966713 eV Total energy + Delta-G solvation = -4282.642968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.76322 -41.38872 -39.98198 -39.37284 -38.23898 -37.21486 -35.34753 -34.59336 -33.91403 -31.37954 -30.57079 -28.77393 -27.73644 -27.35684 -26.11772 -24.78834 -23.52167 -23.12033 -22.10068 -20.79828 -20.14068 -19.95134 -19.21095 -18.51623 -17.92803 -17.55778 -17.11685 -16.84650 -16.70001 -16.61975 -16.29505 -15.93873 -15.72585 -15.59176 -15.41352 -15.33522 -15.16589 -14.71024 -14.48220 -14.02835 -13.59515 -13.47688 -13.35100 -13.23736 -13.17829 -12.85135 -12.78747 -12.65639 -12.51441 -12.28607 -12.19094 -12.05846 -11.81608 -11.77636 -11.66538 -11.39016 -11.08084 -10.95747 -10.84610 -9.80210 -9.30356 -8.57681 -8.52693 -6.15646 -0.94324 -0.34364 0.25133 0.45324 0.55940 0.99589 1.37419 1.44849 1.49709 1.55474 1.73279 2.14032 2.53340 2.72199 2.87553 3.06038 3.28179 3.73051 3.77310 3.83243 3.91032 3.94948 4.09962 4.25593 4.27675 4.35737 4.40646 4.48000 4.49404 4.54166 4.60081 4.73724 4.77309 4.77764 4.90168 5.04001 5.04816 5.06515 5.25392 5.31128 5.36043 5.47241 5.53281 5.69863 5.80953 5.90703 6.30359 6.58487 6.89924 7.65748 8.67772 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.002461 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.167746 B =11372.457481 C =13245.975272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.091 3.909 4 N -0.569 5.569 5 C 0.515 3.485 6 O -0.465 6.465 7 S -0.009 6.009 8 C -0.282 4.282 9 C 0.132 3.868 10 C -0.159 4.159 11 C -0.058 4.058 12 C -0.218 4.218 13 C 0.118 3.882 14 O -0.200 6.200 15 C -0.413 4.413 16 H 0.111 0.889 17 C -0.017 4.017 18 N -0.906 5.906 19 Si 1.018 2.982 20 H -0.248 1.248 21 H -0.269 1.269 22 H -0.268 1.268 23 C 0.042 3.958 24 O -0.341 6.341 25 C 0.017 3.983 26 C -0.109 4.109 27 C 0.571 3.429 28 O -0.495 6.495 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.186 0.814 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.276 0.724 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 -3.013 -4.252 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.032 4.032 4 N -0.313 5.313 5 C 0.198 3.802 6 O -0.341 6.341 7 S 0.229 5.771 8 C -0.397 4.397 9 C 0.106 3.894 10 C -0.161 4.161 11 C -0.079 4.079 12 C -0.238 4.238 13 C 0.064 3.936 14 O -0.104 6.104 15 C -0.489 4.489 16 H 0.128 0.872 17 C -0.217 4.217 18 N -0.542 5.542 19 Si 0.837 3.163 20 H -0.171 1.171 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.003 4.003 24 O -0.257 6.257 25 C -0.077 4.077 26 C -0.128 4.128 27 C 0.362 3.638 28 O -0.372 6.372 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.203 0.797 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -20.926 -3.069 -3.509 21.439 hybrid contribution -0.454 0.240 -0.008 0.514 sum -21.380 -2.828 -3.517 21.851 Atomic orbital electron populations 1.21647 0.92400 1.03100 1.02895 1.21800 0.98594 0.94754 1.02140 1.22215 0.75030 1.00072 1.05844 1.46423 1.11535 1.66049 1.07279 1.22986 0.94049 0.77463 0.85706 1.90875 1.73065 1.48747 1.21431 1.86934 1.02660 1.86331 1.01151 1.23393 0.94771 1.25340 0.96162 1.22043 0.88344 0.80136 0.98834 1.18401 0.91895 1.09196 0.96615 1.21353 0.94691 0.96423 0.95388 1.20907 0.92363 1.08812 1.01703 1.19625 0.85461 0.95325 0.93208 1.83972 1.19864 1.72640 1.33881 1.22037 0.94406 1.42842 0.89588 0.87210 1.26643 0.93897 0.96742 1.04379 1.70192 1.00713 1.44875 1.38372 0.84534 0.79509 0.77987 0.74281 1.17063 1.19402 1.19326 1.18322 0.88926 1.02575 0.90510 1.86219 1.33371 1.75356 1.30705 1.23341 1.02941 0.97887 0.83564 1.21247 0.88616 1.01770 1.01146 1.17441 0.87552 0.75411 0.83386 1.90861 1.72919 1.47145 1.26259 0.91675 0.91488 0.91333 0.91943 0.92354 0.87469 0.87925 0.79685 0.83961 0.84698 0.91504 0.87491 0.91214 0.90956 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.91 71.98 0.71 -0.86 16 2 C -0.13 -2.14 6.26 30.60 0.19 -1.94 16 3 C 0.09 1.60 5.27 86.38 0.46 2.06 16 4 N -0.57 -12.77 2.48 -775.36 -1.92 -14.69 16 5 C 0.52 13.06 8.40 129.94 1.09 14.15 16 6 O -0.47 -13.54 17.38 -4.15 -0.07 -13.61 16 7 S -0.01 -0.22 19.07 -56.49 -1.08 -1.30 16 8 C -0.28 -6.49 6.33 23.93 0.15 -6.34 16 9 C 0.13 2.75 9.82 23.94 0.23 2.98 16 10 C -0.16 -4.34 5.79 -20.15 -0.12 -4.46 16 11 C -0.06 -1.85 8.59 22.58 0.19 -1.66 16 12 C -0.22 -8.69 9.14 22.33 0.20 -8.49 16 13 C 0.12 5.46 6.67 22.81 0.15 5.61 16 14 O -0.20 -11.41 9.52 -6.46 -0.06 -11.48 16 15 C -0.41 -22.70 9.48 67.93 0.64 -22.05 16 16 H 0.11 5.44 5.19 -2.91 -0.02 5.42 16 17 C -0.02 -0.91 5.49 84.84 0.47 -0.45 16 18 N -0.91 -53.45 13.67 21.62 0.30 -53.15 16 19 Si 1.02 40.77 29.55 68.60 2.03 42.80 16 20 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 23 C 0.04 1.63 6.70 22.56 0.15 1.78 16 24 O -0.34 -13.46 10.28 -79.08 -0.81 -14.28 16 25 C 0.02 0.40 9.81 113.37 1.11 1.51 16 26 C -0.11 -3.06 8.78 22.67 0.20 -2.86 16 27 C 0.57 13.43 7.61 86.85 0.66 14.09 16 28 O -0.50 -12.77 16.85 -4.37 -0.07 -12.84 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.72 7.51 -2.39 -0.02 1.70 16 35 H 0.10 1.67 7.68 -2.39 -0.02 1.65 16 36 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.14 4.07 4.71 -17.29 -0.08 3.99 16 38 H 0.14 5.43 5.62 -2.91 -0.02 5.41 16 39 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.34 7.66 -2.38 -0.02 1.32 16 42 H 0.07 1.35 7.66 -2.39 -0.02 1.34 16 43 H 0.17 3.27 6.28 -2.91 -0.02 3.25 16 Total: -1.00 -72.08 381.68 5.82 -66.26 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 1.01 Total: 19.21 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 6.50 Total: -6.93 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -1.62 Total: -67.84 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.02 Total: -52.20 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.08 Total: -1.30 kcal Total: -72.08 5.82 -66.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409305592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.856 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds