Wall clock time and date at job start Tue Mar 31 2020 05:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99961 * 2 1 4 4 C 1.38857 * 119.98658 * 0.02785 * 3 2 1 5 5 C 1.38252 * 120.24853 * 180.02562 * 4 3 2 6 6 C 1.38000 * 120.20609 * 359.97391 * 5 4 3 7 7 C 1.39599 * 119.96347 * 359.97438 * 6 5 4 8 8 C 1.47789 * 120.11843 * 180.02562 * 7 6 5 9 9 O 1.21613 * 119.99861 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00207 * 0.02562 * 8 7 6 11 11 N 1.40099 * 119.99907 * 179.97438 * 10 8 7 12 12 C 1.30079 * 119.99895 * 179.97438 * 11 10 8 13 13 C 1.46936 * 120.00010 * 180.02562 * 12 11 10 14 14 C 1.36276 * 126.70271 * 180.02562 * 13 12 11 15 15 N 1.36247 * 109.70273 * 179.97438 * 14 13 12 16 16 C 1.37071 * 124.87532 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99961 * 158.51130 * 16 15 14 18 18 C 1.38811 * 120.00230 * 338.50395 * 16 15 14 19 19 N 1.31452 * 119.99664 * 348.90012 * 18 16 15 20 20 Si 1.86797 * 119.99984 * 168.89155 * 18 16 15 21 21 H 1.48502 * 109.46946 * 60.00675 * 20 18 16 22 22 H 1.48507 * 109.46904 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47398 * 300.00612 * 20 18 16 24 24 C 1.38333 * 110.25221 * 0.02562 * 15 14 13 25 25 C 1.38979 * 133.15671 * 180.02562 * 24 15 14 26 26 C 1.37932 * 119.93576 * 179.33176 * 25 24 15 27 27 C 1.38668 * 120.60406 * 0.48822 * 26 25 24 28 28 C 1.37906 * 120.29329 * 359.69418 * 27 26 25 29 29 C 1.39190 * 119.67938 * 359.97438 * 28 27 26 30 30 C 1.38440 * 119.98215 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47488 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47324 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47124 * 299.99574 * 1 2 3 34 34 H 1.08009 * 119.87418 * 359.97438 * 4 3 2 35 35 H 1.07998 * 119.89596 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.01725 * 179.97438 * 6 5 4 37 37 H 0.96999 * 120.00134 * 0.02562 * 10 8 7 38 38 H 1.08000 * 120.00256 * 0.02562 * 12 11 10 39 39 H 1.08006 * 125.15014 * 359.97438 * 14 13 12 40 40 H 0.97006 * 119.99964 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03125 * 359.92929 * 25 24 15 42 42 H 1.07999 * 119.69674 * 180.13647 * 26 25 24 43 43 H 1.08000 * 119.85853 * 179.67152 * 27 26 25 44 44 H 1.07998 * 120.16118 * 179.97438 * 28 27 26 45 45 H 1.08007 * 120.10656 * 359.73003 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2894 2.3753 0.0006 5 6 1.9114 3.6100 0.0001 6 6 3.2889 3.6935 -0.0005 7 6 4.0580 2.5285 0.0000 8 6 5.5334 2.6139 -0.0001 9 8 6.2013 1.5976 0.0008 10 7 6.1388 3.8181 -0.0001 11 7 7.5374 3.8990 0.0005 12 6 8.1217 5.0612 0.0000 13 6 9.5886 5.1460 -0.0001 14 6 10.3386 6.2839 -0.0001 15 7 11.6623 5.9614 0.0004 16 6 12.6900 6.8686 0.0011 17 1 13.6706 6.5734 0.3441 18 6 12.4703 8.1665 -0.4392 19 7 11.3504 8.4703 -1.0568 20 14 13.7660 9.4814 -0.1539 21 1 15.0302 9.0843 -0.8243 22 1 13.2925 10.7727 -0.7141 23 1 14.0052 9.6327 1.3038 24 6 11.8205 4.5872 0.0002 25 6 12.9363 3.7587 0.0010 26 6 12.7765 2.3887 0.0145 27 6 11.5092 1.8259 0.0171 28 6 10.3901 2.6317 0.0126 29 6 10.5375 4.0158 0.0060 30 6 3.4285 1.2829 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8901 34 1 0.2110 2.3161 0.0006 35 1 1.3175 4.5119 0.0001 36 1 3.7716 4.6596 -0.0014 37 1 5.6061 4.6287 0.0004 38 1 7.5286 5.9637 -0.0004 39 1 9.9435 7.2891 -0.0004 40 1 11.1967 9.3775 -1.3643 41 1 13.9277 4.1872 0.0009 42 1 13.6463 1.7486 0.0173 43 1 11.3980 0.7516 0.0223 44 1 9.4041 2.1911 0.0143 45 1 4.0182 0.3781 0.0054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409376903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:18 Heat of formation + Delta-G solvation = 58.887453 kcal Electronic energy + Delta-G solvation = -29863.492277 eV Core-core repulsion = 25619.992682 eV Total energy + Delta-G solvation = -4243.499595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.59729 -40.18811 -39.24001 -37.28141 -36.18358 -35.91863 -33.48334 -32.37873 -31.47409 -30.84014 -29.75109 -28.71405 -27.87598 -27.67456 -25.41275 -23.98376 -22.73718 -22.09333 -21.62316 -20.65900 -20.27972 -19.30997 -18.33500 -17.73074 -16.76998 -16.74338 -16.36086 -16.10447 -15.97492 -15.56582 -14.95874 -14.80764 -14.75248 -14.48105 -14.29345 -13.93993 -13.81035 -13.63309 -13.13556 -12.95117 -12.91413 -12.56275 -12.34050 -12.18229 -11.98100 -11.84871 -11.53879 -11.42916 -11.37145 -11.28857 -11.13376 -10.77601 -10.70093 -10.44923 -10.05827 -9.85211 -9.51783 -9.32084 -9.28817 -8.99523 -8.59640 -8.10699 -7.22810 -7.00521 -6.54652 -4.47335 0.56978 1.09145 1.92743 2.36986 2.67386 2.69903 2.91576 2.95173 2.97561 3.09131 3.10352 3.68576 3.73594 4.12814 4.40447 4.41992 4.62320 4.67321 4.72465 4.75221 4.75473 4.81708 5.02688 5.06990 5.09859 5.19138 5.35367 5.56908 5.62968 5.83434 5.88401 5.94345 6.00887 6.04431 6.05877 6.26499 6.36037 6.43443 6.56621 6.77673 6.91204 6.98231 7.01891 7.03300 7.10259 7.39857 7.44379 7.50289 7.61687 7.88524 8.01139 8.03212 8.28427 8.77789 8.89089 9.19408 10.09347 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.015526 B = 0.001885 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.980444 B =14851.223703 C =16594.872371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.120 3.880 4 C -0.188 4.188 5 C -0.086 4.086 6 C -0.126 4.126 7 C -0.083 4.083 8 C 0.571 3.429 9 O -0.506 6.506 10 N -0.579 5.579 11 N -0.287 5.287 12 C 0.194 3.806 13 C -0.244 4.244 14 C 0.133 3.867 15 N -0.273 5.273 16 C -0.339 4.339 17 H 0.110 0.890 18 C 0.043 3.957 19 N -0.848 5.848 20 Si 0.943 3.057 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.266 1.266 24 C 0.046 3.954 25 C -0.108 4.108 26 C -0.137 4.137 27 C -0.161 4.161 28 C -0.076 4.076 29 C -0.067 4.067 30 C -0.091 4.091 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.373 0.627 38 H 0.103 0.897 39 H 0.179 0.821 40 H 0.283 0.717 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.372 -4.430 1.849 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.075 3.925 4 C -0.207 4.207 5 C -0.104 4.104 6 C -0.145 4.145 7 C -0.088 4.088 8 C 0.357 3.643 9 O -0.380 6.380 10 N -0.320 5.320 11 N -0.094 5.094 12 C -0.011 4.011 13 C -0.255 4.255 14 C -0.013 4.013 15 N 0.066 4.934 16 C -0.467 4.467 17 H 0.128 0.872 18 C -0.166 4.166 19 N -0.480 5.480 20 Si 0.767 3.233 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.061 4.061 25 C -0.128 4.128 26 C -0.157 4.157 27 C -0.181 4.181 28 C -0.094 4.094 29 C -0.073 4.073 30 C -0.111 4.111 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.211 0.789 38 H 0.120 0.880 39 H 0.196 0.804 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.142 0.858 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.644 -5.938 1.736 18.697 hybrid contribution -0.352 2.292 -0.083 2.321 sum -17.996 -3.646 1.653 18.436 Atomic orbital electron populations 1.23087 0.78237 1.04169 1.01346 1.86113 1.21445 1.26509 1.88710 1.18841 0.91965 0.84455 0.97242 1.21422 1.00272 0.92337 1.06688 1.20866 0.94204 0.97253 0.98056 1.21264 0.94124 0.97539 1.01597 1.19697 0.92634 0.93567 1.02880 1.17732 0.86338 0.82773 0.77455 1.90793 1.65610 1.34301 1.47253 1.46789 1.04054 1.07872 1.73245 1.75430 0.88312 1.23693 1.21921 1.23579 0.93774 0.92274 0.91442 1.17897 0.88128 0.92059 1.27432 1.22187 0.82180 0.98321 0.98595 1.40047 1.05222 1.02630 1.45511 1.19872 0.92020 0.90607 1.44188 0.87247 1.25529 0.98444 0.99011 0.93600 1.69844 1.24958 1.21675 1.31480 0.85720 0.79632 0.78501 0.79457 1.19136 1.20128 1.19035 1.18470 0.95059 0.83943 1.08620 1.19903 0.95959 0.92448 1.04454 1.20506 0.96693 0.93539 1.04917 1.20692 0.92525 0.98458 1.06389 1.20576 0.98523 0.91580 0.98762 1.18797 0.91426 0.92558 1.04492 1.20471 0.91313 0.98349 1.00943 0.92563 0.88062 0.92560 0.85059 0.85006 0.85392 0.78936 0.87984 0.80448 0.90586 0.87375 0.87365 0.87526 0.85779 0.83544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.14 10.49 -19.44 -0.20 -3.34 16 3 C 0.12 1.28 6.68 -39.28 -0.26 1.02 16 4 C -0.19 -1.57 9.03 -39.35 -0.36 -1.92 16 5 C -0.09 -0.69 10.03 -39.66 -0.40 -1.09 16 6 C -0.13 -1.24 9.54 -39.16 -0.37 -1.61 16 7 C -0.08 -1.08 5.87 -104.99 -0.62 -1.70 16 8 C 0.57 9.64 7.89 -12.35 -0.10 9.54 16 9 O -0.51 -10.63 16.69 5.27 0.09 -10.54 16 10 N -0.58 -9.35 6.22 30.52 0.19 -9.16 16 11 N -0.29 -5.69 9.81 32.08 0.31 -5.38 16 12 C 0.19 3.69 10.98 -14.77 -0.16 3.53 16 13 C -0.24 -5.47 6.27 -103.27 -0.65 -6.12 16 14 C 0.13 3.09 9.85 -16.30 -0.16 2.93 16 15 N -0.27 -6.75 2.89 -59.47 -0.17 -6.92 16 16 C -0.34 -8.23 9.89 -15.00 -0.15 -8.38 16 17 H 0.11 2.53 7.85 -52.48 -0.41 2.11 16 18 C 0.04 1.00 5.34 -17.50 -0.09 0.90 16 19 N -0.85 -20.04 10.86 55.49 0.60 -19.44 16 20 Si 0.94 17.66 29.57 -169.99 -5.03 12.63 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 C 0.05 1.11 6.73 -83.82 -0.56 0.55 16 25 C -0.11 -2.31 9.93 -39.42 -0.39 -2.70 16 26 C -0.14 -2.65 10.02 -39.53 -0.40 -3.05 16 27 C -0.16 -3.23 10.03 -39.54 -0.40 -3.62 16 28 C -0.08 -1.69 9.81 -39.35 -0.39 -2.08 16 29 C -0.07 -1.59 6.25 -104.90 -0.66 -2.25 16 30 C -0.09 -1.17 9.53 -39.02 -0.37 -1.54 16 31 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.24 7.66 -51.92 -0.40 -0.16 16 34 H 0.13 0.73 6.28 -52.48 -0.33 0.40 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.98 6.40 -52.49 -0.34 0.64 16 37 H 0.37 4.50 6.68 -182.60 -1.22 3.28 16 38 H 0.10 1.55 8.03 -52.49 -0.42 1.13 16 39 H 0.18 4.01 6.35 -52.48 -0.33 3.68 16 40 H 0.28 6.19 8.31 -40.82 -0.34 5.85 16 41 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.12 2.84 7.23 -52.49 -0.38 2.46 16 45 H 0.15 2.00 7.65 -52.48 -0.40 1.60 16 LS Contribution 391.81 15.07 5.90 5.90 Total: -1.00 -31.30 391.81 -9.67 -40.96 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.88 Total: 11.74 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -5.49 Total: -16.45 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.93 Total: -40.90 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.12 Total: -13.89 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.30 -9.67 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409376903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.852 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds